mRNA_E_fasciculatus_S2_contig774.15905.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig774.15905.1
Unique NamemRNA_E_fasciculatus_S2_contig774.15905.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig774.15905.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig774contigE_fasciculatus_S2_contig774:2627..3267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size642
Hectar predicted targeting categoryother localisation
Exons1
Cds size624
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842436.0153801-UTR-E_fasciculatus_S2_contig774:2626..26431696842436.0153801-UTR-E_fasciculatus_S2_contig774:2626..2643Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig774 2627..2643 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842436.0266457-CDS-E_fasciculatus_S2_contig774:2643..32671696842436.0266457-CDS-E_fasciculatus_S2_contig774:2643..3267Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig774 2644..3267 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig774.15905.1prot_E_fasciculatus_S2_contig774.15905.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig774 2644..3267 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig774.15905.1

>prot_E_fasciculatus_S2_contig774.15905.1 ID=prot_E_fasciculatus_S2_contig774.15905.1|Name=mRNA_E_fasciculatus_S2_contig774.15905.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=208bp
MSQDKMTMNPQRCGALLPSVCTASSTRRFSILFRVTTRTVNFEFWVRAKK
KKESLSIVSIVSRGGDRLIDATHTVPRMTFSVLITKKNYCRKKRILKGRP
AHQQTIPPASRPTRRPDSSPVATAHHVQSVGGGRTAIGLHKSRPRSLEVL
ISNKKHRTLGQPLGHGEVAVSAKTGVPCTTAVGRLKTLLVSPPWCACTWF
ACRQNQIR
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mRNA from alignment at E_fasciculatus_S2_contig774:2627..3267+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig774.15905.1 ID=mRNA_E_fasciculatus_S2_contig774.15905.1|Name=mRNA_E_fasciculatus_S2_contig774.15905.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=641bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig774:2627..3267+ (Ectocarpus fasciculatus EfasUO2)
TCTCCATCCACAGATAGATGAGCCAGGATAAAATGACCATGAATCCACAG
CGTTGCGGAGCACTGCTACCCAGTGTTTGTACCGCGAGCAGCACAAGGCG
ATTCTCCATCCTCTTTCGGGTAACAACGCGAACGGTGAATTTTGAATTTT
GGGTACGTGCAAAAAAGAAAAAAGAATCCCTTTCGATAGTTTCGATAGTT
TCTCGTGGGGGCGATAGGCTGATTGACGCCACCCACACAGTCCCGCGGAT
GACATTTTCCGTCCTCATCACAAAAAAAAATTATTGTAGGAAGAAACGAA
TCCTGAAAGGCAGACCAGCACACCAGCAGACCATACCACCAGCAAGCAGA
CCAACCAGAAGACCAGACTCGTCACCTGTCGCTACGGCACATCATGTACA
GAGTGTTGGAGGCGGACGTACGGCCATCGGTCTCCACAAGAGTCGACCCC
GCTCTCTGGAAGTACTGATCTCAAACAAAAAACATCGCACGCTCGGACAG
CCTCTAGGGCACGGAGAGGTGGCCGTCTCAGCAAAGACAGGCGTGCCCTG
CACTACTGCTGTAGGGCGACTCAAGACCCTCCTCGTGTCCCCGCCATGGT
GTGCATGCACCTGGTTTGCCTGTAGACAGAACCAAATTCGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig774:2627..3267+

>mRNA_E_fasciculatus_S2_contig774.15905.1 ID=mRNA_E_fasciculatus_S2_contig774.15905.1|Name=mRNA_E_fasciculatus_S2_contig774.15905.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=624bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig774:2627..3267+ (Ectocarpus fasciculatus EfasUO2)
ATGAGCCAGGATAAAATGACCATGAATCCACAGCGTTGCGGAGCACTGCT
ACCCAGTGTTTGTACCGCGAGCAGCACAAGGCGATTCTCCATCCTCTTTC
GGGTAACAACGCGAACGGTGAATTTTGAATTTTGGGTACGTGCAAAAAAG
AAAAAAGAATCCCTTTCGATAGTTTCGATAGTTTCTCGTGGGGGCGATAG
GCTGATTGACGCCACCCACACAGTCCCGCGGATGACATTTTCCGTCCTCA
TCACAAAAAAAAATTATTGTAGGAAGAAACGAATCCTGAAAGGCAGACCA
GCACACCAGCAGACCATACCACCAGCAAGCAGACCAACCAGAAGACCAGA
CTCGTCACCTGTCGCTACGGCACATCATGTACAGAGTGTTGGAGGCGGAC
GTACGGCCATCGGTCTCCACAAGAGTCGACCCCGCTCTCTGGAAGTACTG
ATCTCAAACAAAAAACATCGCACGCTCGGACAGCCTCTAGGGCACGGAGA
GGTGGCCGTCTCAGCAAAGACAGGCGTGCCCTGCACTACTGCTGTAGGGC
GACTCAAGACCCTCCTCGTGTCCCCGCCATGGTGTGCATGCACCTGGTTT
GCCTGTAGACAGAACCAAATTCGC
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