mRNA_E_fasciculatus_S2_contig7811.15981.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7811.15981.1
Unique NamemRNA_E_fasciculatus_S2_contig7811.15981.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7811.15981.1 vs.
Match: Herpes_ori_bp (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K438_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 2.850e-32
Identity = 63/93 (67.74%), Postives = 73/93 (78.49%), Query Frame = 1 
Query:    1 HVKSKVVSINGGMGTGKTTQIIADKDHRKPKRALCITCRQGMATNMTGRFEGFTSYHDAINEDMQIIEYESLHRLNDQKYDMIILDEIRSTLN 279
            HVKSKV+SI   M +GKT QI  D DH+ P R L ITCR+GMA  +TGRF GFT+Y D IN+D QIIEYESLHRL+  KYDMII+DE+RSTLN
Sbjct:  387 HVKSKVISICAPMRSGKTFQIERDIDHKDPPRVLVITCRRGMAATLTGRFSGFTNYQDGINKDRQIIEYESLHRLSWIKYDMIIMDELRSTLN 479
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7811.15981.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Herpes_ori_bp2.850e-3267.74domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7811contigE_fasciculatus_S2_contig7811:4690..4968 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size279
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionorigin-binding protein
Ec32 orthologEc-05_007030.2
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842443.1110833-CDS-E_fasciculatus_S2_contig7811:4689..49681696842443.1110833-CDS-E_fasciculatus_S2_contig7811:4689..4968Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7811 4690..4968 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7811.15981.1prot_E_fasciculatus_S2_contig7811.15981.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7811 4690..4968 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7811.15981.1

>prot_E_fasciculatus_S2_contig7811.15981.1 ID=prot_E_fasciculatus_S2_contig7811.15981.1|Name=mRNA_E_fasciculatus_S2_contig7811.15981.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=93bp
HVKSKVVSINGGMGTGKTTQIIADKDHRKPKRALCITCRQGMATNMTGRF
EGFTSYHDAINEDMQIIEYESLHRLNDQKYDMIILDEIRSTLN
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mRNA from alignment at E_fasciculatus_S2_contig7811:4690..4968-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7811.15981.1 ID=mRNA_E_fasciculatus_S2_contig7811.15981.1|Name=mRNA_E_fasciculatus_S2_contig7811.15981.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=279bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7811:4690..4968- (Ectocarpus fasciculatus EfasUO2)
CACGTCAAGTCCAAGGTCGTTTCGATCAACGGTGGCATGGGTACTGGAAA
AACGACGCAAATCATCGCAGACAAGGACCACAGGAAGCCGAAGAGGGCGC
TCTGCATCACGTGCCGTCAAGGGATGGCCACGAACATGACCGGTCGTTTC
GAGGGATTCACGAGCTACCACGACGCCATAAACGAGGACATGCAGATAAT
CGAGTACGAGTCGCTCCACCGCCTGAACGATCAGAAATACGACATGATCA
TCCTGGACGAGATACGGTCGACGCTCAAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7811:4690..4968-

>mRNA_E_fasciculatus_S2_contig7811.15981.1 ID=mRNA_E_fasciculatus_S2_contig7811.15981.1|Name=mRNA_E_fasciculatus_S2_contig7811.15981.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=279bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7811:4690..4968- (Ectocarpus fasciculatus EfasUO2)
CACGTCAAGTCCAAGGTCGTTTCGATCAACGGTGGCATGGGTACTGGAAA
AACGACGCAAATCATCGCAGACAAGGACCACAGGAAGCCGAAGAGGGCGC
TCTGCATCACGTGCCGTCAAGGGATGGCCACGAACATGACCGGTCGTTTC
GAGGGATTCACGAGCTACCACGACGCCATAAACGAGGACATGCAGATAAT
CGAGTACGAGTCGCTCCACCGCCTGAACGATCAGAAATACGACATGATCA
TCCTGGACGAGATACGGTCGACGCTCAAC
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