mRNA_E_fasciculatus_S2_contig7797.15964.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7797.15964.1
Unique NamemRNA_E_fasciculatus_S2_contig7797.15964.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7797.15964.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCE8_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 5.330e-36
Identity = 132/198 (66.67%), Postives = 135/198 (68.18%), Query Frame = 1 
Query:    4 IRSAEG-VGESVASPPLPPAPGLGLP----TQEHHQHHVLSHAPVARPXXXXXXXXXXXXXXXXXXADPRGPPMSVSGRSPSSPYLGGPDLLPPGXXXXXXXXXXXXXXSSLPFFQQFREANGDTGGXXXXXXXXLGVGGRSRSAGVIAAPGAGRPSLDVVGXXXXXXXXRQQRVRGKGETAGRDNGHEADGGASALE 582
            IRSA+  VGESVASPPLPPAP L LP         Q H+LSHA V  P                    PRGPPMS SGRSPSSPYLGGPDLLP GXXXXXXXXXXXXX  SLPFFQQFREANGDTGGXXXXXXXX    GRSRSAGV+A PG GRP LD  GXXXXXXXX      GKGETA      EAD GASALE
Sbjct:  841 IRSAQAAVGESVASPPLPPAPALVLPHXXXXXXQEQQHILSHASVRPPPGPVGGGREQRAEP------PRGPPMSASGRSPSSPYLGGPDLLPAGXXXXXXXXXXXXX--SLPFFQQFREANGDTGGXXXXXXXX----GRSRSAGVVAGPGTGRPGLDGAGXXXXXXXXX---XXGKGETAAEVEVAEADEGASALE 1023
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7797.15964.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized5.330e-3666.67protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7797contigE_fasciculatus_S2_contig7797:149..731 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size584
Hectar predicted targeting categoryother localisation
Exons1
Cds size582
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842441.351568-CDS-E_fasciculatus_S2_contig7797:148..7301696842441.351568-CDS-E_fasciculatus_S2_contig7797:148..730Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7797 149..730 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7797.15964.1prot_E_fasciculatus_S2_contig7797.15964.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7797 149..730 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7797.15964.1

>prot_E_fasciculatus_S2_contig7797.15964.1 ID=prot_E_fasciculatus_S2_contig7797.15964.1|Name=mRNA_E_fasciculatus_S2_contig7797.15964.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=194bp
VIRSAEGVGESVASPPLPPAPGLGLPTQEHHQHHVLSHAPVARPPPGPVG
GGRAQQQQQQQQADPRGPPMSVSGRSPSSPYLGGPDLLPPGGGDGSNEGN
HGGGSSSLPFFQQFREANGDTGGGGGSGGSGLGVGGRSRSAGVIAAPGAG
RPSLDVVGGGGGGGGHRQQRVRGKGETAGRDNGHEADGGASALE
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mRNA from alignment at E_fasciculatus_S2_contig7797:149..731+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7797.15964.1 ID=mRNA_E_fasciculatus_S2_contig7797.15964.1|Name=mRNA_E_fasciculatus_S2_contig7797.15964.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=583bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7797:149..731+ (Ectocarpus fasciculatus EfasUO2)
GTCATCCGCAGCGCTGAAGGTGTCGGCGAAAGCGTCGCCTCTCCCCCGCT
TCCGCCCGCCCCAGGCCTTGGCCTTCCCACCCAGGAGCACCATCAGCATC
ATGTCCTATCCCATGCCCCGGTAGCACGACCACCACCGGGGCCGGTCGGC
GGCGGCCGAGCGCAACAACAACAGCAGCAGCAACAGGCAGATCCCCGCGG
CCCGCCCATGAGCGTTAGCGGCCGCTCCCCGTCGTCTCCTTACCTGGGGG
GTCCCGATCTCTTGCCGCCCGGCGGTGGCGACGGCAGTAACGAGGGTAAC
CACGGTGGCGGGTCTTCGTCACTGCCGTTCTTTCAGCAGTTCCGGGAGGC
TAACGGTGACACCGGGGGCGGCGGCGGCAGCGGTGGTAGCGGCTTGGGAG
TCGGCGGAAGAAGTCGGTCTGCAGGGGTTATCGCTGCGCCTGGGGCCGGA
CGGCCGAGCCTCGACGTCGTTGGCGGTGGCGGTGGTGGGGGTGGCCATCG
CCAGCAGAGGGTTAGGGGGAAAGGCGAGACGGCGGGGAGGGATAACGGCC
ACGAGGCGGACGGGGGGGCTTCGGCGCTAGAGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7797:149..731+

>mRNA_E_fasciculatus_S2_contig7797.15964.1 ID=mRNA_E_fasciculatus_S2_contig7797.15964.1|Name=mRNA_E_fasciculatus_S2_contig7797.15964.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=582bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7797:149..731+ (Ectocarpus fasciculatus EfasUO2)
GTCATCCGCAGCGCTGAAGGTGTCGGCGAAAGCGTCGCCTCTCCCCCGCT
TCCGCCCGCCCCAGGCCTTGGCCTTCCCACCCAGGAGCACCATCAGCATC
ATGTCCTATCCCATGCCCCGGTAGCACGACCACCACCGGGGCCGGTCGGC
GGCGGCCGAGCGCAACAACAACAGCAGCAGCAACAGGCAGATCCCCGCGG
CCCGCCCATGAGCGTTAGCGGCCGCTCCCCGTCGTCTCCTTACCTGGGGG
GTCCCGATCTCTTGCCGCCCGGCGGTGGCGACGGCAGTAACGAGGGTAAC
CACGGTGGCGGGTCTTCGTCACTGCCGTTCTTTCAGCAGTTCCGGGAGGC
TAACGGTGACACCGGGGGCGGCGGCGGCAGCGGTGGTAGCGGCTTGGGAG
TCGGCGGAAGAAGTCGGTCTGCAGGGGTTATCGCTGCGCCTGGGGCCGGA
CGGCCGAGCCTCGACGTCGTTGGCGGTGGCGGTGGTGGGGGTGGCCATCG
CCAGCAGAGGGTTAGGGGGAAAGGCGAGACGGCGGGGAGGGATAACGGCC
ACGAGGCGGACGGGGGGGCTTCGGCGCTAGAG
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