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Homology
BLAST of mRNA_E_fasciculatus_S2_contig777.15933.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNP2_ECTSI) HSP 1 Score: 551 bits (1421), Expect = 7.950e-195 Identity = 326/397 (82.12%), Postives = 336/397 (84.63%), Query Frame = 1
Query: 1 MPNMSAEAKGIGKSQEQAGDGESYKLGR-DLRNGGNDAKDDLGGSVPWGAESKECQQQGENRGRMLSSLAKQASPRPSEMQAFSSLPSPSTDSGKLAPLDMGQRSPRSHRASRSRHRSSSPKDHQNPSSEVTSLSLPASGTSSPTSPRLPPMKSAPSPSNDESSLPGLSLSPRSGAHSARRVRSLPPTPKRASCTNLDPVSDSVEFARPQSRGGPAGNGSKFSPLLLDAKEGSTSTPQYRDPAPCADDSNKRSGDLAGERGGGGLGREPRRLSRGAAAEAKSEAGCTRLPGTKSTSPPRDRREG-EGRPRLSSESLPGASPSSSSDSRRRQRSSQNVDVAHATKRSSGDVSPTGGEGNENHRYEGRGEEKDFGSVPNSPSTARGEESSKSPRTRRMR 1185
MPNM AEAK +GKSQEQA DGESYKLGR +R GGNDAK DLGGSVPWGA+SKECQQQGENRG+MLSSLAKQASPRPSEMQAFSSLPSPS DSGKLAPLDMGQRSPRSHRASRSR RSSSPK+HQN SSE DES LPGLSLSPRSGAHSARRVRSLPPTPKRASCTNLDPVSDSVEFARPQSRGGPAGNGSKFSPLL DAKEGSTS P+YRDPA CA DSNKR G+LA ERGGGGLGRE R LSRGAA EAKSE GCTRLPGTKSTSPPRDR EG EGRPRLSSESLPGASPSSS+ + RRQRSSQNVD AH+TKRSSGDVSP GGE N NHRYEG GEEKDFGSVPNSPS ARGEESSKSPRTRRMR
Sbjct: 1 MPNMLAEAKSVGKSQEQADDGESYKLGRGSMRGGGNDAKGDLGGSVPWGADSKECQQQGENRGKMLSSLAKQASPRPSEMQAFSSLPSPSADSGKLAPLDMGQRSPRSHRASRSRQRSSSPKEHQNASSE------------------------------DESPLPGLSLSPRSGAHSARRVRSLPPTPKRASCTNLDPVSDSVEFARPQSRGGPAGNGSKFSPLL-DAKEGSTS-PRYRDPALCAADSNKRGGELAAERGGGGLGRESRSLSRGAA-EAKSEVGCTRLPGTKSTSPPRDRGEGSEGRPRLSSESLPGASPSSSNGTWRRQRSSQNVDAAHSTKRSSGDVSPAGGERNGNHRYEGYGEEKDFGSVPNSPSMARGEESSKSPRTRRMR 364
BLAST of mRNA_E_fasciculatus_S2_contig777.15933.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LP62_9PHAE) HSP 1 Score: 360 bits (925), Expect = 2.110e-120 Identity = 238/393 (60.56%), Postives = 249/393 (63.36%), Query Frame = 1
Query: 58 DGESYKL--GRD-LRNGGNDAKDDLGGSVPWGAESKECQQQGENRGRMLSSLAKQASPRPSE---------------------------MQAFSSLPSPSTDSGKLAPLDMGQRSPRSHRASRSRHRSSSPKDHQNPSSEVTSLSLPASGTSSPTSPRLPPMKSAPSPSNDESSLPGLSLSPRSGAHSARRVRSLPPTPKRASCTNLDPVSDSVEFARPQSRGGPAGNGSKFSPLLLDAKEGSTSTPQYRDPAPCADDSNKRSGDLAGERGGGGLGREPRRLSRGAAAEAKSEAGCTRLPGTKSTSPPRDRREGEGRPRLSSESLPGASPSSSSDSRRRQRSSQNVDVAHATKRSSGDVSPTGGEGNENHRYEGRGEEKDFGSVPNSPSTARG 1146
DGESYKL GR LR G NDA DLGGSVPWGA+SKECQQQGENRG++LSSLAKQASPRPSE MQAFSSLP+PS DSGKLAPLDM QR+PRSHRASRSR RSSSPK+HQN SSE DES LPGLSLSPRSGAHSARRVRSLPPTPKRASCTNLDPVSDSVEFA PQ RGGPAGNGSKFSPLL DAKEGSTS P+YRDPA CA DSNKRSG+LA E GGGGL REP+RLSR AAEAKSE GCTRLPGT +P GGE N+NHRYEG GE KDFGSVPNSPST RG
Sbjct: 3 DGESYKLQLGRGYLRAGPNDATGDLGGSVPWGADSKECQQQGENRGKLLSSLAKQASPRPSEEPQPDGKNYRQRCNRESAHHDLSRLNQMQAFSSLPNPSADSGKLAPLDMEQRNPRSHRASRSRQRSSSPKEHQNASSE------------------------------DESPLPGLSLSPRSGAHSARRVRSLPPTPKRASCTNLDPVSDSVEFAWPQGRGGPAGNGSKFSPLL-DAKEGSTS-PRYRDPALCAADSNKRSGELAAECGGGGLEREPQRLSR--AAEAKSEVGCTRLPGT---------------------------------------------------------NPAGGERNDNHRYEGHGERKDFGSVPNSPSTVRG 304
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 1200 |
| Hectar predicted targeting category | other localisation |
| Exons | 8 |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-08_006380.1 |
| Cds size | 1200 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1696842438.5181057-CDS-E_fasciculatus_S2_contig777:5024..5080 | 1696842438.5181057-CDS-E_fasciculatus_S2_contig777:5024..5080 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig777 5025..5080 - |
| 1696842438.535963-CDS-E_fasciculatus_S2_contig777:6121..6232 | 1696842438.535963-CDS-E_fasciculatus_S2_contig777:6121..6232 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig777 6122..6232 - |
| 1696842438.5538461-CDS-E_fasciculatus_S2_contig777:6698..6856 | 1696842438.5538461-CDS-E_fasciculatus_S2_contig777:6698..6856 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig777 6699..6856 - |
| 1696842438.5695677-CDS-E_fasciculatus_S2_contig777:7631..8029 | 1696842438.5695677-CDS-E_fasciculatus_S2_contig777:7631..8029 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig777 7632..8029 - |
| 1696842438.5858948-CDS-E_fasciculatus_S2_contig777:8313..8403 | 1696842438.5858948-CDS-E_fasciculatus_S2_contig777:8313..8403 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig777 8314..8403 - |
| 1696842438.5969863-CDS-E_fasciculatus_S2_contig777:8970..9123 | 1696842438.5969863-CDS-E_fasciculatus_S2_contig777:8970..9123 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig777 8971..9123 - |
| 1696842438.6083953-CDS-E_fasciculatus_S2_contig777:9413..9602 | 1696842438.6083953-CDS-E_fasciculatus_S2_contig777:9413..9602 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig777 9414..9602 - |
| 1696842438.6195061-CDS-E_fasciculatus_S2_contig777:9940..9985 | 1696842438.6195061-CDS-E_fasciculatus_S2_contig777:9940..9985 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig777 9941..9985 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig777.15933.1 >prot_E_fasciculatus_S2_contig777.15933.1 ID=prot_E_fasciculatus_S2_contig777.15933.1|Name=mRNA_E_fasciculatus_S2_contig777.15933.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=400bp
MPNMSAEAKGIGKSQEQAGDGESYKLGRDLRNGGNDAKDDLGGSVPWGAE SKECQQQGENRGRMLSSLAKQASPRPSEMQAFSSLPSPSTDSGKLAPLDM GQRSPRSHRASRSRHRSSSPKDHQNPSSEVTSLSLPASGTSSPTSPRLPP MKSAPSPSNDESSLPGLSLSPRSGAHSARRVRSLPPTPKRASCTNLDPVS DSVEFARPQSRGGPAGNGSKFSPLLLDAKEGSTSTPQYRDPAPCADDSNK RSGDLAGERGGGGLGREPRRLSRGAAAEAKSEAGCTRLPGTKSTSPPRDR REGEGRPRLSSESLPGASPSSSSDSRRRQRSSQNVDVAHATKRSSGDVSP TGGEGNENHRYEGRGEEKDFGSVPNSPSTARGEESSKSPRTRRMRHAPA* back to topmRNA from alignment at E_fasciculatus_S2_contig777:5025..9985- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig777.15933.1 ID=mRNA_E_fasciculatus_S2_contig777.15933.1|Name=mRNA_E_fasciculatus_S2_contig777.15933.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4961bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig777:5025..9985- (Ectocarpus fasciculatus EfasUO2) ATGCCAAACATGTCGGCAGAAGCCAAGGGCATCGGCAAGTCGCAAGTGAG
CAACAGCACACTGCTGCAGTCTAGATAGACATCGCTCTGAGGTAGGTCAG
GGCGTTTCCCGTCAGGATGATGGCGTGCATATTATTTAGATCACCCGCCA
TCATGACGACAACACCGATCACGCGCTCTACATACATACAGGTAGTCGTG
CGGCGGTACACAACAACACGACATTTACGTGTGACGTGTAGCCGCATTCC
GAGCACCATAGCAATATTCTCGAAACAGAGAACGAGCGGCGTTCTGTACG
GAGAGAGAACACTTTGTTCATCCAGCTCATGTATGGGTTGCCTCTTATCG
CTGCCTCCCCTCGAAACGGACACGGACGCACAGGAGCAGGCAGGCGATGG
AGAGAGCTATAAACTAGGGAGAGATTTGAGAAACGGGGGAAACGACGCAA
AGGACGACCTTGGTGGCAGCGTGCCGTGGGGTGCCGAATCTAAAGAATGT
CAGCAGCAAGGGGAAAACCGAGGGAGAATGCTGAGCAGTCTTGCCAAACA
AGCGAGCCCACGGCCCAGCGAGGTAAGGGGACGCCATGTCATGTTGTTTT
TTTGAACGTCAAACGACGGTCGCACTGAGCTAGTCATACAAAATGCATAC
GTTGAAACCTTGAATGCGGTACAAACCTGTATCATCCCAGGTAGAGGACT
AATGCTCACGATGTACCATTGGTACCACACCTTGCAGAAGAACGCAATCG
TCCAAAGACACGGTCCACGGTATGGGTTGTAAAACGAGGGTGTATGGGTG
CAGCAGCCCTAAAAAACGCTATTCATGATCGGTGCATCATGAACTCTCAT
GCTTTGAACCAGATGCAGGCGTTCTCGAGCCTTCCGAGCCCGTCAACAGA
CTCCGGGAAACTTGCGCCGCTGGACATGGGACAAAGAAGTCCCCGCTCAC
ATCGCGCATCGAGGTCTAGACACCGATCGAGCAGTCCCAAAGACCACCAA
AACCCATCCTCGGAGGTGAGGCAGAGGAGGGCGTGTGATGGTGTATTTTC
TATAGCAAGTATCTGCGGGACTACACAAGGGTTGATCCATGCGATACGTA
GTTTCCAATTGTTTGAGTTCAGGACGGGGCTAATACATTCGTTCAACTTG
GCGAGAAACACTCGTGCCGTTAGGCTGCAAAGCGATGATTGGACGTGACG
TGCAGCCGACGAAATCTCGTGTGAGCGTTTCGGGGTCAATACCTACAATC
CGGGTCATTCTTCGCATTCGAACCAATGTTGAGGTGCACCTTTGACACTA
AGTCTACTACCAAGCAATGTTTTTTCTTTAGTCGCCCAGTGTTTGAAAGT
TGCTGGTGACGTGTGTTCAGTTTGGCGGATGATGGTTACATGCTGCCCAT
GAGAGAAGAAACCGGAGGCTTTAAACAAGGACATATAACCCAAACATACT
TTCGCTTGCGATGTTTGTTTCGTCGATCGACACGTTTCGTGTCTCGCGCA
CTCGTGTCCCACCCGCCCCGATTCACGGCGGGGGCGGGGTCAATGCTGCT
GTCCGATGGCCTCCATTAATTTCACGGAGAAGGTGACGAGCTTGTCTCTA
CCAGCCTCAGGCACAAGCAGCCCTACGTCGCCGAGACTCCCTCCAATGAA
GTCGGCGCCATCCCCTTCAAACGTGAGAATCATTGGCGGCCTCGCGCAGA
GACGCGAAATCCATAGTCTTAGCCACACGCGCCATGCAGACAGAGAAGAA
CCACAATCGAAAAAATTCGAACGTTGAACTTACGTGCACGCTAGATATTC
TTGATATACCACCAGCGCAAAGATTGGGCAGCATAATATGCAGGTGCGAA
GTGGTGTTTCTCCGCACAGTACAATACCCTGGAGCTGACGGTTCAATAAA
AGTTACGTTTCACCCGCGGCCGGCCTCCTGCTGCCGCTTCGCTCGGTGTT
TCCCAGGACGAATCGTCTCTCCCCGGTCTGTCGCTCTCTCCGAGAAGTGG
CGCGCACTCTGCTCGTCGAGTCCGAAGCCTCCCCCCGACTCCGAAGAGAG
CGTCGTGCACCAACCTTGACCCTGTCAGCGACAGCGTGGAGTTCGCTCGG
CCTCAGAGTCGCGGCGGGCCGGCCGGCAACGGCAGCAAGTTTTCTCCGCT
CCTCCTGGACGCGAAGGAGGGCTCCACCTCCACGCCGCAGTATAGAGATC
CCGCCCCATGCGCGGACGATAGCAACAAACGTAGCGGGGATCTTGCAGGT
GAACGTGGCGGTGGCGGGTTAGGACGCGAACCGCGACGCCTTTCGAGGGG
AGCGGCGGCGGAAGCGAAAAGCGAGGCCGGGTGCACTCGTCTCCCGGGCA
CAAAGTGAGTTCATTGCTTGAGCATTTCGATGCGAGAAGTGCGTGCGGCG
TGCTCGGCGTTTTTACCATGAGAAATGCACACGCAGCGTCCTCTGACGTC
GTTCAGTTTGAGCTTCAGGATGAAGATTGGTGGCGGTTCCCAGTGGTGTG
CAGCGCGCGTCTTCAATGGGCCCTAATGTTGTCGTCACTTGTCGCATGTG
TGGTTAAAAACGGGAACCCAGCTGCCATATCGTATGATTCATTGAGACCT
GAGAAACAACATAGCTGGCAGGGAAACCGGGGAAATCTCGACTTCTCACG
CACCGCCTCTGCTTTCCCCCTCAAACAGACGACGAAGTACAGCATTTTGT
TGCAGACCGCAAAATAGAACGCTTGCGAACGATCGATACCATGCCGCCCC
CAATGCAGCATACATAGCGGCCAGTCGACACGGTACGATCAAAAGATCAA
GGATGCAGCAGCTCCATCTCAATCGTCCTCAGCCACACCCAATGCGGTCC
AGTTGTACAATCAACCCTTCGAACATCATGACATAAATCTATTGAGAGGT
TTCAGGACACAGATATCGAGATCGGGCAAGAGTGTGGTTCTTTTTCTGAA
CTGCAACGTCTAGTGCTGGGTGTGCCAACGTGCCCCCATCAACGCCTCGG
GAGGTGGCTTCCCAGAGCTTCCCGGTATTTCAGCTGGTATAACATACAAT
TAGCAAGCCTTCACAACGATGACCTGACCATTCCGATCGTTATACGTTCA
TTTTTTTTCAAACATGATTATGATTTCAGGTCCACCTCACCACCGCGAGA
CAGGAGGGAGGGAGAGGGGAGACCCCGTCTATCTAGTGAGAGCCTTCCGG
GCGCTTCCCCCTCGTCTTCCAGTGACTCTCGGCGCAGGCAGCGGAGCTCG
CAGAACGTGGATGTGGCGCATGCCACGAAACGATCGAGTGGGAGAAGCAG
TCACGGTGACGACCACGGTACCTAGCGTAGGAACGGTGCTGGAGGCCTGT
AGACGACTGGAAGAGCACAGTCTGCCTGTCCATCAACTATATTCTAGAGG
GCATCGTCAACGATTCCCGGACTGACGGGCGGTTTCCAATCCTGTACCCT
CGACTACATTTTGTTTGATTGGTGTGCACATGGTTCGCCATGGAATCTCA
AGCAAACTTAAACTTCTCAAAAAATAGTTATGCTGGTATCCAAAGCTTGG
AATTTCACATCCAGCTGTCTGCCGCGTTCGAGGCTGTTTCGCGAACAAGA
TGACTCGAAACTTACACGGAAACGTAGAAAAGAGAATGACGGAACGCTCA
ACGCCCCCTCACCCAGGACACGGACACTGCACGTTGGGATGTCAGTCACC
CTTGCCAGTCCGGCCTATAACTTGTGTGTTTCCCTGATATTGCAATGTTG
AAGGTGGAGACGTTAGTCCCACCGGGGGTGAAGGCAACGAGAACCATCGC
TACGAGGGCCGCGGCGAGGAAAAGGACTTCGGAAGCGTTCCCAACAGCCC
GTCCACCGCCAGAGGTGCCAAAACATATTCCTGAGTTATGCGAGTAGCGG
AAATTTTCAGCTTGCTATTTTTAGTCATCAACGTGTATTGCTGCACATGA
TACCTGCGGCAGGCGCGCGGATTCCTCTCGTATTTTCAAGCTAACAATAC
GGGTTGAACTTCCTTTAGAGAAACGATGCGTTCATGAAACCATTCCTGGT
AAGGCAGTCTGGTATGTCATTGCAGTGCGCTACTGCTCCGGTTGGACAGG
GGTCGTACTCATGTGTAGGGCCTGGAGTGCATTGTGTTACCCCATTCATT
TCATCAAGCCCTACTCATTTCATCAAGCCCTTCGAAAAAGGACACCTAGC
GACCATCAAGGGCAAAGAGCTCCGCTTGGGGCAGCTTGCGAACACCAACC
TCAACAACCGCCTGACTCGTCACGGTAGATGGGGAGGAGCATAAAAGAAT
CTGATGCTGACCCGCCGCAGTCGAAGGGGTTTTCGATGATGCTGGGCATC
TGTAACTGATTTCTCCTCCTCTACTCCGTCTCCAGCGCAAACGAGGTTAT
CTGTCCCGACAGGAGTCATTCTGCCGCGACAGACGTTCCACGACCCCGCT
GGGTGTGGGCATCAACCTTTTCCCCCCGAAGAAATCTTGGAACAATCTAG
CTTCCGTAATACTCCTGCCAGCTGAGCAATCGTGCAGGACTGAGCTGCCA
CGATTGAGAGGCAGAAGCTGTTAGTTGGCTAATCTAAAAGCAGCTGCACC
CGCATGTTTGAAATGTGGGGAAGAAACGGCCAGAGTCTAAGCCCGTCAAG
AATACTTGGTAGGCAGCAAAACTCTCACCCTCGAGGAACACGTTCCCTTC
AGTGTTTCTATACCGCTACTCTAGCGATGAAAGCGATGAAAGCGATGAAA
GCCAGGAAGTGGTGGTGCATAACGTACGAAAGAAAGACAAGCCGATATCG
TTTAACTATCCACTCGTTCACCCTTTATCCATGTTCTTCGCGCTTTTACC
CACGCTGCCTGCCCGCGCACCGATGCTGCCCACTGCTGTGACTCGGCATA
CGCAGGTGAGGAGAGCTCCAAGAGTCCAAGAACACGCCGGATGCGACATG
CCCCAGCGTGA back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig777:5025..9985- >mRNA_E_fasciculatus_S2_contig777.15933.1 ID=mRNA_E_fasciculatus_S2_contig777.15933.1|Name=mRNA_E_fasciculatus_S2_contig777.15933.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1200bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig777:5025..9985- (Ectocarpus fasciculatus EfasUO2) ATGCCAAACATGTCGGCAGAAGCCAAGGGCATCGGCAAGTCGCAAGAGCA GGCAGGCGATGGAGAGAGCTATAAACTAGGGAGAGATTTGAGAAACGGGG GAAACGACGCAAAGGACGACCTTGGTGGCAGCGTGCCGTGGGGTGCCGAA TCTAAAGAATGTCAGCAGCAAGGGGAAAACCGAGGGAGAATGCTGAGCAG TCTTGCCAAACAAGCGAGCCCACGGCCCAGCGAGATGCAGGCGTTCTCGA GCCTTCCGAGCCCGTCAACAGACTCCGGGAAACTTGCGCCGCTGGACATG GGACAAAGAAGTCCCCGCTCACATCGCGCATCGAGGTCTAGACACCGATC GAGCAGTCCCAAAGACCACCAAAACCCATCCTCGGAGGTGACGAGCTTGT CTCTACCAGCCTCAGGCACAAGCAGCCCTACGTCGCCGAGACTCCCTCCA ATGAAGTCGGCGCCATCCCCTTCAAACGACGAATCGTCTCTCCCCGGTCT GTCGCTCTCTCCGAGAAGTGGCGCGCACTCTGCTCGTCGAGTCCGAAGCC TCCCCCCGACTCCGAAGAGAGCGTCGTGCACCAACCTTGACCCTGTCAGC GACAGCGTGGAGTTCGCTCGGCCTCAGAGTCGCGGCGGGCCGGCCGGCAA CGGCAGCAAGTTTTCTCCGCTCCTCCTGGACGCGAAGGAGGGCTCCACCT CCACGCCGCAGTATAGAGATCCCGCCCCATGCGCGGACGATAGCAACAAA CGTAGCGGGGATCTTGCAGGTGAACGTGGCGGTGGCGGGTTAGGACGCGA ACCGCGACGCCTTTCGAGGGGAGCGGCGGCGGAAGCGAAAAGCGAGGCCG GGTGCACTCGTCTCCCGGGCACAAAGTCCACCTCACCACCGCGAGACAGG AGGGAGGGAGAGGGGAGACCCCGTCTATCTAGTGAGAGCCTTCCGGGCGC TTCCCCCTCGTCTTCCAGTGACTCTCGGCGCAGGCAGCGGAGCTCGCAGA ACGTGGATGTGGCGCATGCCACGAAACGATCGAGTGGAGACGTTAGTCCC ACCGGGGGTGAAGGCAACGAGAACCATCGCTACGAGGGCCGCGGCGAGGA AAAGGACTTCGGAAGCGTTCCCAACAGCCCGTCCACCGCCAGAGGTGAGG AGAGCTCCAAGAGTCCAAGAACACGCCGGATGCGACATGCCCCAGCGTGA back to top
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