mRNA_E_fasciculatus_S2_contig7741.15908.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7741.15908.1
Unique NamemRNA_E_fasciculatus_S2_contig7741.15908.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7741.15908.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX3_ECTSI)

HSP 1 Score: 337 bits (864), Expect = 2.320e-115
Identity = 182/225 (80.89%), Postives = 189/225 (84.00%), Query Frame = 2 
Query:    2 QAGN-GRVPDPSEVFQTRRGGAMDPHTRLPGYTCSTMLGVTQVWFTAHHVGHVLKTLRSGRLDDLHRRMKRNPHVLDARVCRAVIWWSILAEAMEAAKDAERRRARRRECRRLVVGLAVSQRRSDPGSRRGKTSTHHQXXRATGGSRSGMSRSSSRTWSLPPLTEAVHHLKGXXXXXXXXXXXXXXXXXXXXXXXXXXXAPTGVRECRTVHLDEAAILNKVYEFL 673
            QAG+ GRVPDPSEVFQTRRGGAMDPHTRLPGYTCSTMLGVTQVWFTAHHVGHVLKTLRSGRLDDLHRRMKRNPHVLDARVCRAVIWWSILAEAMEAAK+AERRRA  RECRRLVVGLAVSQRRSDPG+RRGKTSTH Q  RA+GGSRSGMSRSSSRTWSLPPLTEA+H LKG                           AP+ VRECR VHLDEAAILNK+YEFL
Sbjct:    3 QAGSAGRVPDPSEVFQTRRGGAMDPHTRLPGYTCSTMLGVTQVWFTAHHVGHVLKTLRSGRLDDLHRRMKRNPHVLDARVCRAVIWWSILAEAMEAAKEAERRRAXXRECRRLVVGLAVSQRRSDPGTRRGKTSTHEQQ-RASGGSRSGMSRSSSRTWSLPPLTEAIH-LKGGEEDQGFSSGGGGRAPCHGGAVA----APSVVRECRAVHLDEAAILNKIYEFL 221
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BLAST of mRNA_E_fasciculatus_S2_contig7741.15908.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYH9_9PHAE)

HSP 1 Score: 270 bits (690), Expect = 5.270e-89
Identity = 151/218 (69.27%), Postives = 155/218 (71.10%), Query Frame = 2 
Query:   65 MDPHTRLPGYTCSTMLGVTQV---------------WFTAHHVGHVLKTLRSGRLDDLHRRMKRNPHVLDARVCRAVIWWSILAEAMEAAKDAERRRARRRECRRLVVGLAVSQRRSDPGSRRGKTSTHHQXXRATGGSRSGMSRSSSRTWSLPPLTEAVHHLKGXXXXXXXXXXXXXXXXXXXXXXXXXXXAPTGVRECRTVHLDEAAILNKVYEFL 673
            MDPHTRLPGYTCSTMLGVTQV               WFTAHHVGHVLKTLRSGRLDDLHRRMKRNPHVLDARVCRAVIWWSILAEAMEAAK+         ECRRLVVGLAVSQRRSDPG+RRGKT TH Q   + G SRSGMSRSSSRTWSLPPLT+A H LKG                           AP  VRECR VHLDEAAILNKVYEFL
Sbjct:    1 MDPHTRLPGYTCSTMLGVTQVIDGSHQATSDLAPDVWFTAHHVGHVLKTLRSGRLDDLHRRMKRNPHVLDARVCRAVIWWSILAEAMEAAKEXXXXXXXXXECRRLVVGLAVSQRRSDPGTRRGKTFTHEQQRASGGSSRSGMSRSSSRTWSLPPLTDATH-LKGGEEDQGVSSGGGWRAPCHGGAVA----APPAVRECRAVHLDEAAILNKVYEFL 213
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7741.15908.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.320e-11580.89protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized5.270e-8969.27protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7741contigE_fasciculatus_S2_contig7741:1026..3674 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size675
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_006110.1
Cds size636
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842436.2822366-UTR-E_fasciculatus_S2_contig7741:1025..10621696842436.2822366-UTR-E_fasciculatus_S2_contig7741:1025..1062Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7741 1026..1062 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842436.2931132-CDS-E_fasciculatus_S2_contig7741:1062..15001696842436.2931132-CDS-E_fasciculatus_S2_contig7741:1062..1500Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7741 1063..1500 -
1696842436.303733-CDS-E_fasciculatus_S2_contig7741:1767..18411696842436.303733-CDS-E_fasciculatus_S2_contig7741:1767..1841Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7741 1768..1841 -
1696842436.3141487-CDS-E_fasciculatus_S2_contig7741:3550..36741696842436.3141487-CDS-E_fasciculatus_S2_contig7741:3550..3674Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7741 3551..3674 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7741.15908.1prot_E_fasciculatus_S2_contig7741.15908.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7741 1063..3674 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7741.15908.1

>prot_E_fasciculatus_S2_contig7741.15908.1 ID=prot_E_fasciculatus_S2_contig7741.15908.1|Name=mRNA_E_fasciculatus_S2_contig7741.15908.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=212bp
TSWQWPRARSQRSISDTERGSDGPAHTATGLHVLDNAGRHTGVVHSTSRG
PRPENAAIGPIGRPSQENEAQPARAGRPRVPGGHLVEHSCGGDGGREGCR
AAAGEAARVPSVGGRARRLAAAERPGLSARQDQHAPPTATSHGGVPIGHV
PLVLSHVVTPAINGSGSSPQGRRGGPRGFQRWWRACSLPRGGGGGGGGGA
DGCSGVSHGSP*
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mRNA from alignment at E_fasciculatus_S2_contig7741:1026..3674-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7741.15908.1 ID=mRNA_E_fasciculatus_S2_contig7741.15908.1|Name=mRNA_E_fasciculatus_S2_contig7741.15908.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2649bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7741:1026..3674- (Ectocarpus fasciculatus EfasUO2)
ACAAGCTGGCAATGGCCGCGTGCCCGATCCCAGCGAAGTATTTCAGACAC
GGAGAGGGGGAGCGATGGACCCGCACACACGGCTACCGGGCTACACGTGC
TCGACAATGCTGGGCGTCACACAGGTGATCATTGACGCACACCAAGCAAG
CACTGACGCCGCTCGCGGTAGCTGTAAGGGAGCATGTGCGTTCTTATGAC
ACGTCCTGAACACCCACCCTCTTTCCCGTATAGTCTAATATCACACAGCA
GCCCCCGCATTTGATCCTGCGTATCCGTTACACATCACATCATCTACAGA
GTACAGCGAGTCACCAGTTTTTTTTTGAGCTGACCTACTGCTGTGCTGAC
TACTGCTGTTGCTGTAGGATGATGTTCTTTGGGGTGTCTGCGGGAAGGTT
AAGCTTGGTGGGCGATGCAGAGAGACCCAGACCTGCAGCTTGAAAAGCAG
AGAGGCGTGACGACAGAAGGTCAACTGCTGCTGCTGCTGTAGTTTGACAG
TTTGGGCAGCGGCAGACACATGATACCGAATTTCGCTGTTTGGTTTGGGA
AGGAAGAGTCCGCACGAAAGGACTGGCCTCCTTCCATATCAGTCTCCTAA
GGGAATGTGTTGGTTACAGCAGTAGTATCATACAACAGCACAAGTATTTA
GTGAGGATTTAAATAGTGACGGTTTGTTCTTGTTTGGTTTTGTATTTCCA
CTCAATCCTTGTCGTTGAGGAATTCAGGAGGTATTCTACATACAGCGGAG
TAGACAAATTGCTGCGGTGCTGCTGTACTTGTACGACAAGAAGAGCGATG
ACAATGACACTGGCATCAGCGTCGCGTTTTCTACTGATCAAGACGATTGG
TCCCGTTCCCTCGAGCATGACGGGGACTATTCATGTTAGATCTGTGTACA
CAGTACTGTAGTTCAACCTCGCACAAACAGGCGGGGACTATATTATGAGG
GGCGAGATTGAGATTCAACGTCACTTGACGTGTCGAAAGGCGGACGAAAA
TGCATCACATCCGCATTTTAAGTAGTGTAGGGTAGCGCGGCACCGATATG
ACGATGGCTTGAATATGCTGCCACTTACAGTAGTGATGGGACAACAGGAG
AAGACTGTTTCCGCGTACTGCTGTAGACATTTACAAGGTAGAGGTGAAGC
CCGAGCTCCTTATCATCACCCTTCATGACATGATTCCTGCACTACAGTAG
CGGCCGCTTACTAGAATCACTTTCGGCCTAGGCTTGAAGTCTCATCTTGT
CTCCAACATTGAGCACAGGCTACTGCCATACTTCTGTTGCATATCAGCAG
GGTTTAGTTTAGTATCGTGTAAAAGGCTGGGCCCAGGTGCTTGGGAGTCT
CTCAAATTTGTATAAACTCCAAGCCTCGAGTTCGTATAACTGTTTCATAA
AACTTGATCCATACGGGCCGGCAGCTATTGTACTGGAAGAAGACCAGGGT
TGGCATTGTTACCTTGGCAAGTGCACACGTGCCGAAGGCTTGGATGCTCT
GATGGTGCTGACATAAGACACGCAGAGCAAGGTCGATTGGGATTTGAAGG
GCGGGAAAGGAACCGCCGAAAAGGACTGAGTTCCACCGGTCTCGTATTTT
GACACACGTGCGAGAAGGTGCCCAACGGGTTAATGTTTCCTCCGGTAGGA
GCGGTGACGGCATGTTCATTCCGGGGATATAGGAAAGGGCCGATGCGAGG
TCATTGGCTAAACGGCAAAGGAAACATACATTCGATTAGCGTGACACCCC
CCTTCCGCCCCCTCTCTCTGCCCTCGGGTGTGCCGGCCGCAACTGCTTGT
ACCTGGTCGCAACTCTACAATTGCTGTTGTCAGGTGTGGTTCACAGCACA
TCACGTGGGCCACGTCCTGAAAACGCTGCGATCGGGCCGATTGGACGACC
TTCACAGGTACTGCTGTAGAGGGTTATGTACCATTGAAGGATTTATGTGC
CATCACGATTGTCCGGAACCCCTCTGAGCCTATTTTGTGCTGCGAGCCGA
TTGGACTGCATCCTTTGCCACCCGCCAATGCTCAAGGCACAAGCCACGAC
TCGCCCACGACAATCGAAGGAGAAGGCACAGGCAGCTAGAATCTACGTTC
GCAAGCATTCAACTACTCGCGAAGACTACGCCCTCTCGAAGACCTAATCA
CCCCCCCCCCGTCCTGTCCCGCAGGAGAATGAAGCGCAACCCGCACGTGC
TGGACGCCCGCGTGTGCCGGGCGGTCATCTGGTGGAGCATTCTTGCGGAG
GCGATGGAGGCCGCGAAGGATGCCGAGCGGCGGCGGGCGAGGCGGCGAGA
GTGCCGTCGGTTGGTGGTCGGGCTCGCCGTCTCGCAGCGGCGGAGCGACC
CGGGCTCTCGGCGAGGCAAGACCAGCACGCACCACCAACAGCAACGAGCC
ACGGGGGGGTCCCGATCGGGCATGTCCCGCTCGTCCTCTCGCACGTGGTC
ACTCCCGCCATTAACGGAAGCGGTTCATCACCTCAAGGGCGGCGAGGAGG
ACCAAGGGGTTTCCAGCGGTGGTGGAGGGCGTGCTCCCTGCCACGGGGGG
GCGGTGGCGGCGGCGGCGGCGGCGCCGACGGGTGTTCGGGAGTGTCGCAC
GGTTCACCTTGATGAGGCGGCTATCCTCAACAAAGTCTACGAGTTCTTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7741:1026..3674-

>mRNA_E_fasciculatus_S2_contig7741.15908.1 ID=mRNA_E_fasciculatus_S2_contig7741.15908.1|Name=mRNA_E_fasciculatus_S2_contig7741.15908.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=636bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7741:1026..3674- (Ectocarpus fasciculatus EfasUO2)
ACAAGCTGGCAATGGCCGCGTGCCCGATCCCAGCGAAGTATTTCAGACAC
GGAGAGGGGGAGCGATGGACCCGCACACACGGCTACCGGGCTACACGTGC
TCGACAATGCTGGGCGTCACACAGGTGTGGTTCACAGCACATCACGTGGG
CCACGTCCTGAAAACGCTGCGATCGGGCCGATTGGACGACCTTCACAGGA
GAATGAAGCGCAACCCGCACGTGCTGGACGCCCGCGTGTGCCGGGCGGTC
ATCTGGTGGAGCATTCTTGCGGAGGCGATGGAGGCCGCGAAGGATGCCGA
GCGGCGGCGGGCGAGGCGGCGAGAGTGCCGTCGGTTGGTGGTCGGGCTCG
CCGTCTCGCAGCGGCGGAGCGACCCGGGCTCTCGGCGAGGCAAGACCAGC
ACGCACCACCAACAGCAACGAGCCACGGGGGGGTCCCGATCGGGCATGTC
CCGCTCGTCCTCTCGCACGTGGTCACTCCCGCCATTAACGGAAGCGGTTC
ATCACCTCAAGGGCGGCGAGGAGGACCAAGGGGTTTCCAGCGGTGGTGGA
GGGCGTGCTCCCTGCCACGGGGGGGCGGTGGCGGCGGCGGCGGCGGCGCC
GACGGGTGTTCGGGAGTGTCGCACGGTTCACCTTGA
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