mRNA_E_fasciculatus_S2_contig780.15969.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig780.15969.1
Unique NamemRNA_E_fasciculatus_S2_contig780.15969.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig780.15969.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPL5_9PHAE)

HSP 1 Score: 389 bits (999), Expect = 9.660e-129
Identity = 298/466 (63.95%), Postives = 312/466 (66.95%), Query Frame = 1 
Query:    1 GTNECLKSTDNRCQAGAAAISFVGCDLGDEDMDDLGSCFDAAGRGTITELRLSDTSMTTIGEGLLEGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSLYLNDNGLSTLTAEDFGGLEAVSTLNLSANTLNSLPSGLLATLTALIVLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSGNDDLQCVPSTAGTKLSETTLLVPEGVGEMCACPDEGVDVSCLDCEPGVDGYICTAITPQPTSAXXXXXXXXXWHPVEGCMSSAEECQEDPECMECHTITDQERWNSCTASIDVNDGCAAFGQHFCCLDEQSTSDCSTNDRAQAYVSCISETAGLQCSAWSCVGEANTSGTGASTVETDSETDSNTAAALRESLTGLNNFVGAAMTVAGFILTVVGAK 1398
            GTNECLKSTD+RCQAGAAAISFVGC L DEDMDDLGSCFDAAGRGTI EL      + ++  G+ +G           XXXXXXXXXXXXXXXXXXXXX                                                SLYLNDN LS +TAEDF                                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          L GNDDLQCVPS AGTKLSE TLL PEGVGEMCACP EGVDVSCLDCEPGV GY CTA TPQPTSAXXXXXXXX W+P EGC+  AE CQEDPECMECHT+TDQE WNSCTASI+ +DGCAAFGQHFCCLDEQSTSDCSTNDRAQAY SCISE AGLQCS WSCV EANTSGTG  TVE DS    N AAA  E LTG NN VGAAM V GFI+T +G K
Sbjct:   25 GTNECLKSTDSRCQAGAAAISFVGCGLADEDMDDLGSCFDAAGRGTIAELSFQHNELDSLPSGMFDGMSHLWSLDLGSXXXXXXXXXXXXXXXXXXXXX------------------------------------------------SLYLNDNTLSAVTAEDFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADLRSLTSLDLRGNDDLQCVPSMAGTKLSEVTLLAPEGVGEMCACPGEGVDVSCLDCEPGVGGYTCTATTPQPTSAXXXXXXXXPWNPAEGCLPFAEACQEDPECMECHTVTDQEGWNSCTASINSDDGCAAFGQHFCCLDEQSTSDCSTNDRAQAYFSCISEAAGLQCSPWSCVREANTSGTGTPTVEPDS----NNAAASCEPLTGWNNLVGAAMIVVGFIVTTMGEK 438
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig780.15969.1 vs.
Match: Hypothetical (leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8B9_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 2.130e-33
Identity = 163/179 (91.06%), Postives = 167/179 (93.30%), Query Frame = 1 
Query:   55 AISFVGCDLGDEDMDDLGSCFDAAGRGTITELRLSDTSMTTIGEGLLEGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSLYLNDNGLSTLTAEDFGGLEAVSTLNLSANTLNSLPSGLLATLTALIVL 591
            A SFVGC L DEDMDDLGSCFDAAGRGTITELRLSDTSMTT+GEGLLEGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  KSLY NDN LS +TAE F GLEAVSTLNLS+NTL+SLPSG L TLTALIVL
Sbjct:   16 ASSFVGCGLADEDMDDLGSCFDAAGRGTITELRLSDTSMTTVGEGLLEGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLKSLYFNDNALSAVTAECFDGLEAVSTLNLSSNTLSSLPSGFLVTLTALIVL 194
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig780.15969.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized9.660e-12963.95protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical2.130e-3391.06leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig780contigE_fasciculatus_S2_contig780:5414..14637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score135.2
Seed ortholog evalue7.9e-29
Seed eggNOG ortholog2880.D7G8B9
Model size1401
Hectar predicted targeting categoryother localisation
Exons14
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
Cds size1401
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842441.985341-CDS-E_fasciculatus_S2_contig780:5413..54721696842441.985341-CDS-E_fasciculatus_S2_contig780:5413..5472Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig780 5414..5472 +
1696842441.9976032-CDS-E_fasciculatus_S2_contig780:6824..69141696842441.9976032-CDS-E_fasciculatus_S2_contig780:6824..6914Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig780 6825..6914 +
1696842442.0058486-CDS-E_fasciculatus_S2_contig780:7354..74261696842442.0058486-CDS-E_fasciculatus_S2_contig780:7354..7426Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig780 7355..7426 +
1696842442.013577-CDS-E_fasciculatus_S2_contig780:7739..78111696842442.013577-CDS-E_fasciculatus_S2_contig780:7739..7811Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig780 7740..7811 +
1696842442.021953-CDS-E_fasciculatus_S2_contig780:8220..82921696842442.021953-CDS-E_fasciculatus_S2_contig780:8220..8292Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig780 8221..8292 +
1696842442.0303671-CDS-E_fasciculatus_S2_contig780:8595..86761696842442.0303671-CDS-E_fasciculatus_S2_contig780:8595..8676Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig780 8596..8676 +
1696842442.0386531-CDS-E_fasciculatus_S2_contig780:9404..95481696842442.0386531-CDS-E_fasciculatus_S2_contig780:9404..9548Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig780 9405..9548 +
1696842442.0558763-CDS-E_fasciculatus_S2_contig780:10252..103241696842442.0558763-CDS-E_fasciculatus_S2_contig780:10252..10324Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig780 10253..10324 +
1696842442.06698-CDS-E_fasciculatus_S2_contig780:11548..116201696842442.06698-CDS-E_fasciculatus_S2_contig780:11548..11620Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig780 11549..11620 +
1696842442.075955-CDS-E_fasciculatus_S2_contig780:12058..121061696842442.075955-CDS-E_fasciculatus_S2_contig780:12058..12106Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig780 12059..12106 +
1696842442.086258-CDS-E_fasciculatus_S2_contig780:12436..124921696842442.086258-CDS-E_fasciculatus_S2_contig780:12436..12492Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig780 12437..12492 +
1696842442.0969257-CDS-E_fasciculatus_S2_contig780:12906..129781696842442.0969257-CDS-E_fasciculatus_S2_contig780:12906..12978Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig780 12907..12978 +
1696842442.1071658-CDS-E_fasciculatus_S2_contig780:13842..138901696842442.1071658-CDS-E_fasciculatus_S2_contig780:13842..13890Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig780 13843..13890 +
1696842442.118501-CDS-E_fasciculatus_S2_contig780:14194..146371696842442.118501-CDS-E_fasciculatus_S2_contig780:14194..14637Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig780 14195..14637 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig780.15969.1prot_E_fasciculatus_S2_contig780.15969.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig780 5414..14637 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig780.15969.1

>prot_E_fasciculatus_S2_contig780.15969.1 ID=prot_E_fasciculatus_S2_contig780.15969.1|Name=mRNA_E_fasciculatus_S2_contig780.15969.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=467bp
GTNECLKSTDNRCQAGAAAISFVGCDLGDEDMDDLGSCFDAAGRGTITEL
RLSDTSMTTIGEGLLEGFGALRELRMENNLFSAIPPGLFQDVEALEFLSF
QHNELESLPSGMFDGMSHLLSLDLGSNRLNSLPEGVFGTSSGLGSLKSLY
LNDNGLSTLTAEDFGGLEAVSTLNLSANTLNSLPSGLLATLTALIVLTLD
SNGLSVLPVDSFDGLDKLQILYLNNNALSTLSAGLLADLASLTSLDLSGN
DDLQCVPSTAGTKLSETTLLVPEGVGEMCACPDEGVDVSCLDCEPGVDGY
ICTAITPQPTSAPTPAPTPAPWHPVEGCMSSAEECQEDPECMECHTITDQ
ERWNSCTASIDVNDGCAAFGQHFCCLDEQSTSDCSTNDRAQAYVSCISET
AGLQCSAWSCVGEANTSGTGASTVETDSETDSNTAAALRESLTGLNNFVG
AAMTVAGFILTVVGAK*
back to top

mRNA from alignment at E_fasciculatus_S2_contig780:5414..14637+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig780.15969.1 ID=mRNA_E_fasciculatus_S2_contig780.15969.1|Name=mRNA_E_fasciculatus_S2_contig780.15969.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=9224bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig780:5414..14637+ (Ectocarpus fasciculatus EfasUO2)
GGTACGAACGAGTGTTTGAAATCGACGGATAACAGATGCCAGGCAGGTGC
AGCTGCAATGTGAGCTACGGAATGCGGATTCGAAGAAGGAAAAGGGCTTC
TTCAGTACATATGACTTGCTCAGAATTTCGAATTTTCAAGAGATTAGTAT
CAGATCGGGCGCCATCACAGGTGTCATGTCTTCGAGAATGATAATGCTGG
GGTGCAGGGTCAGCGAATCGTCGACCAATCTCTGTTTCCAGCTTAAGGGT
GATCCTGTCTTGTTGGCACACGGCGGCGAACCTCGAATACGGAAGAACAG
ATCTCAAACATGCTGCTTGGAACGCCAATCGGTCATCTTCTCGCACTTGA
TAAACACCCCATGGTGCCGTTGCACGGTATCACGTGTGGCTTGAACCGAA
GACACTACTCGATGAAGTATATACGCTTCCTCTTTATGGCACGAGGAATA
GTCTATAGTCGCTATTCGGAATCGTATATGCTGCTCTGTCACTGCCTCGC
CATGAATTGGTTCGACGAGCAACCCTCTGTACTCACTTTTTTTTCCGCTG
CCAAAGAAGTACGAACGTAGTTATTTCTCTCATGGTGTCATCACAAGCGT
TGACGTGGTCAACTTTCACTGAGGTGTGAGAACACTGCCGTGCGTACCTG
TAGATGCTATAGATGACATACTCGAAAGTGGTTACCATTCGTCTCCCACG
ACGGGGGTAGAAAGCCCGAAAACGATGACAAAAGTAGACCCGGCCTAGAA
ACGTTCTGGCTAGAGTATGTCTTAGAAACCACGTCCTAAGTTGAGGCAAG
TCATTCTTACCACAACACCGGTCGTCGCAATCACAATACCGAAGAGAAGG
TTGCCTTATGCAAAGGTTATTGTTTGTGGAGACAACCCGTCATATGAGCA
GCTAAGTATCGAAGTAAAATACATACATGTTTTCAGAAGAATAATGCGCT
TAAGGCCTTGTCGCGGTTGCTCCATAACCTAAGTGTTGGGGGACGAGGGG
ATACTCTACCCCCAGAACGAGCATTACGAGGCATGTTGCCCAATATATCT
CGTCGCGAAAAGGGAATGAAGAGATGAACGAAGTGTGAGAAACGCCTTGG
CAATCGACGGGCCTATTCAATTTGTTGTCCCTTGGAATCTCTGCGCCAAG
GGGACAGGGGGCTTTGTCTGAACTTTGAGCGCTGAAAAACTCCCACATCC
GTCTTGAAAACAATTGGTATGTCTTTGGTTATTGATACGCAAAGAGCCCG
CTTTCATGTACTTGTGTACAGCCTGACACGATCGGTTATACATCGCAGGC
ACCAGGATCGCGTGTCTCGCCGTCTCTTGCTGTCGTCGTGCGGTCTTTTT
CATGTGCTGTATGGAAATAATTGAACATGTTCCGCAAATCCTCTCCATTG
TTTGTGGCCAGCTCGTTCGTCGGGTGCGATTTGGGCGACGAGGACATGGA
TGATCTTGGGTCGTGCTTTGACGCAGCTGGAAGAGGAACGATCACAGAGT
TGTAAGAGCGTAGGGAGTGTGAGAACTTCAGTAATAGTACTTCTCCGAGT
CCGAACTCGGTGCATGGGATGACAATTTCCTACATAGCAAGAAGGGGAGA
TTCTCGTGAGGCCACTGCCGTGCAGTTGAAGCAATCGATTATCCGACGTG
TCGATTGAAACTTTCAGAGCCAATAATCAACGACTGAACGTCGCATCGGG
ACAATAGATGAGACCTGAATTCACTTACGCCCTCACAAGTTGACAATGGT
GGGGTGCTCTTGTTCGCCCATCATATATTCTGTCATATATTGCTCTTGTT
CGTTGTCGTTGACAAACGTTCAGATGCTAACAGTTGGTTGAGGTAGCAGA
GATCGTCTCTCACCAAATTTTCGCCTCCGGTGAAAGGATATGTTTATAAA
ACGCAACCACCATCCCCGCCTCGTCGTATGAATATCGACAGACGACTCTC
AGACACGTCGATGACGACCATTGGCGAGGGGCTGCTGGAAGGCTTTGGAG
CACTACGAGAATTGTAAGAAAGCGGCCAGTTGTTGCTGTGCTGCTGCTAC
GGTTTGGTTGATGCTGTTGGTGTTGGGTTGATGCTGTTGGTGTTCTTTTG
TTTAGGCTTTTGGGTTTTGGTGGTGGTGGTGGAACCATTGTGCGCTAGTT
TCCTGCTCTCGTGGTGGATAGCGCAATCAACATCCTCGACAAACAGCGCC
CAGCATGCCTCACACATATTGGCTTGGATCAGTTTTCATGGTATCCTTTC
ACTCGTAGAAACGTTCGACCGACATTCAACGCTGCAACTTGCGTCCCTCT
CTCGGCGCTGTGTCTATGCCTGCCAGACGCATGGAGAACAACCTCTTTTC
CGCGATACCACCAGGGTTGTTTCAGGACGTGGAGGCGCTTGAGTTCTTGT
GAGATACTGTCCTCTATATATCGGCATTGATCGTATGATTACTACTCGCT
GGGGTAGGGTGGTACTGTCTCAACGGTGGCTTGACTCTGGTTGCGATTTG
CGGGATCCTTGTGAACCTAGAAGAACGAGAGTCTTCTAGTCGATTTTGGC
ATATTATATCACCCTGAGTGCGAGAGCAGCGAACAGGGGTACACACAAAC
GGTTTGGTTGGACCACTTGCTGGAAGTATTTCACGATCTAGCTGAAGGGG
ACGGATCAGTCACGTGCGCCAAGTACGGATAATGGTTCTAAGTGTGCACG
TCTGTAGCTGTAAAAACAAGCAAAGTCAACACTGCAAGGAACATAATTTG
ATCAAACCGGGAATGACTATATTCCCTCTTCTTCGTATGCTCCATTACGT
GCTTCAGGAGCTTCCAGCACAACGAGCTAGAGTCTCTACCTTCCGGCATG
TTTGATGGGATGAGTCATCTTTTGAGTCTGTGAGTGCTCTCGGTCTCTCC
ATTGGGCCGAAAATTGCGTCAGAATGGTAGGGTGTGTATGAGATTTGTCC
TTCAGTCGATCATCTCCTAACCAGTTGCTCGATGCTGACTTCGCCACGAC
TAGTTTTAACATCAGAGCTCTAAAATGGCTTTGATGAATGATGGTAACTA
CCAACATCACACCGAGCAGTTGTCTGTTTCTCCTTGGGTTGATGCTTTGC
AACAACATCCACCGTGAGGAAACATCGTGTACGTGTGGATGTCGCTAAAC
TCGCCTGGTCCCCTGCCCTGAACTCGCAACAGGGATCTTGGTTCTAACCG
ACTAAACTCGTTGCCTGAGGGTGTCTTCGGGACTTCAAGCGGGCTAGGCT
CGCTGAAGTCGCTGTGAGTTCGTGGGGCACCAATGATTGGTTATCGTGTT
CCATGCCGCAGAGACGTGACAAATTTCGTGTTTGTGAGATGTCGGCTACT
ATGCTCACGTGGGAAGGTCAGCCTTCTCACCCATCTGTGATTGAAACCGT
GAGAAAAAAGTGTGAGATGGCCTTCCTTGCGCGGCGATTTTAAGGCATGC
TGTCCAAGGCTTCATTGCATAAGAAGTCGTGACCGCTCCCTTCCCATGTA
TTGACGCCCTCCCAGAGGGAATTCATCCGCTTTTAGCCTGAAGGCCAGAT
ATTGAATGAAGCAGATATTGAACACCGTCCCCCATGTCGTCGGTGCATCC
ACTACTGGGTCCAAGAGTGAATAGTCTCTTCAAGGAAACCAACGCTATGA
ACATGAATATATACCACGCTCTCGCTCTTGCCCTACGGCAATGATAGCCG
CTTCGCATGGTTGGTAACTGTGCGGCGCGTCTCATAGTAGTGTGCAAGGA
ATATTTCCGCGACGTTTCGGCTCATGCTAGTGAATCCCATTGTCTGCGGC
AGGAAGGCTCGGTTTGTCACTCTGGGTATTTTCAGCTTTCGGCAATCAAT
ATGCCGCGGGTGTGGTCGCACAGGCTCGATTACCAACGGGAACGACGCGA
TCAATGATCTTTGGTGGACAAAGATCTTACGCTTTCGGAGCTAGTCCTTT
CACCCCCTGATTGCGTGCGTTCTCCCCTCCGGGTGCCCCAGGTATTTAAA
CGACAACGGTCTATCAACACTCACAGCGGAGGATTTCGGGGGTCTCGAGG
CTGTTTCAACTCTGAACTTGAGTGCCAACACCTTGAACTCCTTGCCATCG
GGGCTCCTGGCGACCCTCACGGCCCTCATTGTTCTGTAAGTTGTTGGATG
ATACGCGCACCTCCAACAATGGCAATTAATCGCCGCTTCGTCCAATCAAG
ATCGATTGTTTCCTCCTTTGTCGTCGGAAGCGATCTCGTCACAGACCTTG
TTGTTCTTATCTTCTACCACCCTATTCCCTCAGCTGGTTGTCGCGATATT
TTCCCCGAACATTGCGCCGTCGGTCGGGAACGGTTTGTACTCCGGAACAC
GAAGCTACAGCATCTACGCATAGGTTCATCTTCCAGCTTCATGGCGCCAA
GGGCACAACCTCTATGGAAGGGCATTCGTGCCTTGCGATAGTCCTTTCAG
CGGTTAAGAAGAATTCCCAGTTGTACCTGTGTCGTGCTTGGGAAATAGAC
GGCACATGTGAACAAAGCGTGTTCTCATGAAACATTTGATACCCCCCCCC
GTTCAATCCCCGTCATGGTCGTTGCAATCGTTCGGGTATGTGTCCACACG
TGTGCACGCCGCACGTTGAGAAGCAACAGTCAGAACCGATCCGAAAACCG
ATCAGAAAACCGGTAGATGCTTGATTGTTTCATCGCAAGGCTTTCACATG
TTATAGGCTTCAATATTTCGCGTGCTTTCACAATATTACCACATTCAGCT
GTCAACCCGCCCCTCTGCAGCAAACCTCACTAATCTAACACCAACCCCAC
CTCCACGCATCTTCGACCCCCCCTTCGCGCGATGATCAGCACGCTGGACT
CGAACGGCCTCAGTGTGCTCCCTGTTGATAGCTTCGATGGCCTGGATAAG
CTTCAAATCCTGTAAGTCTGCCTGCCTGTTCGCTCGTGAATGGCTAACGT
GATCGACGGGAGTAACGGGATACGTTTTGTCGAACCGCGCTCGCAATGTT
CCTGGCGGGTGTAGAAACACAAGGTGACGAAATTTCCGCCACAGGAACCG
TGCCATGTTGGAAGCGGGGGGAGTGAGAGATGCCACCGCCGTCGCCTCTC
GCCTGGAATGCAGTTCTTCGGCGAAAAAAAGTATTTGCAGTACGGCTGAG
GCATGGCCCAAAAGTCCCCAAAGTACCAATAATGTTCGCACTGGAGCAAG
CTCGATATACTCTACTGTTGTCCTGGCAGGCGACTACTGACTGTGTGCAC
GCATGCGTTATTATTCTTGGAAGGCGGTGCTTGCTTGGTAAACCAAACAG
TTGTGGCTACCATCTGACCTCGCACGTGTATCGTGCAATCGTCGCTCTAT
CCGTTAGAACACAGGCGCTGTGACAGTAGCTTGAAAAATGTTAGTTCAGG
GTCCCATATCTCCCGAAGGCGATTGAGCCCAAACATATGTCCCAAAGAGG
CGAACGCAACTGACTCGATGGGGGAGCCAGTTGCTGTATTTACACATTTA
TCAGTCACGCCTTCTAGAACCCGGCTAGTGGCATGAATATCACCAGATGA
ATGCTGGATATTATAGACGCCCCTACGAACAGTGGATCTCCTATCCTTAC
GGCGTCGCAAACCTTTCCAGGACCAAAGAGAGCGTATTTCAAGCGAATAG
CGCAAAATCCCCGAGAAAAACACAAAAAATGCACATGTTGATGGCAGATA
CCGACGGTACACAAAACCCACACTGAGAGAACGGTAGAGGAAAATATATG
TCCACACCTATCATGAACTAATCAGTTTGAATACAACATCGACGAAAGGT
TTCGGGTTTCTCCGAGTTGTGCATCAAACGCTGGAACGCTGTGCTTGATC
GCAATATCTCTCAGGTGCACCTGCAGGCAAAGCTGTATGATTTCATCTGA
AGCTGGTGGCGTCATCCGCAATTGATACTACGAATTCGGTTTGATACTCG
ACCCATGTCGTAAATTTGAGTCGTGTTGAACCGTGCTCATACCGGCAACA
ACGGCAAGGGTAGTTGTCCTCTCCTCGGTCCCTCAAGGCCGCTCCGGAGG
GATGCAGCATCATGCCATTTGGCGCTTAGCCAGTTCTGACGCGATTCGTT
TTCTCTGTACTCCCTTCTTCGTCCCAAACAAACAGCTACCTGAATAACAA
CGCTTTGAGCACCCTCTCGGCCGGGCTTCTGGCAGACCTCGCATCGCTTA
CAAGCCTGTAAGACGATATGTTGTTTCTGGGTTTCAACCTGCATTTGACC
TATCGCTCTTAGGTGGGCCCTGGGCACGGCGGGCCAAGTTGTATATCCGC
ATGTGTCTCGCCGTTTGAACTCCATCAAAACTTGTAGGGTGTTGGTAGAT
TAGCTGTGGGTTCGGCCTTACGTTGAGGGGAGGGCTCTGTGGGAGCAGGT
TCAGCTCAATTGGTATGCATCAAAGATACTGCTGCGATAGACGGTATATG
ACAATTACGGTCGTGTGTCGTGACTAGGGAAATCTAGGCAGATGCTGTAC
TAGAGTCGAGAGATGCTGCAACCCCTTGCGTTGTTCGTTCATTTTGCGAT
GAAGAGAAAAACAACGAACCTCTTCTTCCTAATCTATCATATCTCCCACC
TGGGCATCTACGACGGTATTGGATGGGCTGGTGGTTGTCGCAAAGGGACT
TGAGTGGGAACGACGATCTCCAATGCGTACCATCAACGGCCGGGTGAGAT
TGCTTTAGGTGACACACGGGAGCCTCCGACGTGTAGTAGGTGCTTCGTCC
TCCACGCCCTTGACAACATAAAATATAACGTGAGCCTTGCAGTACGCAGG
GTGGTTACGATTTATGAGGAAAATCTCGCCCTTGTTGCGCGTGTAGCTCC
GAAATCGCGACGGCTTCGGCGAAAGAGCGGCCGAACTCGCATCCACCAGC
GCACAATCGACTTCGTTGGGGCATGCGCACTTGAACCCCATGCAGCAGCG
ACTCTTCAGACTGTTGATTAAACACCCAGCGGCAACCTTATTTACCGGCA
CAGCCCGCGTGATTGGTTTGCAGGACGAAGCTCAGTGAAACCACGCTTCT
GGTTCCCGAGGGCGTCGGAGAAATGTGTGGTGAGTGCGCCAGTATGGTCA
AGTCCACACCTACCGCCGGTGAAAGTCACTCGCCATATCGATTTGGTAGG
AATACCATCAACAGGCCGCATTGATTTGGGAACGATGAGTTCTTGCAGCC
CAGCGGGCGTCGGCGGCTTGTGCTTGCCGTCTCCCACCAATGGGTCAAGC
CAAACAATAGATGTGTGAATCGCCGCGAAAACATCTCTGTACTTTAGCAC
GAACCCTCCTCACCCACATACGTTCAAAGACCCAAAGCGTCGGGGGCGGA
ATATATGAATGGTTAGCTTTCTCGTGGTACACGCCCCGCACAAGATCAGG
AACTACACAATCACCATGTCAATCATGTCTCGAGTGCTTAACGGATCATC
CCTGAGGTTGTCGCCTATTTCGCAAAATGACCCTTCCTTTCAGCTTGTCC
AGATGAGGGAGTCGACGTCTCGTGCCTTGACTGCGAGCCGGGCGTGGACG
GCTACATATGTACTGGTAAGTTGTTCTGGTATTTTGTTCAAGTATTTAAA
CATTGGCACTTGAACACTTGCCTACTACACCACCTTTGACGCCTGGAGTG
CAATGTGTGACTGCTTTCAGAGCTCGGCACTTGATTGTTGCGAATTTCAG
CCTCTCAAACAATTGAAACTCCAACTTGATCCTACGTATAGGTGAACAGT
GAACATTGTCTCCATAGAGTATTGACTCGTTGAGTTATTCTACACAGGAG
ATGAGAACCGAGCCTCTGAGGGAACAGTCTCCCGCACTTTCTACAGTTTT
GCTAAACTGCCCATGGGACACCCATGGGCTGCTCATTGACGTTTTGATGC
CCATGGGCAACCCATGGTGGGCAAGTCATGGGCTCATGGGCAGCCCATGG
GCGGCCAATGAGTGCCCTTCACCCGAAACCACTCGGTACTCGTAACCAAC
AGAATATCTGCTTTGGAACGGGCATTCTAACGGCTACTAACCCTAACGCT
AACGCTAACCCCAACGCTAACCCCAAGCCTACGCGATAAGTGCTGGGTTG
GCGCTGGGTGCCTAAGTTCTAGGTTGATGCGCCGATGGCTAAGTTCTTGG
TGGATATGCCGGTGGCGAGTTCTAGATTGAAATGCCCACGGTGGGCCGCG
CATGGGCAGTTCATGGGCTGCCCATGGGCCAACCCACGGGCAACACATGG
GCAGCCCACGGACGTCCCATGGGAGGGTTAGCGAAACTGCCATTAGTGTG
GGAGATTGGGAAAAACGAGACGGTTTAAAGTGGCGGCGCCTTCTGTAGTG
AAACTTGAACTTCGTCTTGATTCCTATGTCCGAAACACTTTGTTTGCGCC
CTCCTTGCCCCATTGACGTCTGCTCACAGCCATAACGCCACAACCTACCT
CGGCACCCACACCCGCACCTACACCAGGTGAACATGTCTGAGCTATATGT
GGCTGGTGTCACGGTTGGCCGTACCGCAGACCCGGCATGTTCGTAGAGAT
TGCTGGTTGTCGGTAGGGGTGCGAGTATCGTTCTCGTCCAAGCTCACACC
TGAATCTGCATCCCATCATCACCGCACTCGTGTGGTGACCGGGGGTTGGA
ATATGTACAAGCACAGAAATCGCGTTTCCTTGTTTTTAACAACTTGGCCC
CTTATTCCCGCAAGCCCTCGTACATCCGTAAAATAACTCAGGGTTGGTTG
GCCTCTCTGTCGTTATGTTGATCACTCGCAGCCCCCTGGCACCCGGTTGA
GGGTTGTATGTCTTCCGCGGAAGAGTGCCAAGAAGACCCCGAATGCATGG
AATGCCACACCATCACCGATCAGGAGAGATGGAACTCGTGCACAGCCTCC
ATCGACGTGAATGATGGGTGCGCTGCCTTCGGGCAGCATTTTTGCTGTCT
CGACGAGCAGTCTACCAGCGACTGTTCAACCAACGACCGAGCCCAAGCCT
ACGTTTCGTGTATATCGGAAACGGCCGGTCTGCAGTGTTCCGCATGGTCG
TGCGTTGGAGAGGCAAATACCAGCGGAACCGGAGCGTCTACTGTCGAGAC
TGACAGCGAGACTGACAGCAATACTGCCGCTGCACTTCGCGAGTCACTGA
CGGGCTTGAACAACTTCGTCGGCGCTGCGATGACAGTCGCGGGGTTCATT
TTGACCGTTGTGGGGGCGAAATAG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig780:5414..14637+

>mRNA_E_fasciculatus_S2_contig780.15969.1 ID=mRNA_E_fasciculatus_S2_contig780.15969.1|Name=mRNA_E_fasciculatus_S2_contig780.15969.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1401bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig780:5414..14637+ (Ectocarpus fasciculatus EfasUO2)
GGTACGAACGAGTGTTTGAAATCGACGGATAACAGATGCCAGGCAGGTGC
AGCTGCAATCTCGTTCGTCGGGTGCGATTTGGGCGACGAGGACATGGATG
ATCTTGGGTCGTGCTTTGACGCAGCTGGAAGAGGAACGATCACAGAGTTA
CGACTCTCAGACACGTCGATGACGACCATTGGCGAGGGGCTGCTGGAAGG
CTTTGGAGCACTACGAGAATTACGCATGGAGAACAACCTCTTTTCCGCGA
TACCACCAGGGTTGTTTCAGGACGTGGAGGCGCTTGAGTTCTTGAGCTTC
CAGCACAACGAGCTAGAGTCTCTACCTTCCGGCATGTTTGATGGGATGAG
TCATCTTTTGAGTCTGGATCTTGGTTCTAACCGACTAAACTCGTTGCCTG
AGGGTGTCTTCGGGACTTCAAGCGGGCTAGGCTCGCTGAAGTCGCTGTAT
TTAAACGACAACGGTCTATCAACACTCACAGCGGAGGATTTCGGGGGTCT
CGAGGCTGTTTCAACTCTGAACTTGAGTGCCAACACCTTGAACTCCTTGC
CATCGGGGCTCCTGGCGACCCTCACGGCCCTCATTGTTCTCACGCTGGAC
TCGAACGGCCTCAGTGTGCTCCCTGTTGATAGCTTCGATGGCCTGGATAA
GCTTCAAATCCTCTACCTGAATAACAACGCTTTGAGCACCCTCTCGGCCG
GGCTTCTGGCAGACCTCGCATCGCTTACAAGCCTGGACTTGAGTGGGAAC
GACGATCTCCAATGCGTACCATCAACGGCCGGGACGAAGCTCAGTGAAAC
CACGCTTCTGGTTCCCGAGGGCGTCGGAGAAATGTGTGCTTGTCCAGATG
AGGGAGTCGACGTCTCGTGCCTTGACTGCGAGCCGGGCGTGGACGGCTAC
ATATGTACTGCCATAACGCCACAACCTACCTCGGCACCCACACCCGCACC
TACACCAGCCCCCTGGCACCCGGTTGAGGGTTGTATGTCTTCCGCGGAAG
AGTGCCAAGAAGACCCCGAATGCATGGAATGCCACACCATCACCGATCAG
GAGAGATGGAACTCGTGCACAGCCTCCATCGACGTGAATGATGGGTGCGC
TGCCTTCGGGCAGCATTTTTGCTGTCTCGACGAGCAGTCTACCAGCGACT
GTTCAACCAACGACCGAGCCCAAGCCTACGTTTCGTGTATATCGGAAACG
GCCGGTCTGCAGTGTTCCGCATGGTCGTGCGTTGGAGAGGCAAATACCAG
CGGAACCGGAGCGTCTACTGTCGAGACTGACAGCGAGACTGACAGCAATA
CTGCCGCTGCACTTCGCGAGTCACTGACGGGCTTGAACAACTTCGTCGGC
GCTGCGATGACAGTCGCGGGGTTCATTTTGACCGTTGTGGGGGCGAAATA
G
back to top