mRNA_E_fasciculatus_S2_contig775.15916.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig775.15916.1
Unique NamemRNA_E_fasciculatus_S2_contig775.15916.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig775.15916.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS72_9PHAE)

HSP 1 Score: 408 bits (1048), Expect = 3.400e-138
Identity = 221/338 (65.38%), Postives = 245/338 (72.49%), Query Frame = 1 
Query:    1 MPATSVTISGASRTRAFSATWPPYTPASIGVED-------DRQSGPYCQVEIRTLPVRTSGAALSRSSEAASDQGEGGDLVFLERELLLRSYNSVSLSDDGTFSLTLSDCHGFMPISTSSPARQISSASRPSHSHDEGAAGRHESPTAEIVRLLFLPLPLSVEFEVNSGQATSSGAIIGNFHLLPIAHTPQLQHPPAFNAETTTTSPGTSTVGRADYTPGFPVLHEPSCTQFTSATATADSLCDRGEMVCTGEGPGVGGRTAPSSLGGCFVAGAAVGVVLCLLLALVIGRRGWAKDVLEHMWTLLKGEGGDAGMRKAGWRSFIFSVGGAKKVSSCQFC 993
            MPATSV   GASR   F+ATWPPYTPAS   ED       DR+SGPYCQV IRTL  RTSGAA   SSEA +  GEGGDL+F++  LLLRSYNSVSLSDDG +SLTLSDCHGF+PI+TSSP R  SS    S +HD GAAGR E   AEI RLLFLPLP S++FEVN  QATSSGAIIGNFHLLP+AH PQLQH P FN ET+TTSPG  TVG ADYTPG PVL E S   F+SA A AD+LCDR +M CTGEGPGVG  TAPSS+GG F           LLL LV+ R GW KD LE+ WTLLKG+G DAGM+K+GW  FI S+GG KK      C
Sbjct:   31 MPATSVATGGASR--VFTATWPPYTPASTRGEDHQQADRDDRESGPYCQVAIRTLRARTSGAAFISSSEATTGHGEGGDLLFVQPGLLLRSYNSVSLSDDGAYSLTLSDCHGFIPIATSSPDRPASSPPWRSRNHDGGAAGRPEWQMAEIGRLLFLPLPSSIDFEVNRRQATSSGAIIGNFHLLPVAHVPQLQHAPVFNTETSTTSPGIRTVGHADYTPGVPVLQESSRAYFSSAMAAADTLCDREKMACTGEGPGVGEGTAPSSIGGGFTXXXXXXXXXSLLLVLVVFRGGWGKDFLENFWTLLKGDG-DAGMKKSGWGGFIVSIGGEKKEDGVPHC 365
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BLAST of mRNA_E_fasciculatus_S2_contig775.15916.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIC8_ECTSI)

HSP 1 Score: 404 bits (1038), Expect = 1.020e-137
Identity = 213/293 (72.70%), Postives = 235/293 (80.20%), Query Frame = 1 
Query:   97 DDRQSGPYCQVEIRTLPVRTSGAALSRSSEAASDQGEGGDLVFLERELLLRSYNSVSLSDDGTFSLTLSDCHGFMPISTSSPARQISSASRPSHSHDEGAAGRHESPTAEIVRLLFLPLPLSVEFEVNSGQATSSGAIIGNFHLLPIAHTPQLQHPPAFNAETTTTSPGTSTVGRADYTPGFPVLHEPSCTQFTSATATA-DSLCDRGEMVCTGEGPGVGGRTAPSSLGGCFVAGAAVGVVLCLLLALVIGRRGWAKDVLEHMWTLLKGEGGDAGMRKAGWRSFIFSVGGAKK 972
            DDRQ GPYCQV IRTL  RTSGAA   SSEA +DQGEGGDL+F+ERELL+RSYNSVSLSDDGT+SLTLSDC+GFMPI+TSSPAR++SSAS  S +HD   AGR E  TAEIVR+LFLPLP S+EF VNSGQATSSG +IGNFHLLP+AH PQLQH P FNAETTTTSP   TVG A YTPG PVLHEPS   F+S TA A DSLC+RGEM C GEGPGV   TA SS+GG F  G AVGVV  LLL L+I R G  KD +E+ WTLLKG+G DAGMRK+GWR FI SVGG KK
Sbjct:   12 DDRQRGPYCQVAIRTLRARTSGAAFISSSEATTDQGEGGDLLFVERELLVRSYNSVSLSDDGTYSLTLSDCYGFMPITTSSPARRVSSASWRSRNHDGADAGRRERQTAEIVRILFLPLPSSMEFVVNSGQATSSGTVIGNFHLLPVAHVPQLQHAPVFNAETTTTSPDIRTVGHAAYTPGVPVLHEPSRAYFSSTTAAAADSLCERGEMGCIGEGPGVDEGTALSSVGGGFAGGVAVGVVFSLLLVLIIFRGGRGKDFMENFWTLLKGDG-DAGMRKSGWRGFIVSVGGEKK 303
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig775.15916.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.400e-13865.38protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.020e-13772.70protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig775contigE_fasciculatus_S2_contig775:14488..17120 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1088
Hectar predicted targeting categoryother localisation
Exons4
Cds size1011
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842436.8150694-UTR-E_fasciculatus_S2_contig775:14487..145641696842436.8150694-UTR-E_fasciculatus_S2_contig775:14487..14564Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig775 14488..14564 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842436.8268135-CDS-E_fasciculatus_S2_contig775:14564..150861696842436.8268135-CDS-E_fasciculatus_S2_contig775:14564..15086Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig775 14565..15086 -
1696842436.8379805-CDS-E_fasciculatus_S2_contig775:15481..157861696842436.8379805-CDS-E_fasciculatus_S2_contig775:15481..15786Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig775 15482..15786 -
1696842436.8497603-CDS-E_fasciculatus_S2_contig775:16575..166331696842436.8497603-CDS-E_fasciculatus_S2_contig775:16575..16633Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig775 16576..16633 -
1696842436.860819-CDS-E_fasciculatus_S2_contig775:16994..171201696842436.860819-CDS-E_fasciculatus_S2_contig775:16994..17120Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig775 16995..17120 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig775.15916.1prot_E_fasciculatus_S2_contig775.15916.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig775 14565..17120 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig775.15916.1

>prot_E_fasciculatus_S2_contig775.15916.1 ID=prot_E_fasciculatus_S2_contig775.15916.1|Name=mRNA_E_fasciculatus_S2_contig775.15916.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=337bp
MPATSVTISGASRTRAFSATWPPYTPASIGVEDDRQSGPYCQVEIRTLPV
RTSGAALSRSSEAASDQGEGGDLVFLERELLLRSYNSVSLSDDGTFSLTL
SDCHGFMPISTSSPARQISSASRPSHSHDEGAAGRHESPTAEIVRLLFLP
LPLSVEFEVNSGQATSSGAIIGNFHLLPIAHTPQLQHPPAFNAETTTTSP
GTSTVGRADYTPGFPVLHEPSCTQFTSATATADSLCDRGEMVCTGEGPGV
GGRTAPSSLGGCFVAGAAVGVVLCLLLALVIGRRGWAKDVLEHMWTLLKG
EGGDAGMRKAGWRSFIFSVGGAKKVSSCQFCTCLRK*
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mRNA from alignment at E_fasciculatus_S2_contig775:14488..17120-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig775.15916.1 ID=mRNA_E_fasciculatus_S2_contig775.15916.1|Name=mRNA_E_fasciculatus_S2_contig775.15916.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2633bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig775:14488..17120- (Ectocarpus fasciculatus EfasUO2)
ATGCCCGCAACATCCGTTACGATCAGCGGTGCATCCAGAACAAGAGCGTT
TTCCGCGACCTGGCCACCTTACACTCCAGCATCTATTGGTGTAGAGGATG
ACCGGCAGAGCGGTCCCTACTGTCAGGTGCGACTCCTGCAGGAAGCTTTC
CACCTGAACCTTTGAGTTTAGAACACGCATGAATCTGAAACTAACGCAGC
AGCACACCATAGACTGCTCTAGAAGTTCCACATAGGCTGTACGTTATGGG
ACCGACGGCAACAGTGGGAGTGGCTATCCATTGTACTGGTTCACATACCC
TGTATCGGGAAAAATGGCCAACTACCATTCCGGAGTGAGACTGTGATCGG
TGTCAGCCGGCCCACGAGGCTCAAACCTTTATCACCCCGTCAGGCCGGCC
TACGGGGCCCCTGACTTCCTCGCCTCCGTCGTTTACTGTCACAGCCGGTT
CAATCTCTCTCGTCGCTGTGCACTGTTTTACTCTCAGGTCGAAATCCGGA
CCCTCCCTGTACGCACGAGCGGCGCCGCGCTCAGTAGAAGCTCAGGTGAC
ACGACGGACGGAGTGAACGCACAAAGTGTTGATATTCACATTCCCTCAGT
AGCACGAAAATGAGAGCATGAATTACTGAGCGACGGTGTAACACTGTGAT
TTTTTCCATGCATTCTGGGCCAACCACATGTTGAAAATATGGGCTTCATT
CCAACTTTAACCCTTCGTCTCCGTGTTGAACTTGCATAGGGCGACGAGCC
CCATAAAGAAGTGAACACTCATTAAAGGCATCGAATAGAGTTTTTATGGG
CTTCATTCCTACTGTAATCCTTCGTCTCCGTGTTGAACTTACACAGGGCG
ACGAGTCCCATAAAGAAGTGAACACCCATTAAAGGCATCGAGTAGAAATT
TTTCATATACGCATAGGATCAACTTCCGAACAGCGTGTTCAGTCGGTTCT
CATTCCGTAAATTCACTCGAGATAGTTCGTGACTCCCTCGGGGATTTTAA
CTCACACCAACCATCCACATGGGTAGACAATGTAGCTTTGAAACAAGTTC
CGAAGGGCGGGAATATTACCTTAGTTGGGGTGGTGCCTGACTGTATCTTG
CCCGGAACGTTAGCTAATTGATCAAGCCTGTGCTTCACGAGTACGGTGTT
CACTGTTGCGCACGGATGGACCGGGATTCAAATACAGTAGTAGACCGACA
AATGAAGAGCAAGGTGATTGGAACAGGTGCATAAATTTTGTACATCCCTC
CTTCGTCGGCAGCATGCACTATTATTGAGTGCTACTATTGCACGCCGACA
TCCTCCCCGTCACGTGCTGGTTGACGGTTTGCAGAGGCCGCCAGCGACCA
AGGTGAAGGCGGCGACCTTGTTTTTCTCGAGCGCGAGCTCCTCCTGCGGA
GCTACAACAGCGTCTCGCTTTCGGACGACGGCACCTTCAGCTTGACGCTC
TCCGACTGCCACGGATTCATGCCGATATCGACGTCTTCTCCTGCCAGACA
AATATCGAGTGCTTCTCGGCCCTCACACAGTCATGACGAGGGAGCTGCTG
GGAGACATGAAAGCCCAACGGCGGAGATTGTTCGTCTGTTGTTCCTTCCC
CTGCCTTTGTCGGTGGAGTTCGAGGTGAACAGTGGCCAAGTGAGTATCGG
GTGGGAGCACCTCCGATTCACTCTCCGGGAATGAATTCACTCGATACAGA
AAGCGCCGTTCACAAAAAAGGATGATTCAGCTGATACTGGTCACACTCTG
CCTCAGATTTCGCCATCGTTTACATAGCCAACGATGGTGGAATGAATACA
TGCAATGAGTTGCGATCGATTGATCATGTCTAGACCCAGACCCGCACGGA
AGAAAAGGCCACCCTTGCTGGCTGGGATGCGTCCCCCAGGTTTACCAGCC
ACTCCGCCGGTCGTAGTACATTTTCTCTCATTTTGATGCCTTCACCTCAA
TTTCCCTCTTCCTCTCCTCCCTGCTACAATTGCCTCACGTGCGCTCCGTG
CCGTGGCATTCGCGGACACTCGCAAAAAACGAAGGCAACAAGCAGTGGCG
CCATCATCGGCAACTTTCACCTTCTCCCCATCGCCCACACGCCTCAGCTG
CAGCACCCGCCCGCCTTCAACGCAGAGACCACCACCACGTCTCCCGGTAC
CAGCACCGTTGGTCGCGCCGACTACACGCCGGGGTTCCCCGTTCTTCATG
AACCATCCTGTACTCAGTTCACTTCTGCAACGGCGACCGCGGATTCACTC
TGTGACAGGGGCGAAATGGTCTGTACCGGGGAGGGGCCAGGTGTCGGCGG
ACGTACTGCGCCGTCTTCACTTGGAGGCTGCTTCGTGGCGGGAGCAGCGG
TAGGGGTCGTATTATGTCTGCTGCTAGCCCTCGTGATCGGCAGAAGAGGA
TGGGCCAAGGACGTCTTGGAGCACATGTGGACTTTACTCAAGGGCGAGGG
TGGCGATGCAGGGATGAGAAAAGCCGGTTGGAGGAGTTTCATTTTCAGCG
TCGGGGGGGCAAAGAAGGTGTCGTCATGCCAATTTTGCACCTGTCTCCGT
AAATGAAAACTGAAATCCCGCCGCCACCTCCTCCTCTAAATCCATGTAAC
CTATCCGTATCGACGCACCCTGTGAGCTTCAGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig775:14488..17120-

>mRNA_E_fasciculatus_S2_contig775.15916.1 ID=mRNA_E_fasciculatus_S2_contig775.15916.1|Name=mRNA_E_fasciculatus_S2_contig775.15916.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1011bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig775:14488..17120- (Ectocarpus fasciculatus EfasUO2)
ATGCCCGCAACATCCGTTACGATCAGCGGTGCATCCAGAACAAGAGCGTT
TTCCGCGACCTGGCCACCTTACACTCCAGCATCTATTGGTGTAGAGGATG
ACCGGCAGAGCGGTCCCTACTGTCAGGTCGAAATCCGGACCCTCCCTGTA
CGCACGAGCGGCGCCGCGCTCAGTAGAAGCTCAGAGGCCGCCAGCGACCA
AGGTGAAGGCGGCGACCTTGTTTTTCTCGAGCGCGAGCTCCTCCTGCGGA
GCTACAACAGCGTCTCGCTTTCGGACGACGGCACCTTCAGCTTGACGCTC
TCCGACTGCCACGGATTCATGCCGATATCGACGTCTTCTCCTGCCAGACA
AATATCGAGTGCTTCTCGGCCCTCACACAGTCATGACGAGGGAGCTGCTG
GGAGACATGAAAGCCCAACGGCGGAGATTGTTCGTCTGTTGTTCCTTCCC
CTGCCTTTGTCGGTGGAGTTCGAGGTGAACAGTGGCCAAGCAACAAGCAG
TGGCGCCATCATCGGCAACTTTCACCTTCTCCCCATCGCCCACACGCCTC
AGCTGCAGCACCCGCCCGCCTTCAACGCAGAGACCACCACCACGTCTCCC
GGTACCAGCACCGTTGGTCGCGCCGACTACACGCCGGGGTTCCCCGTTCT
TCATGAACCATCCTGTACTCAGTTCACTTCTGCAACGGCGACCGCGGATT
CACTCTGTGACAGGGGCGAAATGGTCTGTACCGGGGAGGGGCCAGGTGTC
GGCGGACGTACTGCGCCGTCTTCACTTGGAGGCTGCTTCGTGGCGGGAGC
AGCGGTAGGGGTCGTATTATGTCTGCTGCTAGCCCTCGTGATCGGCAGAA
GAGGATGGGCCAAGGACGTCTTGGAGCACATGTGGACTTTACTCAAGGGC
GAGGGTGGCGATGCAGGGATGAGAAAAGCCGGTTGGAGGAGTTTCATTTT
CAGCGTCGGGGGGGCAAAGAAGGTGTCGTCATGCCAATTTTGCACCTGTC
TCCGTAAATGA
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