mRNA_E_fasciculatus_S2_contig7788.15954.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7788.15954.1
Unique NamemRNA_E_fasciculatus_S2_contig7788.15954.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7788.15954.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0M4_9PHAE)

HSP 1 Score: 239 bits (609), Expect = 1.160e-76
Identity = 122/144 (84.72%), Postives = 126/144 (87.50%), Query Frame = 1
Query:    1 MAMKTLVLATTAVXXXXXXXXXXXXXXDTSAAVNLRPESELTDNCFGFPDNNFDRQRSIKGMYGQSPNLLLETGSGAIDFTAHDYPAGEPWNLREHLEGVGGDAGKPVVLIWGMFTCPAFQGMGDQPPIPPWDMCGYRDEYKLV 432
            MAMK LVLA+        XXXXXXXXX +SAAVNLRPESELT NCF FP NNFDRQRS+ GMYGQSP LLLETGSGAIDFT+HDYPAGEPWNLREHLEGVGGDAGKPVVLIWGMFTCPAFQGMGDQPP PPWD CGYRDEY LV
Sbjct:    1 MAMKALVLASAV----SAXXXXXXXXXXSSAAVNLRPESELTGNCFDFPSNNFDRQRSMIGMYGQSPKLLLETGSGAIDFTSHDYPAGEPWNLREHLEGVGGDAGKPVVLIWGMFTCPAFQGMGDQPPSPPWDKCGYRDEYDLV 140          
BLAST of mRNA_E_fasciculatus_S2_contig7788.15954.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKN7_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 2.150e-35
Identity = 68/115 (59.13%), Postives = 76/115 (66.09%), Query Frame = 1
Query:   91 AAVNLRPESELTDNCFGFPDNNFDRQRSIKGMYG-QSPNLLLETGSGAIDFTAHDYPAGEPWNLREHLEGVGGDAGKPVVLIWGMFTCPAFQGMGDQPPIPPWDMCGYRDEYKLV 432
            A+  LRPES+LT NCF FP NNFDR+ SIK + G  +P L L  G  A+DFT HD   G  WNL E LE  G     PVV++WGMFTCPAFQG G  PP   WD CGYRDEY LV
Sbjct:  155 ASAELRPESDLTSNCFDFPANNFDRENSIKAVNGGNTPYLPLTVGEDAVDFTLHDLK-GRRWNLGETLERTG----LPVVMVWGMFTCPAFQGYGTYPP---WDKCGYRDEYDLV 261          
BLAST of mRNA_E_fasciculatus_S2_contig7788.15954.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCJ3_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 1.660e-33
Identity = 65/115 (56.52%), Postives = 73/115 (63.48%), Query Frame = 1
Query:   91 AAVNLRPESELTDNCFGFPDNNFDRQRSIKGMYG-QSPNLLLETGSGAIDFTAHDYPAGEPWNLREHLEGVGGDAGKPVVLIWGMFTCPAFQGMGDQPPIPPWDMCGYRDEYKLV 432
            A   LRPE++LT NCF FP NNFDR+ SIK + G  +P L L  G  A+DFT HD   G  WNL E LE  G     PVV++WGMF CP FQG G  PP   WD CGYRDEY LV
Sbjct:  125 ANAELRPEADLTSNCFDFPANNFDRENSIKAVNGGNTPYLPLTVGEDAVDFTLHDLE-GRRWNLGETLERTG----LPVVMVWGMFICPGFQGYGTYPP---WDKCGYRDEYDLV 231          
BLAST of mRNA_E_fasciculatus_S2_contig7788.15954.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1L4_9STRA)

HSP 1 Score: 118 bits (295), Expect = 3.000e-30
Identity = 59/114 (51.75%), Postives = 73/114 (64.04%), Query Frame = 1
Query:   91 AAVNLRPESELTDNCFGFPDNNFDRQRSIKGMYGQSPNLLLETGSGAIDFTAHDYPAGEPWNLREHLEGVGGDAGKPVVLIWGMFTCPAFQGMGDQPPIPPWDMCGYRDEYKLV 432
            AA  LR  SELTD+C+GFPD+NF+    IK  YG SP+++L+ G+ AIDFT +D   G  W L EHL      A +PV LIWGM TCPAF+G+G   P   +D C Y DE  LV
Sbjct:    1 AASQLRDASELTDSCYGFPDDNFNGTNCIKCTYGTSPHIVLDAGAAAIDFTLYDLD-GAAWTLSEHL------ASQPVCLIWGMHTCPAFEGLGTASP---FDECAYWDEAALV 104          
BLAST of mRNA_E_fasciculatus_S2_contig7788.15954.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG9_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.730e-23
Identity = 48/90 (53.33%), Postives = 63/90 (70.00%), Query Frame = 1
Query:  100 NLRPESELTDNCFGFPDNNFDRQRSIKGMYGQSPNLLLETGSGAIDFTAHDYPAGEPWNLREHLEGVGGDAGKPVVLIWGMFTCPAFQGM 369
            +L PE+EL  NC+ FP+ NF +  SI+ +YG SP+L+ + GS A+DFT HD   G  WNL E L      AGKPVV+I+GM+TCPAFQG+
Sbjct:   26 DLLPETELITNCYNFPEENFHKGNSIRDIYGTSPHLVRDLGSPAVDFTLHDLD-GNRWNLGEVLAA---GAGKPVVMIFGMWTCPAFQGL 111          
BLAST of mRNA_E_fasciculatus_S2_contig7788.15954.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC80_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 2.370e-14
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 1
Query:  154 NFDRQRSIKGMYGQSPNLLLETGSGAIDFTAHDYPAGEPWNLREHLEGVGGDAGKPVVLIWGMFTCPAFQGM 369
            NF +  S++ +YG SP+L+ + GS A+DFT HD   G  WNL E L       GKPVVLI+GM+TCPA+QG+
Sbjct:   19 NFHKGNSVRDIYGTSPHLVRDLGSPAVDFTLHDLD-GNRWNLGEVLAA---GEGKPVVLIFGMWTCPAYQGL 86          
BLAST of mRNA_E_fasciculatus_S2_contig7788.15954.1 vs.
Match: Hypothetical (protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K7C6_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 3.750e-14
Identity = 42/104 (40.38%), Postives = 56/104 (53.85%), Query Frame = 1
Query:  133 CFGFPDNNFDRQRSIKGMYGQSPNLLLETG---SGAIDFTAHDYPAGEPWNLREHLEGVGGD-AGKPVVLIWGMFTCPAFQGMGDQPPIPPWDMCGYRDEYKLV 432
            CF FP  +F     +K  YG SP++ +  G   S  +        +G  W      + +G + +GK  VLIWGM+TCPAFQG+G     PP+D C YRDEY LV
Sbjct:   25 CFDFPKRSFSTTNCVKCTYGASPHIPVSVGDNISPQLQALTLSTASGSSW------KSLGTETSGKISVLIWGMWTCPAFQGLGTGGS-PPFDECSYRDEYDLV 121          
BLAST of mRNA_E_fasciculatus_S2_contig7788.15954.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RV85_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.030e-12
Identity = 44/119 (36.97%), Postives = 59/119 (49.58%), Query Frame = 1
Query:   91 AAVNLRPESELTDNCFGFPDNNFDRQRSIKGMY--GQSPNLLLETGSGAIDFTAHDYPAGEPWNLREHLEGVGGDAGKPVVLIWGMFTCPAFQGMGDQPPIPP---WDMCGYRDEYKLV 432
            A   L P S+L+  CFG P+  F  Q +I  +   G++  +    G  A+DFT +D  AG    L   LE       KPV LIWGM+TCPAFQG+    P      W+     ++YK V
Sbjct:   23 ALAELDPASQLSSGCFGLPEKGFGLQSNIAQVDADGEAVWVSRAAGDSAVDFTLYDL-AGNEVTLSTLLED------KPVALIWGMWTCPAFQGLRSDYPFDQNSRWEEWDVVEKYKDV 134          
BLAST of mRNA_E_fasciculatus_S2_contig7788.15954.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G552_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 4.770e-11
Identity = 35/84 (41.67%), Postives = 48/84 (57.14%), Query Frame = 1
Query:  103 LRPESELTDNCFGFPDNNFDRQRSIKGMYGQSPNLLLETGSGAIDFTAHDYPAGEPWNLREHLEGVGGDAGKPVVLIWGMFTCP 354
            L+ E  L  +CFG+P+ +F  + S+  +YGQ P L   TG  A+DFT      GE  NL+  L        KPVV+I+GM+TCP
Sbjct:   35 LQGEHSLLTDCFGWPEASFSPENSVLSLYGQQPYLTRRTGDPAVDFTMKTID-GEVVNLKALLST------KPVVMIFGMYTCP 111          
BLAST of mRNA_E_fasciculatus_S2_contig7788.15954.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C362_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.140e-9
Identity = 35/92 (38.04%), Postives = 46/92 (50.00%), Query Frame = 1
Query:   94 AVNLRPESELTDNCFGFPDNNFDRQRSIKGMYGQSPNLLLETGSGAIDFTAHDYPAGEPWNLREHLEGVGGDAGKPVVLIWGMFTCPAFQGM 369
            A  L+  S L   CF FP ++FD   SI   Y   P  L+  G  AIDF          + LR+ +        KPVV+++GM TCPAFQG+
Sbjct:   49 AERLQNTSNLIGKCFNFPSSDFDYDNSINAYYPNDPTPLVARGGFAIDFALPSLDD-NVYYLRDLIRT------KPVVMVYGMLTCPAFQGL 133          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7788.15954.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
Uncharacterized1.160e-7684.72protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.150e-3559.13protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.660e-3356.52protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.000e-3051.75protein (Fragment) n=1 Tax=Tribonema minus TaxID=3... [more]
Uncharacterized1.730e-2353.33protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.370e-1451.39protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Hypothetical3.750e-1440.38protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 ... [more]
Hypothetical2.030e-1236.97protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
Hypothetical4.770e-1141.67protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
Hypothetical1.140e-938.04protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7788contigE_fasciculatus_S2_contig7788:269..1171 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size432
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_008920.1
Cds size432
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842440.4609406-CDS-E_fasciculatus_S2_contig7788:268..5301696842440.4609406-CDS-E_fasciculatus_S2_contig7788:268..530Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7788 269..530 -
1696842440.4738054-CDS-E_fasciculatus_S2_contig7788:1001..11711696842440.4738054-CDS-E_fasciculatus_S2_contig7788:1001..1171Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7788 1002..1171 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7788.15954.1prot_E_fasciculatus_S2_contig7788.15954.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7788 269..1171 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7788.15954.1

>prot_E_fasciculatus_S2_contig7788.15954.1 ID=prot_E_fasciculatus_S2_contig7788.15954.1|Name=mRNA_E_fasciculatus_S2_contig7788.15954.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=144bp
MAMKTLVLATTAVTAAAAAAAAAAAAADTSAAVNLRPESELTDNCFGFPD
NNFDRQRSIKGMYGQSPNLLLETGSGAIDFTAHDYPAGEPWNLREHLEGV
GGDAGKPVVLIWGMFTCPAFQGMGDQPPIPPWDMCGYRDEYKLV
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mRNA from alignment at E_fasciculatus_S2_contig7788:269..1171-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7788.15954.1 ID=mRNA_E_fasciculatus_S2_contig7788.15954.1|Name=mRNA_E_fasciculatus_S2_contig7788.15954.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=903bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7788:269..1171- (Ectocarpus fasciculatus EfasUO2)
ATGGCCATGAAGACTCTGGTTCTCGCTACGACTGCTGTTACGGCAGCAGC AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGACACATCAGCAGCGGTGA ACTTGAGGCCGGAGTCTGAGCTAACAGACAACTGCTTCGGTTTCCCCGAC AACAACTTCGACAGACAAAGGTGGGCGGGGAGCTGCTGTGAGCGAAGAGC GTCGGTCGGTGACACATGCCATGGGTGCACGTTGAGCGTACATGACATTT TTTTCTTTTCGTCATCACATTATTAAACCAGAACTCACAGCATTTCTTTG GTTTGGATGAGAAAAACCCAATCAGGCTGAATGGGCTACCTGTAGTTCCC AACCTAGAGGTGAGCTTTCGCCGCTAGAAAGAGTTGTACGCAAGGTTGGC GCACTGCATCGCGTTGGGTGAGGCCGAGGCTCTAGAGCCTTGTTGTTTCC TCCTAGGACGAGGTGAGAAAAAGATCGCGGCTTCGCCCTAAAGTACAAAC AGCAAGAGTGAGGTTGGGGGGGTTGTTCATCGAACATTACTGCTGTAGTC GTCGTGCAAACACGCCCCCCTTGCAAGCAAGAGCATCGTTCAAAGCAGGT ACATACCACTACTGCTGCTGCATGCACACAACACGTGCCAGGTCCATAAA GGGCATGTACGGGCAGTCCCCCAACCTTCTCCTCGAGACCGGGAGCGGCG CGATCGACTTCACCGCGCACGACTACCCCGCGGGGGAGCCGTGGAATCTG CGCGAGCACCTGGAGGGGGTCGGCGGCGACGCGGGGAAGCCGGTAGTGCT GATCTGGGGAATGTTCACGTGCCCGGCGTTTCAGGGGATGGGCGACCAGC CCCCGATCCCCCCATGGGACATGTGCGGGTACAGAGACGAGTACAAATTG GTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7788:269..1171-

>mRNA_E_fasciculatus_S2_contig7788.15954.1 ID=mRNA_E_fasciculatus_S2_contig7788.15954.1|Name=mRNA_E_fasciculatus_S2_contig7788.15954.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=432bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7788:269..1171- (Ectocarpus fasciculatus EfasUO2)
ATGGCCATGAAGACTCTGGTTCTCGCTACGACTGCTGTTACGGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGACACATCAGCAGCGGTGA
ACTTGAGGCCGGAGTCTGAGCTAACAGACAACTGCTTCGGTTTCCCCGAC
AACAACTTCGACAGACAAAGGTCCATAAAGGGCATGTACGGGCAGTCCCC
CAACCTTCTCCTCGAGACCGGGAGCGGCGCGATCGACTTCACCGCGCACG
ACTACCCCGCGGGGGAGCCGTGGAATCTGCGCGAGCACCTGGAGGGGGTC
GGCGGCGACGCGGGGAAGCCGGTAGTGCTGATCTGGGGAATGTTCACGTG
CCCGGCGTTTCAGGGGATGGGCGACCAGCCCCCGATCCCCCCATGGGACA
TGTGCGGGTACAGAGACGAGTACAAATTGGTG
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