mRNA_E_fasciculatus_S2_contig7797.15965.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7797.15965.1 vs.
Match: Complex1_LYR_dom (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRV6_ECTSI) HSP 1 Score: 166 bits (420), Expect = 1.200e-46 Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 1
Query: 70 MAQPSRTAVLGLYKGLRRQGALLMDYNYREYALRRARRGFELARGFAPEEAEAAFKKGQRELDIVRRQAAISQLYPHQTSVMETMTP 330
MAQPSRTAVLGLYKGLRRQGALLMDYNYREYALRRARRGFELARGFAPEEAEAAFKKGQREL+IVRRQAAISQLYPHQTSVMETMTP
Sbjct: 1 MAQPSRTAVLGLYKGLRRQGALLMDYNYREYALRRARRGFELARGFAPEEAEAAFKKGQRELEIVRRQAAISQLYPHQTSVMETMTP 87
BLAST of mRNA_E_fasciculatus_S2_contig7797.15965.1 vs.
Match: Hypothetical (protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P523_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 1.500e-13 Identity = 39/79 (49.37%), Postives = 55/79 (69.62%), Query Frame = 1
Query: 82 SRTAVLGLYKGLRRQGALLMDYNYREYALRRARRGFELARGFAPEEAEAAFKKGQRELDIVRRQAAISQLYPHQTSVME 318
++ AV LY+ L R+ L DYN+R YA+RR ++GFEL R A E AA + G+R+LD+++RQ+ I Q+YP TSVME
Sbjct: 29 TQPAVKSLYRSLAREAKRLSDYNFRTYAIRRVKKGFELNRNLAGLEINAAIEDGKRQLDMLKRQSTIGQMYPGATSVME 107
BLAST of mRNA_E_fasciculatus_S2_contig7797.15965.1 vs.
Match: Complex (1 LYR protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGY8_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 2.310e-10 Identity = 37/79 (46.84%), Postives = 50/79 (63.29%), Query Frame = 1
Query: 73 AQPSRTAVLGLYKGLRRQGALLMDYNYREYALRRARRGFELARGFAPEEAEAAFKKGQRELDIVRRQAAISQLYPHQTS 309
A PSR VLGL++ L RQ L DYN+R YA RR GF+ R + EEA ++ G + L++++RQA IS LYP + S
Sbjct: 17 ATPSRQHVLGLFRSLLRQAGRLEDYNFRSYAKRRVALGFQEGRSSSGEEAAREYRDGVKNLEMLKRQALISHLYPSKRS 95
BLAST of mRNA_E_fasciculatus_S2_contig7797.15965.1 vs.
Match: Complex1_LYR_dom (domain-containing protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6ZHZ5_9EUPU) HSP 1 Score: 67.0 bits (162), Expect = 3.430e-10 Identity = 36/92 (39.13%), Postives = 57/92 (61.96%), Query Frame = 1
Query: 61 HFTMAQPSRTAVLGLYKGLRRQGALLMDYNYREYALRRARRGFELARGFAP-EEAEAAFKKGQRELDIVRRQAAISQLYPHQTSVMETMTPT 333
+F MA P+R+ +L LYK + ++G + DYN+R YALRR F+ + ++ +A FKK Q LD+++RQ+ I QL+ V+E+ T T
Sbjct: 2 NFKMAAPTRSTILSLYKQMLKEGQKITDYNFRRYALRRTMDAFKENKTVTDADKCQALFKKAQENLDMLKRQSIIGQLFGSDKLVIESQTST 93
BLAST of mRNA_E_fasciculatus_S2_contig7797.15965.1 vs.
Match: LADA_0A05622g1_1 (n=1 Tax=Lachancea dasiensis TaxID=1072105 RepID=A0A1G4IP04_9SACH) HSP 1 Score: 67.0 bits (162), Expect = 3.610e-10 Identity = 37/86 (43.02%), Postives = 53/86 (61.63%), Query Frame = 1
Query: 70 MAQPSRTAVLGLYKGLRRQGALLMDYNYREYALRRARRGFELARGFA-PEEAEAAFKKGQRELDIVRRQAAISQLYPHQTSVMETM 324
M PSR+ VL LYK + + + +Y+YR Y LR+A+ GF + R PE E AF QREL +++RQ+AISQ+Y V+E +
Sbjct: 1 MPAPSRSQVLALYKQIIKNASNFNNYSYRNYFLRKAKTGFRVTRDLKDPEAVEEAFVSAQRELGVLKRQSAISQMYTFDKQVVEPL 86
BLAST of mRNA_E_fasciculatus_S2_contig7797.15965.1 vs.
Match: Complex1_LYR_dom (domain-containing protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HNS0_SYNRA) HSP 1 Score: 64.7 bits (156), Expect = 2.060e-9 Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 1
Query: 70 MAQPS-RTAVLGLYKGLRRQGALLMDYNYREYALRRARRGFEL-ARGFAPEEAEAAFKKGQRELDIVRRQAAISQLY 294
MA P+ RT VL LY+ R G L YN+REYA+RR++ GF A P + +A +K QR+L++V+RQA ISQLY
Sbjct: 1 MATPATRTQVLSLYRDFLRYGNKLSAYNFREYAIRRSKDGFRAHANEAEPSKIQALIEKAQRDLEVVKRQAVISQLY 77
BLAST of mRNA_E_fasciculatus_S2_contig7797.15965.1 vs.
Match: Complex (1 protein (Fragment) n=1 Tax=Ancylostoma duodenale TaxID=51022 RepID=A0A0C2GDP2_9BILA) HSP 1 Score: 64.7 bits (156), Expect = 3.280e-9 Identity = 36/83 (43.37%), Postives = 51/83 (61.45%), Query Frame = 1
Query: 73 AQPSRTAVLGLYKGLRRQGALLMDYNYREYALRRARRGFELARGFA-PEEAEAAFKKGQRELDIVRRQAAISQLYPHQTSVME 318
AQ +++ + LYK L R+ A YN R +A RR R FE RG P + KKG+ +L+++RRQ ISQLYPH+ +V+E
Sbjct: 3 AQVAKSVWVNLYKQLEREAAKFPQYNIRVFAQRRIREHFEANRGVTDPAVQKELLKKGKEQLEVIRRQVVISQLYPHKKTVVE 85
BLAST of mRNA_E_fasciculatus_S2_contig7797.15965.1 vs.
Match: Complex1_LYR_dom (domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FPY9_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 4.600e-9 Identity = 35/85 (41.18%), Postives = 53/85 (62.35%), Query Frame = 1
Query: 70 MAQPSRTAVLGLYKGLRRQGALLMDYNYREYALRRARRGFELARGFAPEEAEAAFKKGQRELDIVRRQAAISQLYPHQTSVMETM 324
M+QP + L++ L +Q + DYN+R YA+RR R GF+ R A+ A K+GQ +L ++ RQ+ IS+LYP SVM+T+
Sbjct: 1 MSQPQ----IVLFRNLMKQATQMNDYNFRAYAIRRIRGGFDQNRLLEGNTAQMAIKEGQEQLAVLTRQSVISRLYPSAKSVMDTL 81
BLAST of mRNA_E_fasciculatus_S2_contig7797.15965.1 vs.
Match: Complex1_LYR_dom (domain-containing protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GLY9_9FUNG) HSP 1 Score: 63.9 bits (154), Expect = 4.730e-9 Identity = 35/80 (43.75%), Postives = 51/80 (63.75%), Query Frame = 1
Query: 85 RTAVLGLYKGLRRQGALLMDYNYREYALRRARRGFELARGFA-PEEAEAAFKKGQRELDIVRRQAAISQLYPHQTSVMET 321
R VLGLY+ L + YN+R+YA+RR R GF A+ P++ +A K Q++L++V+RQA ISQLY + V+ET
Sbjct: 11 RAQVLGLYRNLLHYSSRFAAYNFRDYAIRRTRDGFHAAKNETDPDKIQALIHKAQQQLEVVKRQAFISQLYSGEKLVLET 90
BLAST of mRNA_E_fasciculatus_S2_contig7797.15965.1 vs.
Match: Complex1_LYR_dom (domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z9M6_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 5.800e-9 Identity = 34/80 (42.50%), Postives = 48/80 (60.00%), Query Frame = 1
Query: 88 TAVLGLYKGLRRQGALLMDYNYREYALRRARRGFELARGFAPEEAEAAFKKGQRELDIVRRQAAISQLYPHQTSVMETMT 327
T + L++ L R+ DYN+R YA+RR R GFE R + A+ A K+GQ + ++ RQ+ IS+LYP SVME T
Sbjct: 2 TQQIALFRRLLREAKQFNDYNFRAYAVRRIRGGFEKNRHLEGDAAQIALKEGQEQFSVLARQSTISRLYPSAQSVMEAPT 81 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7797.15965.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7797.15965.1 >prot_E_fasciculatus_S2_contig7797.15965.1 ID=prot_E_fasciculatus_S2_contig7797.15965.1|Name=mRNA_E_fasciculatus_S2_contig7797.15965.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=91bp MAQPSRTAVLGLYKGLRRQGALLMDYNYREYALRRARRGFELARGFAPEEback to top mRNA from alignment at E_fasciculatus_S2_contig7797:3093..7034- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7797.15965.1 ID=mRNA_E_fasciculatus_S2_contig7797.15965.1|Name=mRNA_E_fasciculatus_S2_contig7797.15965.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3942bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7797:3093..7034- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7797:3093..7034- >mRNA_E_fasciculatus_S2_contig7797.15965.1 ID=mRNA_E_fasciculatus_S2_contig7797.15965.1|Name=mRNA_E_fasciculatus_S2_contig7797.15965.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=273bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7797:3093..7034- (Ectocarpus fasciculatus EfasUO2)back to top |