mRNA_E_fasciculatus_S2_contig781.15975.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig781.15975.1
Unique NamemRNA_E_fasciculatus_S2_contig781.15975.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig781.15975.1 vs.
Match: WSC (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK39_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 2.150e-19
Identity = 40/53 (75.47%), Postives = 45/53 (84.91%), Query Frame = 3 
Query:   63 PS*FFFRFGCYADSVTERIFTSRGQHNPITADMCYMFCDDGVNTHFGMQYSSE 221
            P+ F F  GCYADSV +RI  SRGQHNP++A+MCYMFCDDGVNTHFGMQYS E
Sbjct:   37 PADFSF-VGCYADSVGKRILNSRGQHNPMSAEMCYMFCDDGVNTHFGMQYSGE 88
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BLAST of mRNA_E_fasciculatus_S2_contig781.15975.1 vs.
Match: WSC (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTE6_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 1.990e-8
Identity = 25/53 (47.17%), Postives = 34/53 (64.15%), Query Frame = 3 
Query:   87 GCYADSVTERIFTS--------RGQHNPITADMCYMFCDDGVNTHFGMQYSSE 221
            GC+ADS  +RI  +          Q  P++A+ CY  CDDG+NTHFGM+YS+E
Sbjct:   36 GCFADSTIDRIMPNIRLVHLQEMTQQGPMSAETCYFICDDGLNTHFGMEYSTE 88
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig781.15975.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
WSC2.150e-1975.47domain-containing protein n=1 Tax=Ectocarpus silic... [more]
WSC1.990e-847.17domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig781contigE_fasciculatus_S2_contig781:889..2317 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size222
Hectar predicted targeting categorysignal peptide
Exons3
Cds size189
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842442.600097-CDS-E_fasciculatus_S2_contig781:888..9461696842442.600097-CDS-E_fasciculatus_S2_contig781:888..946Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig781 889..946 +
1696842442.6156485-CDS-E_fasciculatus_S2_contig781:1849..19491696842442.6156485-CDS-E_fasciculatus_S2_contig781:1849..1949Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig781 1850..1949 +
1696842442.6335526-CDS-E_fasciculatus_S2_contig781:2253..22841696842442.6335526-CDS-E_fasciculatus_S2_contig781:2253..2284Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig781 2254..2284 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842442.6486652-UTR-E_fasciculatus_S2_contig781:2284..23171696842442.6486652-UTR-E_fasciculatus_S2_contig781:2284..2317Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig781 2285..2317 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig781.15975.1prot_E_fasciculatus_S2_contig781.15975.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig781 889..2284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig781.15975.1

>prot_E_fasciculatus_S2_contig781.15975.1 ID=prot_E_fasciculatus_S2_contig781.15975.1|Name=mRNA_E_fasciculatus_S2_contig781.15975.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=63bp
MKICTSSALFGLLYVEAQAGCPADFSFVLAAMPTPSPRGYSLRGASITLS
LRTCATCSATTG*
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mRNA from alignment at E_fasciculatus_S2_contig781:889..2317+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig781.15975.1 ID=mRNA_E_fasciculatus_S2_contig781.15975.1|Name=mRNA_E_fasciculatus_S2_contig781.15975.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1429bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig781:889..2317+ (Ectocarpus fasciculatus EfasUO2)
ATGAAGATCTGTACCTCCTCTGCACTCTTCGGGCTGCTCTACGTGGAAGC
ACAGGCTGGTGAGAATGTGTAGCAGTCATTCTTGAGGATCTTTGCTGCAT
GTGTGTGAGCATGGATGGGGTATCGAGGCCGAAAAAGCTGTAGAGCGGAA
GATCATTCCATCGGCTGGAACACACGCTGCCCGAGATACCTACACCGTGC
ACACCGCTGCAGAGTCAATTATGCTCGCTCGTGCCACGTCGAAATAATTT
TGATTTTCTGTTTGACGATCTAGACATCTGAGTCTGGGCATTGTGCACTC
GGTCGGCTGTTCGCTTACCGTGTACCATCCATGACACAAGATACCACACC
CACAGTACTGTAGATAATCCCTCCAAAAAGACAGCACTTTCGGTGGTAAT
AGTTGTACACACGGTCAACATGAGCCATAGCGCCATAGTTATATCTACTA
TCAGGACGTCCAGAATCAACGGGATGAAACACAAACACAGCACACACACG
CGTTTGTTTGTACGTGCGCGTCTATGCCTGTTCTTCAAGTTCCGCCCACG
ATGGATGCTTGCATTGGGCCGCCGTTATCTCGTTGAAACTTCGAGAGAGA
TCGCTTTCAAAATTCGCCGTTTAAAGATAGTCAATGTGGTGTCCAATCCT
ACCCACCCAAGAAAGAATGCATACAAACGGAAGTATCTCCTACCGCCACA
GCGAGTGCGAGCGCAAGCGTTCGCAGCTTATCCCTCTTGTAAGGATTCGA
TGTGTGTTTCCATATCGTTCTATCGTACGTGAGTGAATTCGTTGCTGCAC
CGCCCAAGACTGTAAATGGCCGTAGTTGACATTGAGAGGCGCAGGAGGGC
GGGTCCGTACGTCCAACGTCAGACTCGTACATGCAAACTGTCTCCCGCTA
CATATGCAAACCGTTCCACTCCGGCGCGCCTCATTCGTCCCTTCCCCGAT
CGGCCTTGCAGGCTGCCCAGCTGATTTTTCTTTCGTTTTGGCTGCTATGC
CGACTCCGTCACCGAGAGGATATTCACTTCGAGGGGCCAGCATAACCCTA
TCACTGCGGACGTAAGCTGTAAGCTGTAACGCTTGTCCAGTGGTCATGCA
CTATCAGACTTCGGTTTAGCCGCTGGGGGCGACGGGATGCTTTCTTCATG
TGTCTGGGCTGCAGGAGTGTTTTTTTGTCGGAGCGCATATGGTCTAGGAG
TAGCTCGTATGGTTCCCGTCATGGCTGTTGCTTTGAGAGTTGTGATCTTG
AGGTTATTCTTGTTTGTCACTTGTCTCTCTCTATCGAGTATACATACACT
GCATGCTACAGTGGCAGTGGCGGATAATATCCGGTCTCGATGGACATCGC
TGTTTTCACTCTCAGATGTGCTACATGTTCTGCGACGACGGGGTGAACAC
CCACTTTGGCATGCAATACTCCAGCGAGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig781:889..2317+

>mRNA_E_fasciculatus_S2_contig781.15975.1 ID=mRNA_E_fasciculatus_S2_contig781.15975.1|Name=mRNA_E_fasciculatus_S2_contig781.15975.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=189bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig781:889..2317+ (Ectocarpus fasciculatus EfasUO2)
ATGAAGATCTGTACCTCCTCTGCACTCTTCGGGCTGCTCTACGTGGAAGC
ACAGGCTGGCTGCCCAGCTGATTTTTCTTTCGTTTTGGCTGCTATGCCGA
CTCCGTCACCGAGAGGATATTCACTTCGAGGGGCCAGCATAACCCTATCA
CTGCGGACATGTGCTACATGTTCTGCGACGACGGGGTGA
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