mRNA_E_fasciculatus_S2_contig7783.15948.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7783.15948.1 vs.
Match: Alanine--tRNA (ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCV6_ECTSI) HSP 1 Score: 153 bits (387), Expect = 2.120e-41 Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 1
Query: 1 AVKAAKQAVEEGKTCVVMDVAIGADSKAVKRVLDGVSKVAPGLSFMGFSAEGPGATGKLLVFSAVAGAAAEGGLKADEWLRASLAACG 264
AVKAAKQAVEEGKT VVMDVAIGADSKAVKRVLDGVSKVAPGLSFMGFSAEGPGATGKLLVFSAVAGAAAEGGLKADEWLR+SLAACG
Sbjct: 999 AVKAAKQAVEEGKTWVVMDVAIGADSKAVKRVLDGVSKVAPGLSFMGFSAEGPGATGKLLVFSAVAGAAAEGGLKADEWLRSSLAACG 1086
BLAST of mRNA_E_fasciculatus_S2_contig7783.15948.1 vs.
Match: Hypothetical (protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K872_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 2.040e-16 Identity = 43/83 (51.81%), Postives = 60/83 (72.29%), Query Frame = 1
Query: 16 KQAVEEGKTCVVMDVAIGADSKAVKRVLDGVSKVAPGLSFMGFSAEGPGATGKLLVFSAVAGAAAEGGLKADEWLRASLAACG 264
++A GKT +V++V IGADSKA ++VL+ K+AP ++FMG S E G+ GKL F+AV A AEGG +ADEW+R++L CG
Sbjct: 93 EEAAGAGKTALVLEVDIGADSKASQKVLNAAKKLAPDMAFMGLSEEENGSGGKLACFAAVPEAMAEGGFRADEWVRSALGVCG 175
BLAST of mRNA_E_fasciculatus_S2_contig7783.15948.1 vs.
Match: Hypothetical (protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NG01_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 1.290e-15 Identity = 43/83 (51.81%), Postives = 60/83 (72.29%), Query Frame = 1
Query: 16 KQAVEEGKTCVVMDVAIGADSKAVKRVLDGVSKVAPGLSFMGFSAEGPGATGKLLVFSAVAGAAAEGGLKADEWLRASLAACG 264
++A GKT +V++V IGADSKA ++VL+ K+AP ++FMG S E G+ GKL F+AV A AEGG +ADEW+R++L CG
Sbjct: 260 EEAAGAGKTALVLEVDIGADSKASQKVLNAAKKLAPDMAFMGLSEEENGSGGKLACFAAVPEAMAEGGFRADEWVRSALGVCG 342
BLAST of mRNA_E_fasciculatus_S2_contig7783.15948.1 vs.
Match: Hypothetical (protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DCJ1_CYCTE) HSP 1 Score: 74.7 bits (182), Expect = 3.710e-15 Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = 1
Query: 22 AVEEGKTCVVMDVAIGADSKAVKRVLDGVSKVAPGLSFMGFSAEGPGATGKLLVFSAVAGAAAEGGLKADEWLRASLAACG 264
AVE GK +V+ V IGADSKA ++V++ V +AP ++F+G + E PG+ GK + F+ V A E G+KADEW+RA+L CG
Sbjct: 21 AVEAGKKVLVLPVDIGADSKASQKVMNSVKSMAPEMAFLGVTEEDPGSGGKAMAFALVPDALVEEGIKADEWVRATLEVCG 101
BLAST of mRNA_E_fasciculatus_S2_contig7783.15948.1 vs.
Match: Alanine--tRNA (ligase n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AXE9_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 8.090e-12 Identity = 37/72 (51.39%), Postives = 52/72 (72.22%), Query Frame = 1
Query: 49 VMDVAIGADSKAVKRVLDGVSKVAPGLSFMGFSAEGPGATGKLLVFSAVAGAAAEGGLKADEWLRASLAACG 264
V++V IGADSKA ++VL+ V K+AP ++FMG S E G+ GKL+ F+ V + + GLKADEW+R +L CG
Sbjct: 888 VLNVDIGADSKASQQVLNAVKKIAPDMAFMGLSEEEQGSGGKLMAFAVVPESLVDCGLKADEWVRGTLEVCG 959
BLAST of mRNA_E_fasciculatus_S2_contig7783.15948.1 vs.
Match: Alanine--tRNA (ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLN6_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 2.060e-11 Identity = 42/77 (54.55%), Postives = 50/77 (64.94%), Query Frame = 1
Query: 34 GKTCVVMDVAIGADSKAVKRVLDGVSKVAPGLSFMGFSAEGPGATGKLLVFSAVAGAAAEGGLKADEWLRASLAACG 264
G +V +VAIG DSKAVKRVLD V AP L+FMG S GA G+LL F+ AA GL AD W+ A++AACG
Sbjct: 867 GARSLVTEVAIGGDSKAVKRVLDAVQAAAPELAFMGLS-PAAGADGRLLCFALCGDAARAAGLGADAWVAAAMAACG 942
BLAST of mRNA_E_fasciculatus_S2_contig7783.15948.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y449_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 2.340e-11 Identity = 33/83 (39.76%), Postives = 56/83 (67.47%), Query Frame = 1
Query: 16 KQAVEEGKTCVVMDVAIGADSKAVKRVLDGVSKVAPGLSFMGFSAEGPGATGKLLVFSAVAGAAAEGGLKADEWLRASLAACG 264
++AV+ G+ + ++V IG D+KA+K+VLD ++K AP L+F+ S++ K+L F+ V + + G+KAD W+RA+L CG
Sbjct: 33 QEAVKAGRQSLAVEVGIGTDNKAIKKVLDTIAKEAPELAFLAVSSDSGEEDSKMLCFATVPASMLDAGVKADAWVRAALEPCG 115
BLAST of mRNA_E_fasciculatus_S2_contig7783.15948.1 vs.
Match: Alanine--tRNA (ligase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SS72_THAOC) HSP 1 Score: 63.5 bits (153), Expect = 8.610e-10 Identity = 37/75 (49.33%), Postives = 53/75 (70.67%), Query Frame = 1
Query: 22 AVEEGKTCVVMDVAIGADSKAVKRVLDGVSKVAPGLSFMGFSAEGPGATGKLLVFSAVA-GAAAEGGLKADEWLR 243
A+ EGK +V+++ IGADSKA ++V+ V K+AP L+FMG S E G+ GK+L F+ V G + GLKA+EWL+
Sbjct: 649 ALAEGKRTLVLNLDIGADSKASQKVIKAVQKIAPDLAFMGISEEEAGSGGKILCFAIVPEGVTDDTGLKANEWLK 723
BLAST of mRNA_E_fasciculatus_S2_contig7783.15948.1 vs.
Match: Alanine--tRNA (ligase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LD66_THAPS) HSP 1 Score: 60.8 bits (146), Expect = 7.720e-9 Identity = 37/84 (44.05%), Postives = 58/84 (69.05%), Query Frame = 1
Query: 16 KQAVEEGKTCVVMDVAIGADSKAVKRVLDGVSKVAPGLSFMGFSAEGPGATGKLLVFSAVAGAAA-EGGLKADEWLRASLAACG 264
++A+ +GK +V+++ IGADSKA ++V+ V K+AP ++FMG S E PG+ GK+L F+ V + E GLKA+EW + L + G
Sbjct: 812 EKALIDGKKSLVLNLDIGADSKASQKVIKAVQKLAPEMAFMGISEEEPGSGGKILCFAIVPDSLMKETGLKANEWTKEVLDSVG 895 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7783.15948.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7783.15948.1 >prot_E_fasciculatus_S2_contig7783.15948.1 ID=prot_E_fasciculatus_S2_contig7783.15948.1|Name=mRNA_E_fasciculatus_S2_contig7783.15948.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=88bp AVKAAKQAVEEGKTCVVMDVAIGADSKAVKRVLDGVSKVAPGLSFMGFSAback to top mRNA from alignment at E_fasciculatus_S2_contig7783:3694..4909- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7783.15948.1 ID=mRNA_E_fasciculatus_S2_contig7783.15948.1|Name=mRNA_E_fasciculatus_S2_contig7783.15948.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1216bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7783:3694..4909- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7783:3694..4909- >mRNA_E_fasciculatus_S2_contig7783.15948.1 ID=mRNA_E_fasciculatus_S2_contig7783.15948.1|Name=mRNA_E_fasciculatus_S2_contig7783.15948.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=264bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7783:3694..4909- (Ectocarpus fasciculatus EfasUO2)back to top |