mRNA_E_fasciculatus_S2_contig78.15966.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig78.15966.1
Unique NamemRNA_E_fasciculatus_S2_contig78.15966.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig78.15966.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXB3_ECTSI)

HSP 1 Score: 422 bits (1085), Expect = 6.260e-146
Identity = 224/261 (85.82%), Postives = 236/261 (90.42%), Query Frame = 1 
Query:    1 MGRASPHKVSVFVDAVSSAIGPAMMETTTGRDGTHRAGTAGGAAATLPSPQSTAATTTARDRNTWRRQNGDLAMRNTEMSRGVLNNNHSFEKSTLRERGHQRGRQTDSGRSGDEISKRNPAALRQNGGVGGDVIAGVDAGGDASGGGGTFDEQVPCDAVEFAQERRKMLDPPKVDMSAIATVQAAFARNFAFHKHGDKFTDIAVRSSLKNIITSEGPGRLIGLLSHYLYWIMLLPFVLAHKDRDDCVLLKNDYRLSIRKQK 783
            MGRASPHKVSVFVDAVSSAIGPAMMETTTG+DG HRA TAGGAAAT+PSPQS AATTTARDRN WRRQNGDLAMRNTE SRG+L NN +FEK   RERGHQ GRQ ++G SGD +SKRNP AL+Q GGVGGDV AG D GG     GGTFDEQVPCDAVEFAQERRKMLDPPKVDMSAIATVQAAFARNF+FHKHG+KFTDI+VRSSLKNII SEGPGRLIGLLSHYLYWIMLLPFVLAHKDRDDCVLLKNDYRLS+RKQK
Sbjct:  105 MGRASPHKVSVFVDAVSSAIGPAMMETTTGKDGAHRADTAGGAAATMPSPQSKAATTTARDRNAWRRQNGDLAMRNTETSRGLLTNNRNFEKRAQRERGHQHGRQANTGASGDGVSKRNPVALQQKGGVGGDV-AGSDGGG-----GGTFDEQVPCDAVEFAQERRKMLDPPKVDMSAIATVQAAFARNFSFHKHGEKFTDISVRSSLKNIIMSEGPGRLIGLLSHYLYWIMLLPFVLAHKDRDDCVLLKNDYRLSMRKQK 359
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BLAST of mRNA_E_fasciculatus_S2_contig78.15966.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K524_9PHAE)

HSP 1 Score: 411 bits (1056), Expect = 1.010e-132
Identity = 221/261 (84.67%), Postives = 232/261 (88.89%), Query Frame = 1 
Query:    1 MGRASPHKVSVFVDAVSSAIGPAMMETTTGRDGTHRAGTAGGAAATLPSPQSTAATTTARDRNTWRRQNGDLAMRNTEMSRGVLNNNHSFEKSTLRERGHQRGRQTDSGRSGDEISKRNPAALRQNGGVGGDVIAGVDAGGDASGGGGTFDEQVPCDAVEFAQERRKMLDPPKVDMSAIATVQAAFARNFAFHKHGDKFTDIAVRSSLKNIITSEGPGRLIGLLSHYLYWIMLLPFVLAHKDRDDCVLLKNDYRLSIRKQK 783
            MG+ASPHKVSVFVDAVSSAI P MMETTTG+DG HRA TAGGAAATLPSPQS AATTTARDRN WRRQNGDLAMRNTE S  VL NN +F+K T RERGHQRGRQ  +G SGD +SK  PAALRQ+GGVGGDV+A  D GG     GGTFDEQVPCDAVEFAQERRKMLDPPKV MSAIATVQAAFARNFAFHKHG+KF DI+VRSSLKNIITSEGPGRLIGLLSHYLYWIMLLPFVLAHKDRDDCVLLKNDYRLS+RKQK
Sbjct:  188 MGKASPHKVSVFVDAVSSAILPVMMETTTGKDGAHRADTAGGAAATLPSPQSKAATTTARDRNAWRRQNGDLAMRNTETSCVVLTNNRNFDKRTQRERGHQRGRQASTGASGDGVSKIFPAALRQSGGVGGDVVAVGDGGG-----GGTFDEQVPCDAVEFAQERRKMLDPPKVGMSAIATVQAAFARNFAFHKHGEKFKDISVRSSLKNIITSEGPGRLIGLLSHYLYWIMLLPFVLAHKDRDDCVLLKNDYRLSMRKQK 443
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig78.15966.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized6.260e-14685.82protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.010e-13284.67protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig78contigE_fasciculatus_S2_contig78:16431..18238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size783
Hectar predicted targeting categoryother localisation
Exons4
Cds size783
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842441.5006213-CDS-E_fasciculatus_S2_contig78:16430..164541696842441.5006213-CDS-E_fasciculatus_S2_contig78:16430..16454Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig78 16431..16454 +
1696842441.5111597-CDS-E_fasciculatus_S2_contig78:16722..172171696842441.5111597-CDS-E_fasciculatus_S2_contig78:16722..17217Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig78 16723..17217 +
1696842441.521033-CDS-E_fasciculatus_S2_contig78:17527..176731696842441.521033-CDS-E_fasciculatus_S2_contig78:17527..17673Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig78 17528..17673 +
1696842441.5310888-CDS-E_fasciculatus_S2_contig78:18120..182381696842441.5310888-CDS-E_fasciculatus_S2_contig78:18120..18238Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig78 18121..18238 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig78.15966.1prot_E_fasciculatus_S2_contig78.15966.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig78 16431..18238 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig78.15966.1

>prot_E_fasciculatus_S2_contig78.15966.1 ID=prot_E_fasciculatus_S2_contig78.15966.1|Name=mRNA_E_fasciculatus_S2_contig78.15966.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=261bp
MGRASPHKVSVFVDAVSSAIGPAMMETTTGRDGTHRAGTAGGAAATLPSP
QSTAATTTARDRNTWRRQNGDLAMRNTEMSRGVLNNNHSFEKSTLRERGH
QRGRQTDSGRSGDEISKRNPAALRQNGGVGGDVIAGVDAGGDASGGGGTF
DEQVPCDAVEFAQERRKMLDPPKVDMSAIATVQAAFARNFAFHKHGDKFT
DIAVRSSLKNIITSEGPGRLIGLLSHYLYWIMLLPFVLAHKDRDDCVLLK
NDYRLSIRKQK
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mRNA from alignment at E_fasciculatus_S2_contig78:16431..18238+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig78.15966.1 ID=mRNA_E_fasciculatus_S2_contig78.15966.1|Name=mRNA_E_fasciculatus_S2_contig78.15966.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1808bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig78:16431..18238+ (Ectocarpus fasciculatus EfasUO2)
ATGGGAAGAGCGAGTCCTCACAAGGTGCCATGCCACACTTCGTCACGCGG
GGCATTGTAAACAACAACAGGCAATACAAGTAGCATCTGAGGCTGTTAGA
GATCTCGGTCAACACGGCAAAGATTGGCTTGGGTTTTTATCAGAGAAGCA
GAGCCCGGCATGCTCTGAGAAACCGGACGATGTACTTGGGAACAGGGATC
AAGGGGTCATGCCCTGCCTGCCGGGGCACGCACCGTCACCGCCACCACCT
CACCACTTCCGCCCCCTGTGCGTAAATGTACGGAATCAACAGGTCAGTGT
TTTCGTGGACGCCGTGTCATCCGCCATAGGACCGGCGATGATGGAAACAA
CTACGGGCAGGGACGGTACGCATCGTGCTGGTACGGCTGGGGGGGCAGCA
GCGACATTGCCGTCGCCTCAGTCGACAGCGGCAACAACCACCGCCCGCGA
CAGGAACACCTGGCGCCGACAAAACGGCGACCTGGCCATGAGAAACACCG
AGATGAGTCGCGGGGTCCTTAACAATAACCACAGCTTCGAGAAGAGCACT
TTACGGGAGCGGGGCCACCAGCGTGGTAGACAAACGGACAGCGGAAGGTC
CGGGGATGAGATTTCCAAAAGAAACCCGGCGGCCTTGCGCCAGAATGGGG
GTGTGGGAGGTGATGTTATTGCCGGGGTCGATGCCGGGGGCGATGCCAGC
GGCGGCGGTGGAACCTTCGACGAGCAGGTGCCCTGCGATGCGGTGGAGTT
TGCTCAGGAGAGAAGAAAGATGCTTGACCCTCCCAAGGTGAAGCGTGAAT
GAATTCTGTCGTCGTTTTTTTGTTGTTTTCTCTAGCCGAGAACGCAAAGC
GTATGGGTGAAGGCACAGCTTCTGCCACGTTCGCATAGTTCAAGTGTCTA
TGGCATTGTTGAGGACGATTTTGAACTGATAGGACGATAGTGCACAATCC
ATGCTGTGCAGCACGGTGTACTATGCGTGCAGTTTGGGTTCACGTAGTGT
GCCGTGGTATGTTCGCAAAGAGAGTTTAGAATAAACCTGTCCTCCGCCCC
TCCTGCATACGTCTGCGTACTGCTTGCGCACTCATTCAATCCTCAAGGTG
GATATGTCAGCTATCGCAACTGTCCAAGCCGCTTTTGCAAGGAATTTTGC
GTTCCACAAGCACGGAGACAAGTTCACAGACATTGCAGTGCGGTCGTCGC
TCAAGAACATTATCACGTCCGAGGGTCCGGGGAGGCTAATCGGGTGAGCG
GAGGCAACAGGCAGATGGCGACCATACTTAGTACAAGAGCCGATCTATCC
CGTTTCGACGAGTTCTCCCACCCCTGTCACCGCAGATGTAGGCAGTACTG
CTTCTAGCGTGTTTTTTTAAAATCTGATTTCAAGATGCACATAGGCAGGA
CGATGGGGTTCAACGTGCATGGCATTGCTAAGACCAGACGTCGTTACATG
CCAATACTTCCAAAAATCGCTATTTTTGAACGAGACGAAAGTTTGAGTTG
GTTTTTCCAACAGCAGTTGTCTTTGGCTTGGCAAAAGGGCGGTGTTTTCG
CCGGATAACGTGATGCGCTGAACTGCATTCCATCCCCATGAAATAGAGTT
TGAAATCATTATTATCCGATGTGCAGAGAAGCGGTGCTCTGTTCTTCTTC
TTATTCGCTGCGTTTGTTCCTCTCGATGCTTTGGGTGAAGGTTGCTGTCC
CACTACCTGTACTGGATCATGTTGCTCCCCTTCGTGCTGGCGCATAAGGA
CCGCGACGACTGCGTGCTTCTCAAGAACGACTACCGCTTGTCGATAAGGA
AACAAAAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig78:16431..18238+

>mRNA_E_fasciculatus_S2_contig78.15966.1 ID=mRNA_E_fasciculatus_S2_contig78.15966.1|Name=mRNA_E_fasciculatus_S2_contig78.15966.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=783bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig78:16431..18238+ (Ectocarpus fasciculatus EfasUO2)
ATGGGAAGAGCGAGTCCTCACAAGGTCAGTGTTTTCGTGGACGCCGTGTC
ATCCGCCATAGGACCGGCGATGATGGAAACAACTACGGGCAGGGACGGTA
CGCATCGTGCTGGTACGGCTGGGGGGGCAGCAGCGACATTGCCGTCGCCT
CAGTCGACAGCGGCAACAACCACCGCCCGCGACAGGAACACCTGGCGCCG
ACAAAACGGCGACCTGGCCATGAGAAACACCGAGATGAGTCGCGGGGTCC
TTAACAATAACCACAGCTTCGAGAAGAGCACTTTACGGGAGCGGGGCCAC
CAGCGTGGTAGACAAACGGACAGCGGAAGGTCCGGGGATGAGATTTCCAA
AAGAAACCCGGCGGCCTTGCGCCAGAATGGGGGTGTGGGAGGTGATGTTA
TTGCCGGGGTCGATGCCGGGGGCGATGCCAGCGGCGGCGGTGGAACCTTC
GACGAGCAGGTGCCCTGCGATGCGGTGGAGTTTGCTCAGGAGAGAAGAAA
GATGCTTGACCCTCCCAAGGTGGATATGTCAGCTATCGCAACTGTCCAAG
CCGCTTTTGCAAGGAATTTTGCGTTCCACAAGCACGGAGACAAGTTCACA
GACATTGCAGTGCGGTCGTCGCTCAAGAACATTATCACGTCCGAGGGTCC
GGGGAGGCTAATCGGGTTGCTGTCCCACTACCTGTACTGGATCATGTTGC
TCCCCTTCGTGCTGGCGCATAAGGACCGCGACGACTGCGTGCTTCTCAAG
AACGACTACCGCTTGTCGATAAGGAAACAAAAG
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