mRNA_E_fasciculatus_S2_contig775.15914.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig775.15914.1
Unique NamemRNA_E_fasciculatus_S2_contig775.15914.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig775.15914.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Q1_9PHAE)

HSP 1 Score: 516 bits (1329), Expect = 2.290e-179
Identity = 320/438 (73.06%), Postives = 356/438 (81.28%), Query Frame = 1
Query:    1 MASWSDLCSIVALCAAVGCFRLLLILRRHVSLLAGAAASNVLDNNESKRGRERARDLRVAETRSTPRGAHQTRNRVDPQGFVFSGRFERVWLAFDSLLDRAAVVENDASLDSDANLLKRTFSAAVEDAVAAGIAAAEQKMVLAFQVKMAQVLVKEMGEWRVMQEGREAWWQRKFDREENKLGTALAAAVASHEDAMAARDRKCAATVASVRDEVLQLKEQAAVNAAGKAADDA-AREKAALANILRSINATHQRQQEELVGLQQEMREGLAR-KVEEAYSASRHGDRPSAAADASXXXXXSMDDTTKLRNVKSDLDSLGARLLVLE----GIASPRRQKRILYRVHERVLESFRVWGEEPFVGPQYSNWVLRKA---SGKTGPGAGDEEDENTTLRKKGKGESGKEGSTTEXXXXXXXXSNGCMSGGGEGGQGRAPSA 1287
            MA+WS +CS+VALCAAVGCFRLLLIL RHVSLLAGAA SN LDNNE K GR+R R   + ETR    GAHQ+R+RVDPQG VFS RFE+VW+AFD LLDR AVVE+DA+LD+DANL K   SA++EDAVAAGIAAAEQKM LAFQ KMAQ ++ E G+WRVMQE REAWWQRKFD EENKLGTALAAAVASHEDAM AR+RKC ATV SVR +VLQLKEQAA NAA KAADDA AREKAA+A++LR+INATHQ QQE +V +QQE+RE LAR KVEEA SASR GD  SAAA+AS     SMDDTTKLRNVKSDLDSLGARLL LE    G+ SPR+  R L++VHE VLES RVWGEEP VGP Y+ WVLRK    S K GPG+GDE DE TT R+K +G SGK GSTT XXXXXXXX   CM GGGEGGQGRAPS+
Sbjct:    1 MATWSIICSLVALCAAVGCFRLLLILSRHVSLLAGAA-SNALDNNERKSGRKRMRG-HLPETRRRSTGAHQSRSRVDPQGSVFSSRFEKVWVAFDRLLDRVAVVEHDANLDNDANLSKGKLSASMEDAVAAGIAAAEQKMALAFQAKMAQAVMNETGKWRVMQESREAWWQRKFDLEENKLGTALAAAVASHEDAMEARERKCTATVDSVRADVLQLKEQAAGNAARKAADDASAREKAAMADLLRAINATHQMQQEAVVAVQQEVRECLARRKVEEASSASR-GDPLSAAAEASPRPP-SMDDTTKLRNVKSDLDSLGARLLALENAGNGLVSPRKLNRTLHKVHESVLESIRVWGEEPLVGPVYTEWVLRKLKKNSSKIGPGSGDEGDEKTTPREKSEGGSGKGGSTTXXXXXXXXXXXDCMPGGGEGGQGRAPSS 434          
BLAST of mRNA_E_fasciculatus_S2_contig775.15914.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FID0_ECTSI)

HSP 1 Score: 410 bits (1053), Expect = 5.110e-136
Identity = 245/327 (74.92%), Postives = 269/327 (82.26%), Query Frame = 1
Query:    1 MASWSDLCSIVALCAAVGCFRLLLILRRHVSLLAGAAASNVLDNNESKRGRERARDLRVAETRSTPRGAHQTRNRVDPQGFVFSGRFERVWLAFDSLLDRAAVVENDASLDSDANLLKRTFSAAVEDAVAAGIAAAEQKMVLAFQVKMAQVLVKEMGEWRVMQEGREAWWQRKFDREENKLGTALAAAVASHEDAMAARDRKCAATVASVRDEVLQLKEQAAVNAAGKAADDAARE-KAALANILRSINATHQRQQEELVGLQQEMREGLAR-KVEEAYSASRHGDRPSAAADASXXXXXSMDDTTKLRNVKSDLDSLGARLLVLEG 975
            M  WS +CS+VALCAAVGCFRLLLIL RHVSLL GAA S VLDNNESKRGR+R RDL +  TR    GAHQTR+RVDPQG VFSG+FE++WLAFD+LL R AVVENDA++++DANLLK   SAA+EDAVA GIAAAEQKM LAFQ KMAQ +V EMG+ RVMQEGREAWWQRKFD EENKLGTALAAAVASHEDAMAAR RK AAT  SVRD+VLQLKEQAA NAAGK         KAA AN+LRSI+ATHQRQQE ++ LQQE+RE LAR KVEE  SASR GDRPS AA+AS     SM+DTTKLRNVKSDLDSLGARLL LE 
Sbjct:    1 MTPWSGICSMVALCAAVGCFRLLLILSRHVSLLVGAA-SKVLDNNESKRGRKRMRDLSLTGTRPRSAGAHQTRSRVDPQGSVFSGKFEKIWLAFDNLLHRVAVVENDANVENDANLLKGNLSAAIEDAVAGGIAAAEQKMALAFQAKMAQAVVNEMGKRRVMQEGREAWWQRKFDLEENKLGTALAAAVASHEDAMAARQRKYAATFNSVRDDVLQLKEQAADNAAGKXXXXXXXXXKAATANLLRSISATHQRQQEAVMALQQEVRECLARRKVEEVSSASR-GDRPSVAAEASPRPP-SMEDTTKLRNVKSDLDSLGARLLALEN 324          
BLAST of mRNA_E_fasciculatus_S2_contig775.15914.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRQ2_9PHAE)

HSP 1 Score: 251 bits (642), Expect = 1.000e-75
Identity = 186/381 (48.82%), Postives = 237/381 (62.20%), Query Frame = 1
Query:    1 MASWSDLCSIVALCAAVGCFRLLLILRRHVSLLAGAAASNVLD---NNESKRGRERARDLRVAETRSTPR---GAHQTR--NRVDPQGFVFSGRFERVWLAFDSLLDRA-AVVENDASLDSDANLLKRTFSAAVEDAVAAGIAAAEQKMVLAFQVKMAQVLVKEMGEWRVMQEGREAWWQRKFDREENKLGTALAAAVASHEDAMAARDRKCAATVASVRDEVLQLKEQAAVNA-AGKAADDAA-REKAALANILRSINATHQRQQEELVGLQQEMREGLARKVEEAYSASRHGDRPSAAADASXXXXXSMDDTTKLRNVKSDLDSLGARLLVLEGIASPRRQKR-ILYRVHERVLESFRVWGEEPFVGPQYSNWVLRKAS 1107
            MASWS +CS+VA CAA+GCF LL  L R + LLA A     +D   + ESKR   R  D  V  T  +PR   GAH TR  NR + QG     RFE+V LAFD L D   A VEND     D +      +AA++D VAAGIAA+E KM LAFQ ++ Q L ++MG  + M+  REAWW+RK D  E++LG ALAAAVAS E  MA R+ KCAATVA+V D+VL+LKEQA  N  AG+A D AA +EKAA+A + RSI    ++  E +  +Q+EM+E  A   E   +A+  GD     A A+     S+D T KL NVKSD+D LG+RLL++E  A    +   I YRVHE V+ES RVWG EP V P Y++W+ + AS
Sbjct:    1 MASWSGICSVVAPCAALGCFWLLFTLSRRLILLAEAVLDGGVDRLFDKESKRRCGRDHDPGVDGT--SPRSVGGAHPTRPGNRANSQGADGDRRFEKVRLAFDGLFDGGGAGVEND-----DVDRFMGLLTAAIDDVVAAGIAASEAKMGLAFQSQITQALEEKMGTAQAMERHREAWWKRKLDGMESRLGRALAAAVASQEGTMAIREEKCAATVAAVCDDVLRLKEQATDNTVAGEATDGAAAKEKAAVAELTRSIAEKQEKMNERVAKVQREMQECFA---EGRPAAAPCGD----GAGAAMVSPSSVDHTAKLNNVKSDIDYLGSRLLIVENAAYEADEMHGIFYRVHESVVESTRVWGTEPLVAPLYTDWLDKLAS 367          
BLAST of mRNA_E_fasciculatus_S2_contig775.15914.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP4_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 3.850e-20
Identity = 83/175 (47.43%), Postives = 110/175 (62.86%), Query Frame = 1
Query:  517 KFDREENKLGTALAAAVASHEDAMAARDRKCAATVASVRDEVLQLKEQAAVNA-AGKAADDAA-REKAALANILRSINATHQRQQEELVGLQQEMREGLARKVEEAYSASRHGDRPSAAADASXXXXXSMDDTTKLRNVKSDLDSLGARLLVLEGIA-SPRRQKRILYRVHERVL 1032
            K D  E++LG ALAAAV   + AMA R+ KCAATVA+ R++VL+LKEQA  NA AG+  D AA +EKAA+A + RSI    ++  E +  +Q+EM+E  A   E   +A+  GD     A A+     S+  T KL NVKSD+D LG+RLL++E  A       RILYRVHE V+
Sbjct:  917 KLDGMESRLGRALAAAV---QGAMAVREGKCAATVAAAREDVLRLKEQATYNAVAGEETDGAAAKEKAAVAGLTRSIAEKQEKMNERVARVQREMQECFA---EGRPAAAPCGD----GAGAAMVSPSSVAHTAKLNNVKSDIDYLGSRLLIVENAAYEAEEMHRILYRVHESVV 1081          
BLAST of mRNA_E_fasciculatus_S2_contig775.15914.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6J5_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 3.960e-20
Identity = 83/175 (47.43%), Postives = 110/175 (62.86%), Query Frame = 1
Query:  517 KFDREENKLGTALAAAVASHEDAMAARDRKCAATVASVRDEVLQLKEQAAVNA-AGKAADDAA-REKAALANILRSINATHQRQQEELVGLQQEMREGLARKVEEAYSASRHGDRPSAAADASXXXXXSMDDTTKLRNVKSDLDSLGARLLVLEGIA-SPRRQKRILYRVHERVL 1032
            K D  E++LG ALAAAV   + AMA R+ KCAATVA+ R++VL+LKEQA  NA AG+  D AA +EKAA+A + RSI    ++  E +  +Q+EM+E  A   E   +A+  GD     A A+     S+  T KL NVKSD+D LG+RLL++E  A       RILYRVHE V+
Sbjct: 1544 KLDGMESRLGRALAAAV---QGAMAVREGKCAATVAAAREDVLRLKEQATYNAVAGEETDGAAAKEKAAVAGLTRSIAEKQEKMNERVARVQREMQECFA---EGRPAAAPCGD----GAGAAMVSPSSVAHTAKLNNVKSDIDYLGSRLLIVENAAYEAEEMHRILYRVHESVV 1708          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig775.15914.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Uncharacterized2.290e-17973.06protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.110e-13674.92protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.000e-7548.82protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.850e-2047.43protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.960e-2047.43protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig775contigE_fasciculatus_S2_contig775:2295..3584 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1290
Hectar predicted targeting categorysignal peptide
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_001440.1
Cds size1290
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842436.655052-CDS-E_fasciculatus_S2_contig775:2294..35841696842436.655052-CDS-E_fasciculatus_S2_contig775:2294..3584Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig775 2295..3584 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig775.15914.1prot_E_fasciculatus_S2_contig775.15914.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig775 2295..3584 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig775.15914.1

>prot_E_fasciculatus_S2_contig775.15914.1 ID=prot_E_fasciculatus_S2_contig775.15914.1|Name=mRNA_E_fasciculatus_S2_contig775.15914.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=430bp
MASWSDLCSIVALCAAVGCFRLLLILRRHVSLLAGAAASNVLDNNESKRG
RERARDLRVAETRSTPRGAHQTRNRVDPQGFVFSGRFERVWLAFDSLLDR
AAVVENDASLDSDANLLKRTFSAAVEDAVAAGIAAAEQKMVLAFQVKMAQ
VLVKEMGEWRVMQEGREAWWQRKFDREENKLGTALAAAVASHEDAMAARD
RKCAATVASVRDEVLQLKEQAAVNAAGKAADDAAREKAALANILRSINAT
HQRQQEELVGLQQEMREGLARKVEEAYSASRHGDRPSAAADASPPPPPSM
DDTTKLRNVKSDLDSLGARLLVLEGIASPRRQKRILYRVHERVLESFRVW
GEEPFVGPQYSNWVLRKASGKTGPGAGDEEDENTTLRKKGKGESGKEGST
TEEGEEDDSASNGCMSGGGEGGQGRAPSA*
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mRNA from alignment at E_fasciculatus_S2_contig775:2295..3584-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig775.15914.1 ID=mRNA_E_fasciculatus_S2_contig775.15914.1|Name=mRNA_E_fasciculatus_S2_contig775.15914.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1290bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig775:2295..3584- (Ectocarpus fasciculatus EfasUO2)
ATGGCGAGCTGGTCCGACTTGTGCTCGATTGTGGCGTTGTGTGCCGCGGT TGGCTGCTTCCGACTGTTGCTCATCCTCCGCCGGCACGTGTCACTGCTTG CTGGGGCTGCTGCATCCAATGTGCTCGACAACAACGAAAGCAAGAGAGGG CGTGAGCGCGCCCGTGATCTTAGGGTTGCCGAAACCAGGTCAACGCCCAG GGGGGCTCACCAGACGAGGAACCGAGTCGACCCCCAGGGCTTTGTTTTCA GCGGCAGGTTTGAGAGGGTGTGGCTGGCTTTCGACAGTCTTCTCGACCGC GCGGCGGTAGTGGAGAATGACGCGAGCCTCGACAGCGATGCGAACCTCTT GAAGAGAACGTTTTCCGCCGCGGTCGAGGATGCCGTCGCCGCCGGCATCG CGGCCGCAGAGCAGAAGATGGTGCTGGCCTTCCAGGTCAAGATGGCGCAG GTCCTCGTGAAGGAGATGGGGGAGTGGCGCGTGATGCAGGAGGGCCGGGA GGCGTGGTGGCAGAGGAAGTTCGACCGCGAAGAGAACAAGCTTGGCACTG CGCTCGCCGCCGCGGTCGCTTCGCACGAGGACGCCATGGCCGCGCGCGAC AGGAAATGCGCAGCAACCGTCGCCTCCGTCCGTGACGAGGTCCTCCAGCT GAAGGAGCAAGCTGCCGTCAATGCTGCGGGGAAGGCGGCCGACGATGCTG CAAGGGAGAAGGCGGCATTGGCCAATATCCTCCGCTCCATTAACGCGACA CACCAGAGACAGCAGGAGGAGTTGGTGGGGTTGCAGCAGGAGATGCGTGA GGGCTTGGCGCGGAAGGTGGAGGAAGCATATTCGGCGTCCCGCCACGGCG ACCGGCCGAGTGCTGCCGCGGACGCGTCGCCACCGCCGCCGCCGTCGATG GACGACACAACCAAGCTCCGCAACGTCAAGAGCGACCTCGACTCTCTCGG AGCCCGCCTCCTTGTCCTCGAGGGCATAGCGAGCCCGAGAAGGCAAAAGA GAATCCTTTACCGGGTCCACGAGCGCGTCTTGGAGTCATTCAGGGTCTGG GGGGAGGAGCCGTTCGTCGGACCCCAGTATTCGAACTGGGTGCTCAGGAA GGCTAGTGGAAAGACAGGGCCCGGGGCGGGAGACGAGGAAGACGAGAACA CAACGCTGCGCAAGAAGGGTAAGGGGGAATCGGGTAAGGAAGGCTCTACG ACGGAGGAGGGAGAGGAAGACGACAGCGCGTCCAACGGCTGCATGTCCGG TGGGGGGGAGGGAGGACAGGGTCGTGCCCCCAGCGCCTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig775:2295..3584-

>mRNA_E_fasciculatus_S2_contig775.15914.1 ID=mRNA_E_fasciculatus_S2_contig775.15914.1|Name=mRNA_E_fasciculatus_S2_contig775.15914.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1290bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig775:2295..3584- (Ectocarpus fasciculatus EfasUO2)
ATGGCGAGCTGGTCCGACTTGTGCTCGATTGTGGCGTTGTGTGCCGCGGT
TGGCTGCTTCCGACTGTTGCTCATCCTCCGCCGGCACGTGTCACTGCTTG
CTGGGGCTGCTGCATCCAATGTGCTCGACAACAACGAAAGCAAGAGAGGG
CGTGAGCGCGCCCGTGATCTTAGGGTTGCCGAAACCAGGTCAACGCCCAG
GGGGGCTCACCAGACGAGGAACCGAGTCGACCCCCAGGGCTTTGTTTTCA
GCGGCAGGTTTGAGAGGGTGTGGCTGGCTTTCGACAGTCTTCTCGACCGC
GCGGCGGTAGTGGAGAATGACGCGAGCCTCGACAGCGATGCGAACCTCTT
GAAGAGAACGTTTTCCGCCGCGGTCGAGGATGCCGTCGCCGCCGGCATCG
CGGCCGCAGAGCAGAAGATGGTGCTGGCCTTCCAGGTCAAGATGGCGCAG
GTCCTCGTGAAGGAGATGGGGGAGTGGCGCGTGATGCAGGAGGGCCGGGA
GGCGTGGTGGCAGAGGAAGTTCGACCGCGAAGAGAACAAGCTTGGCACTG
CGCTCGCCGCCGCGGTCGCTTCGCACGAGGACGCCATGGCCGCGCGCGAC
AGGAAATGCGCAGCAACCGTCGCCTCCGTCCGTGACGAGGTCCTCCAGCT
GAAGGAGCAAGCTGCCGTCAATGCTGCGGGGAAGGCGGCCGACGATGCTG
CAAGGGAGAAGGCGGCATTGGCCAATATCCTCCGCTCCATTAACGCGACA
CACCAGAGACAGCAGGAGGAGTTGGTGGGGTTGCAGCAGGAGATGCGTGA
GGGCTTGGCGCGGAAGGTGGAGGAAGCATATTCGGCGTCCCGCCACGGCG
ACCGGCCGAGTGCTGCCGCGGACGCGTCGCCACCGCCGCCGCCGTCGATG
GACGACACAACCAAGCTCCGCAACGTCAAGAGCGACCTCGACTCTCTCGG
AGCCCGCCTCCTTGTCCTCGAGGGCATAGCGAGCCCGAGAAGGCAAAAGA
GAATCCTTTACCGGGTCCACGAGCGCGTCTTGGAGTCATTCAGGGTCTGG
GGGGAGGAGCCGTTCGTCGGACCCCAGTATTCGAACTGGGTGCTCAGGAA
GGCTAGTGGAAAGACAGGGCCCGGGGCGGGAGACGAGGAAGACGAGAACA
CAACGCTGCGCAAGAAGGGTAAGGGGGAATCGGGTAAGGAAGGCTCTACG
ACGGAGGAGGGAGAGGAAGACGACAGCGCGTCCAACGGCTGCATGTCCGG
TGGGGGGGAGGGAGGACAGGGTCGTGCCCCCAGCGCCTAG
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