mRNA_E_fasciculatus_S2_contig78.15967.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig78.15967.1
Unique NamemRNA_E_fasciculatus_S2_contig78.15967.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig78.15967.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K524_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 1.530e-52
Identity = 102/132 (77.27%), Postives = 107/132 (81.06%), Query Frame = 1 
Query:    1 RTPQESLLHGTAGRYTSN---INAIADNNNNYHNEHSNRWGRKEPETGVVVERFRRQQDPQKQPQKQLSPHFRDAAPRGEAQLLLSCRGATANAEIFADRTTRVRDRSPPAEKGLRRPSTTTATHSTEVCID 387
            RTPQES +HGTAGR TSN   INA ADN+NNY NEH +RWGRKE ET V  E  RRQ DPQKQPQKQLSPHFRDA  R  AQLL+SCRGAT NA IFA RTTRVRDR+P AEKG RRPSTTTATHSTE CID
Sbjct:  888 RTPQESRVHGTAGRCTSNNTNINAAADNSNNYPNEHGDRWGRKELETSVAFEGARRQLDPQKQPQKQLSPHFRDATSRPNAQLLVSCRGATGNANIFAGRTTRVRDRTPRAEKGARRPSTTTATHSTEACID 1019
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig78.15967.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.530e-5277.27protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig78contigE_fasciculatus_S2_contig78:23479..23866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size389
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_004710.1
Cds size387
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842441.4679089-CDS-E_fasciculatus_S2_contig78:23478..238651696842441.4679089-CDS-E_fasciculatus_S2_contig78:23478..23865Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig78 23479..23865 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig78.15967.1prot_E_fasciculatus_S2_contig78.15967.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig78 23479..23865 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig78.15967.1

>prot_E_fasciculatus_S2_contig78.15967.1 ID=prot_E_fasciculatus_S2_contig78.15967.1|Name=mRNA_E_fasciculatus_S2_contig78.15967.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=129bp
RTPQESLLHGTAGRYTSNINAIADNNNNYHNEHSNRWGRKEPETGVVVER
FRRQQDPQKQPQKQLSPHFRDAAPRGEAQLLLSCRGATANAEIFADRTTR
VRDRSPPAEKGLRRPSTTTATHSTEVCID
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mRNA from alignment at E_fasciculatus_S2_contig78:23479..23866+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig78.15967.1 ID=mRNA_E_fasciculatus_S2_contig78.15967.1|Name=mRNA_E_fasciculatus_S2_contig78.15967.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=388bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig78:23479..23866+ (Ectocarpus fasciculatus EfasUO2)
AGAACACCGCAAGAGAGCCTTCTTCACGGCACGGCAGGGAGATACACCAG
CAACATCAACGCCATCGCCGACAACAACAATAACTACCACAACGAACATA
GCAATCGGTGGGGCCGCAAAGAGCCGGAAACTGGCGTCGTTGTCGAACGA
TTTCGCCGACAGCAGGACCCACAAAAACAGCCGCAGAAGCAGCTCTCGCC
ACACTTCCGCGATGCTGCTCCTCGTGGTGAGGCACAGCTGTTACTATCTT
GCCGTGGAGCAACAGCTAATGCTGAAATCTTCGCCGACAGAACAACCCGG
GTCCGCGACCGGAGCCCCCCGGCTGAAAAGGGGCTTCGACGACCATCAAC
AACTACAGCCACACACTCAACCGAGGTGTGCATCGACC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig78:23479..23866+

>mRNA_E_fasciculatus_S2_contig78.15967.1 ID=mRNA_E_fasciculatus_S2_contig78.15967.1|Name=mRNA_E_fasciculatus_S2_contig78.15967.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=387bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig78:23479..23866+ (Ectocarpus fasciculatus EfasUO2)
AGAACACCGCAAGAGAGCCTTCTTCACGGCACGGCAGGGAGATACACCAG
CAACATCAACGCCATCGCCGACAACAACAATAACTACCACAACGAACATA
GCAATCGGTGGGGCCGCAAAGAGCCGGAAACTGGCGTCGTTGTCGAACGA
TTTCGCCGACAGCAGGACCCACAAAAACAGCCGCAGAAGCAGCTCTCGCC
ACACTTCCGCGATGCTGCTCCTCGTGGTGAGGCACAGCTGTTACTATCTT
GCCGTGGAGCAACAGCTAATGCTGAAATCTTCGCCGACAGAACAACCCGG
GTCCGCGACCGGAGCCCCCCGGCTGAAAAGGGGCTTCGACGACCATCAAC
AACTACAGCCACACACTCAACCGAGGTGTGCATCGAC
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