mRNA_E_fasciculatus_S2_contig7746.15911.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7746.15911.1
Unique NamemRNA_E_fasciculatus_S2_contig7746.15911.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7746.15911.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP2_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 3.100e-35
Identity = 65/75 (86.67%), Postives = 68/75 (90.67%), Query Frame = 1 
Query:    1 SGFVKDYRAIQRSCLGLCNACRDGVPVERMLIREGVPQTRLAMVLPNVVQAQQGAEITPTRVLQPRRVLRLEWTF 225
            SGFVKDYRA Q SCLGLCNACR+GVPVERMLI EGVPQTRLAMVLP VVQAQ  A+I PTRVLQPRRVLRL+WTF
Sbjct:   29 SGFVKDYRATQASCLGLCNACREGVPVERMLIAEGVPQTRLAMVLPKVVQAQWEADIPPTRVLQPRRVLRLKWTF 103
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7746.15911.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV6_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 1.590e-32
Identity = 60/75 (80.00%), Postives = 66/75 (88.00%), Query Frame = 1 
Query:    1 SGFVKDYRAIQRSCLGLCNACRDGVPVERMLIREGVPQTRLAMVLPNVVQAQQGAEITPTRVLQPRRVLRLEWTF 225
            SGF+KD R++Q SCLGLCNACR+GVPVERML+RE VPQ  LAMVLPN VQAQ+ AEI PTRVL PRRVLRLEWTF
Sbjct:   29 SGFMKDCRSVQESCLGLCNACREGVPVERMLVREWVPQILLAMVLPNAVQAQREAEIPPTRVLHPRRVLRLEWTF 103
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7746.15911.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHT8_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 2.490e-15
Identity = 44/66 (66.67%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:   88 MLIREGVPQTRLAMVLPNVVQAQQGAEITPTRVLQPRRVLRLEWTFTRRAARVKAADKAADSTAGA 285
            MLI EGVPQ RLA VLPNVVQAQ+ A+I PTRVLQPRRVLRL+WTF  RA   +  ++  +S AGA
Sbjct:    1 MLIGEGVPQIRLATVLPNVVQAQRQADIPPTRVLQPRRVLRLKWTFRSRAWWTETTEETPNSWAGA 66
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7746.15911.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized3.100e-3586.67protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.590e-3280.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.490e-1566.67protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7746contigE_fasciculatus_S2_contig7746:4930..5216 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size287
Hectar predicted targeting categoryother localisation
Exons1
Cds size285
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842436.5253205-CDS-E_fasciculatus_S2_contig7746:4929..52141696842436.5253205-CDS-E_fasciculatus_S2_contig7746:4929..5214Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7746 4930..5214 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7746.15911.1prot_E_fasciculatus_S2_contig7746.15911.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7746 4930..5214 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7746.15911.1

>prot_E_fasciculatus_S2_contig7746.15911.1 ID=prot_E_fasciculatus_S2_contig7746.15911.1|Name=mRNA_E_fasciculatus_S2_contig7746.15911.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=95bp
SGFVKDYRAIQRSCLGLCNACRDGVPVERMLIREGVPQTRLAMVLPNVVQ
AQQGAEITPTRVLQPRRVLRLEWTFTRRAARVKAADKAADSTAGA
back to top

mRNA from alignment at E_fasciculatus_S2_contig7746:4930..5216+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7746.15911.1 ID=mRNA_E_fasciculatus_S2_contig7746.15911.1|Name=mRNA_E_fasciculatus_S2_contig7746.15911.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=287bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7746:4930..5216+ (Ectocarpus fasciculatus EfasUO2)
TCCGGCTTCGTGAAGGACTATCGGGCCATACAACGATCTTGCCTTGGCCT
GTGCAACGCTTGTCGAGACGGGGTTCCAGTGGAGCGCATGCTTATCCGCG
AAGGGGTGCCGCAGACACGCCTGGCGATGGTCCTCCCAAATGTGGTTCAA
GCGCAGCAGGGGGCTGAAATTACACCGACGAGAGTCCTGCAACCTCGCAG
GGTGCTGAGGTTGGAGTGGACTTTCACTCGCCGTGCAGCGCGGGTCAAGG
CTGCCGACAAGGCTGCTGACTCTACGGCAGGTGCTCC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7746:4930..5216+

>mRNA_E_fasciculatus_S2_contig7746.15911.1 ID=mRNA_E_fasciculatus_S2_contig7746.15911.1|Name=mRNA_E_fasciculatus_S2_contig7746.15911.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=285bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7746:4930..5216+ (Ectocarpus fasciculatus EfasUO2)
TCCGGCTTCGTGAAGGACTATCGGGCCATACAACGATCTTGCCTTGGCCT
GTGCAACGCTTGTCGAGACGGGGTTCCAGTGGAGCGCATGCTTATCCGCG
AAGGGGTGCCGCAGACACGCCTGGCGATGGTCCTCCCAAATGTGGTTCAA
GCGCAGCAGGGGGCTGAAATTACACCGACGAGAGTCCTGCAACCTCGCAG
GGTGCTGAGGTTGGAGTGGACTTTCACTCGCCGTGCAGCGCGGGTCAAGG
CTGCCGACAAGGCTGCTGACTCTACGGCAGGTGCT
back to top