mRNA_E_fasciculatus_S2_contig7741.15909.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7741.15909.1
Unique NamemRNA_E_fasciculatus_S2_contig7741.15909.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7741.15909.1 vs.
Match: Ubiquitin-like (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAX4_ECTSI)

HSP 1 Score: 317 bits (812), Expect = 2.120e-98
Identity = 249/267 (93.26%), Postives = 253/267 (94.76%), Query Frame = 1 
Query:    1 QVGAVPGGEACIRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQRALATLPGAPSAAGASTGGFAGGLGVLPPPGAFPQAGFGGGMGGGGMPDMATMARMAQNPAVMQGXXXXXXXXXXXXXXXXXXXXMQSVMARPGGLAQAFDAIQNNPAMXXXXXXXXXXXXALQRAAQMDFGGALAAGINATTPNAAQGFQPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAGEEGKEMTEDELIAEAIRRSMED 801
            +VGAVPGGEAC+RALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQRALATLPGAP+AAGASTGGFAGGLGVLPPPGAFPQAGFGGG GGGGMPDMATMARMAQNPAVMQGXXXXXXXXXXXXXXXXXXXXMQSVMARPGGLAQAF+AIQNNPAMXXXXXXXXXX  ALQRAAQMDFGGALAAGINA  PNAAQGFQ PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        EAGEEGKEMTEDELIAEAIRRSMED
Sbjct:  195 KVGAVPGGEACMRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQRALATLPGAPAAAGASTGGFAGGLGVLPPPGAFPQAGFGGGTGGGGMPDMATMARMAQNPAVMQGXXXXXXXXXXXXXXXXXXXXMQSVMARPGGLAQAFEAIQNNPAMXXXXXXXXXXPTALQRAAQMDFGGALAAGINAAPPNAAQGFQAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASEGGG--EAGEEGKEMTEDELIAEAIRRSMED 459
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7741.15909.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Ubiquitin-like2.120e-9893.26domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7741contigE_fasciculatus_S2_contig7741:4984..7072 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score323.9
Seed ortholog evalue6.9e-86
Seed eggNOG ortholog2880.D8LAX4
Model size1843
KEGG koko:K04523
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0016043,GO:0019538,GO:0019941,GO:0022402,GO:0022607,GO:0030163,GO:0030433,GO:0030474,GO:0030674,GO:0031023,GO:0032446,GO:0033554,GO:0034976,GO:0036211,GO:0036503,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0050896,GO:0051300,GO:0051603,GO:0051716,GO:0060090,GO:0070647,GO:0071704,GO:0071840,GO:1901564,GO:1901565,GO:1901575,GO:1901698
Exons2
EggNOG free text desc.ubiquitin
EggNOG OGsCOG5272@1,KOG0010@2759
Ec32 ortholog descriptionPUG domain
Ec32 orthologEc-27_006090.1
Cds size804
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03051,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842436.3551106-UTR-E_fasciculatus_S2_contig7741:4983..60221696842436.3551106-UTR-E_fasciculatus_S2_contig7741:4983..6022Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7741 4984..6022 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842436.36773-CDS-E_fasciculatus_S2_contig7741:6022..64241696842436.36773-CDS-E_fasciculatus_S2_contig7741:6022..6424Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7741 6023..6424 -
1696842436.3770857-CDS-E_fasciculatus_S2_contig7741:6670..70721696842436.3770857-CDS-E_fasciculatus_S2_contig7741:6670..7072Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7741 6671..7072 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7741.15909.1prot_E_fasciculatus_S2_contig7741.15909.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7741 6023..7072 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7741.15909.1

>prot_E_fasciculatus_S2_contig7741.15909.1 ID=prot_E_fasciculatus_S2_contig7741.15909.1|Name=mRNA_E_fasciculatus_S2_contig7741.15909.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=268bp
QVGAVPGGEACIRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQRAL
ATLPGAPSAAGASTGGFAGGLGVLPPPGAFPQAGFGGGMGGGGMPDMATM
ARMAQNPAVMQGMMNDPSVQAMMRSNPQMAAAMQSVMARPGGLAQAFDAI
QNNPAMAQMAQQMMQDPAALQRAAQMDFGGALAAGINATTPNAAQGFQPP
PAGGQGGAPVAPSPAAGAAPSPPPAAAAAAAAAVPPGSAGGGEAGEEGKE
MTEDELIAEAIRRSMED*
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mRNA from alignment at E_fasciculatus_S2_contig7741:4984..7072-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7741.15909.1 ID=mRNA_E_fasciculatus_S2_contig7741.15909.1|Name=mRNA_E_fasciculatus_S2_contig7741.15909.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2089bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7741:4984..7072- (Ectocarpus fasciculatus EfasUO2)
CAGGTTGGAGCGGTGCCGGGCGGAGAGGCTTGCATACGAGCCCTCGGCTT
CGTCGAGCACGGGGACGCGCAAGAGAGCTGGCTCCTGGCCCCCAGCGAAG
CAGCCTGGAACGTTCTCACCGCCGGTCGCGTAGACATCCAGAGAGCTCTG
GCGACCCTCCCGGGGGCGCCGTCGGCTGCTGGCGCGTCCACCGGCGGCTT
CGCGGGGGGGTTGGGGGTGCTCCCTCCCCCCGGGGCGTTTCCCCAGGCGG
GGTTCGGGGGCGGGATGGGGGGAGGGGGCATGCCGGACATGGCGACGATG
GCGAGAATGGCGCAGAACCCGGCGGTGATGCAGGGGATGATGAACGACCC
TTCGGTGCAGGCTATGATGAGGAGCAACCCGCAGATGGCGGCCGCGATGC
AGGTGTGTTTTGTCGGTGTGATGTTTTCAGCAAGGGTTGTGGGTAATGCA
TGTAGCAGCTCACGGCTTTTGGCGACATCGAGGTATCGATGCATGTGCTT
CCTGCCACAGCAGTGCAGTGCCTGCGTTGTTGGTCTCCCGCTTATTTTTT
TTTGCCTCTACTACTACTGTATGCCATCTTAAATCCTTCTCCTCGTCCCC
TTCACGCTCCGAAACCTCCTGTCTGCCCCTCGCAACTCTTATGCGCAGTC
CGTGATGGCCAGACCGGGTGGGCTGGCTCAGGCATTCGACGCGATACAAA
ACAACCCGGCGATGGCCCAGATGGCCCAGCAGATGATGCAGGACCCGGCC
GCTCTTCAGCGGGCCGCCCAGATGGATTTCGGAGGCGCCCTCGCGGCGGG
AATTAACGCCACGACACCCAACGCCGCACAGGGGTTCCAACCACCCCCCG
CAGGCGGGCAGGGCGGGGCTCCCGTTGCGCCGTCCCCTGCTGCTGGTGCT
GCTCCCTCGCCACCACCTGCAGCAGCGGCGGCGGCGGCGGCGGCGGTGCC
CCCGGGCTCGGCAGGAGGTGGGGAAGCGGGGGAGGAGGGGAAGGAGATGA
CGGAAGACGAGCTGATTGCGGAGGCGATTCGGAGATCTATGGAGGACTAG
CTTTTTGTTCTCGTTCCGTTCGTTTCCGAACGGTTCAATTTTTGCGTGGG
TCGGCGGCAGGGCTTGCTTTTCGCTACACTCTGCAGCACCGCGGCGTTGT
TTTTATGTCTTTTTGGGAGGGAGAGGGAGGCTTTTGCTGTGCGGCTGTAT
ATATAAGCTGTAAATGAAGGCACTTTTGTCCTTTATGCACGCACGTTCTT
GAGCTCTGTCCAGCATGCTTGCTTTCCCGGTTGCGGGAATGTGGGATGGA
CACCCTCGTATTTAGTGTACGGCACCACCTCGATTGGCCACGTCTGCCTT
CCATAGTACGTAGAGGCGCGGTTTGAAGGCGGGACTAGCAGCGCGACGTG
CGTTTGCACGTCGGTGCTTTAGTAGGCAGGAGTATCAGAGATTATTGGTT
GTGGTGATGGATGTTGGGTTTGACCGCATGTCAGGGTCAGACAAACAACA
GCGCAGTGTTCGATACATGTATGAACAGAAATCTGCAGGAAGTATAAAAT
CAACACAAACATGCTCTTCTGTTCGTTTGAGGAGCACAACCACAACTGCC
GTAAAACAGCAGTGGGTTGTTGCAGTTTGTCCTCCCGAAAAATTAGCTGC
AAGCTCTGTAGTTTCGATCCCTCCCTTTTTCGTCCTGAATGCTTGACGAA
AGTTGCATGTGTGTACACGAACAGCTGAACGAAGTACAGCAGTTTCCCCA
GGTGGTGCGCGCGGGTGTGCATGGTGTGGACCTTCTCACTCTTGTTATTG
TTACTCTCGGCTTTGAGACCGCTTGTGACGCCTGCACCTAACGCAGTTCA
CCACTCGACGCAAGAAATCCTGGCCTCAGCTAGCCCAGGGTATCAAGCCA
TCCTGCCTCGTCCCTATGCATACTTCTGTACACCAGCACCGTCCGTCGAT
GCGTGACGTAGGATATCACAGCCCCCCCGACCGATTTTCAAAGCTCAATC
ACCCTTCACAAGCATACAGAGTGGTGGGCGGTGCCGATATGTCGATCCGA
AAATGGCAGGGTTGGTTGGAACCGTCTCGTCTAGTGTGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7741:4984..7072-

>mRNA_E_fasciculatus_S2_contig7741.15909.1 ID=mRNA_E_fasciculatus_S2_contig7741.15909.1|Name=mRNA_E_fasciculatus_S2_contig7741.15909.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=804bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7741:4984..7072- (Ectocarpus fasciculatus EfasUO2)
CAGGTTGGAGCGGTGCCGGGCGGAGAGGCTTGCATACGAGCCCTCGGCTT
CGTCGAGCACGGGGACGCGCAAGAGAGCTGGCTCCTGGCCCCCAGCGAAG
CAGCCTGGAACGTTCTCACCGCCGGTCGCGTAGACATCCAGAGAGCTCTG
GCGACCCTCCCGGGGGCGCCGTCGGCTGCTGGCGCGTCCACCGGCGGCTT
CGCGGGGGGGTTGGGGGTGCTCCCTCCCCCCGGGGCGTTTCCCCAGGCGG
GGTTCGGGGGCGGGATGGGGGGAGGGGGCATGCCGGACATGGCGACGATG
GCGAGAATGGCGCAGAACCCGGCGGTGATGCAGGGGATGATGAACGACCC
TTCGGTGCAGGCTATGATGAGGAGCAACCCGCAGATGGCGGCCGCGATGC
AGTCCGTGATGGCCAGACCGGGTGGGCTGGCTCAGGCATTCGACGCGATA
CAAAACAACCCGGCGATGGCCCAGATGGCCCAGCAGATGATGCAGGACCC
GGCCGCTCTTCAGCGGGCCGCCCAGATGGATTTCGGAGGCGCCCTCGCGG
CGGGAATTAACGCCACGACACCCAACGCCGCACAGGGGTTCCAACCACCC
CCCGCAGGCGGGCAGGGCGGGGCTCCCGTTGCGCCGTCCCCTGCTGCTGG
TGCTGCTCCCTCGCCACCACCTGCAGCAGCGGCGGCGGCGGCGGCGGCGG
TGCCCCCGGGCTCGGCAGGAGGTGGGGAAGCGGGGGAGGAGGGGAAGGAG
ATGACGGAAGACGAGCTGATTGCGGAGGCGATTCGGAGATCTATGGAGGA
CTAG
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