mRNA_E_fasciculatus_S2_contig7737.15902.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7737.15902.1
Unique NamemRNA_E_fasciculatus_S2_contig7737.15902.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7737.15902.1 vs.
Match: NLE (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYM1_ECTSI)

HSP 1 Score: 291 bits (746), Expect = 1.330e-92
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 1
Query:    1 VWNVEGEGRKLGILVRTLVGHGHRVNTLALSCEAALRTGPFGKEECALKAVSKFTAEEAQAVALERYNLARGGEPERLVSGSDDFTLFLWNPVDGKKPLARLTGHQQPVNHLAFSPDGRRFASASFDKKVKVWDGRTGTFLA 426
            VWNVEGEGRKLGILVRTLVGHGHRVNTLALSCEAALRTGPFGKEECALKAVSKFT EEAQAVALERYNLARGGEPERLVSGSDDFTLFLWNPVDGKKPLARLTGHQQPVNHLAFSPDGRRFASASFDKKVKVWDGRTGTFLA
Sbjct:  312 VWNVEGEGRKLGILVRTLVGHGHRVNTLALSCEAALRTGPFGKEECALKAVSKFTPEEAQAVALERYNLARGGEPERLVSGSDDFTLFLWNPVDGKKPLARLTGHQQPVNHLAFSPDGRRFASASFDKKVKVWDGRTGTFLA 453          
BLAST of mRNA_E_fasciculatus_S2_contig7737.15902.1 vs.
Match: WD40-repeat-containing (domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH64_9STRA)

HSP 1 Score: 226 bits (577), Expect = 1.680e-67
Identity = 111/141 (78.72%), Postives = 119/141 (84.40%), Query Frame = 1
Query:    1 VWNVEGEGRKLGILVRTLVGHGHRVNTLALSCEAALRTGPFGKEECALKAVSKFTAEEAQAVALERYNLARGGEPERLVSGSDDFTLFLWNPVDGKKPLARLTGHQQPVNHLAFSPDGRRFASASFDKKVKVWDGRTGTFL 423
            VW+++GEGRK GILVRTL GHGHRVNTLALSCE  LRTGPFG      K V+  T EEAQA AL RY  A+G +PERLVSGSDDFTLFLWNPV+ KKPLARLTGHQQ VNH+AFSPDGRRFASASFDKKVKVWDGRTG FL
Sbjct:  305 VWSMDGEGRKFGILVRTLAGHGHRVNTLALSCEYVLRTGPFGH-----KPVTFATPEEAQAAALARYQEAKGTDPERLVSGSDDFTLFLWNPVEDKKPLARLTGHQQAVNHIAFSPDGRRFASASFDKKVKVWDGRTGKFL 440          
BLAST of mRNA_E_fasciculatus_S2_contig7737.15902.1 vs.
Match: Nle1 (protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812QUW9_9DINO)

HSP 1 Score: 197 bits (500), Expect = 5.440e-56
Identity = 153/262 (58.40%), Postives = 168/262 (64.12%), Query Frame = 1
Query:    4 WNVEGEGRKLGILVRTLVGHGHRVNTLALSCEAALRTGPFGKEECALKAVSKFTAEEAQAVALERYNLARGGEPERLVSGSDDFTLFLWNPVDG--KKPLARLTGHQQPVNHLAFSPDGRRFASASFDKKVKVWDGRTGTFLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMVALKSWFGLIVAVQQRCNPLWACHSNISSETKHAHSHPTQRRLHLRAKATLPGHADEVYALDWSPDGSAVASGSKDRTIKIWAH 783
            W+V    R  G L+RTL GHGHRVN LALS EA  RTGPF     A        AE A+  A  RY   R   PERLVS SDD TLFLW P DG  K  LAR+ GHQQPVNH+AFSPD R  ASASFDKKVKVWDG TG FL   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      +   L VA  +R     A  + ++             R   +A  TL GHADEV+ALDWSP+G  VASGS+DRTIKIW+H
Sbjct:  293 WSVTSAAR--GKLIRTLAGHGHRVNCLALSTEAVCRTGPFDHTGAA-----PADAEAAKRAASARYTAVRQLGPERLVSASDDATLFLWTPGDGGSKHHLARMAGHQQPVNHIAFSPDTRLLASASFDKKVKVWDGFTGAFLMTFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPVANA--ALAVAASKRDAGSDAATAKLAGPA----------RAGAKAIYTLSGHADEVFALDWSPNGEKVASGSRDRTIKIWSH 535          
BLAST of mRNA_E_fasciculatus_S2_contig7737.15902.1 vs.
Match: NLE (domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WZJ2_9STRA)

HSP 1 Score: 186 bits (472), Expect = 6.560e-52
Identity = 92/142 (64.79%), Postives = 109/142 (76.76%), Query Frame = 1
Query:    1 VWNVEGEGRKLGILVRTLVGHGHRVNTLALSCEAALRTGPFGKEECALKAVSKFTA-EEAQAVALERYNLARGGEPERLVSGSDDFTLFLWNPVDGKKPLARLTGHQQPVNHLAFSPDGRRFASASFDKKVKVWDGRTGTFL 423
            VW +EGE   +G LVRTL+GHGHR+NTLAL+ +   R+GPFG       A   F++ EE Q  AL+RY   R G+PERLVSGSDDFTLF W P + KKPLARLTGHQQPVNHL+FSPDGR FASASFDKKVK+W+G+TG F+
Sbjct:  324 VWEMEGE--HVGKLVRTLIGHGHRINTLALNVDYVCRSGPFGH------ASRSFSSREEMQEAALKRYQEVRKGQPERLVSGSDDFTLFFWEPAESKKPLARLTGHQQPVNHLSFSPDGRFFASASFDKKVKIWNGQTGKFV 457          
BLAST of mRNA_E_fasciculatus_S2_contig7737.15902.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CSV3_PYTOL)

HSP 1 Score: 183 bits (465), Expect = 4.270e-51
Identity = 90/143 (62.94%), Postives = 106/143 (74.13%), Query Frame = 1
Query:    1 VWNVEGEGRKLGILVRTLVGHGHRVNTLALSCEAALRTGPFGKEECALKAVSKFTA-EEAQAVALERYNLARGGEPERLVSGSDDFTLFLWNPVDGKKPLARLTGHQQPVNHLAFSPDGRRFASASFDKKVKVWDGRTGTFLA 426
            VW +E +G  +G LVRTLVGHGHR+NTLAL+ +   R+GPFG          KF + EE Q  A ERYN  R  +PERLVSGSDDFTLF W P + KKP+ RL GHQQPVNHL+FSPDGR FASASFDKKVK+W+G+TG F+A
Sbjct:  294 VWAME-DGDHVGKLVRTLVGHGHRINTLALNVDYVCRSGPFGHSN------QKFASREEMQQAAQERYNAVRKNQPERLVSGSDDFTLFFWEPAENKKPIERLVGHQQPVNHLSFSPDGRYFASASFDKKVKIWNGQTGKFIA 429          
BLAST of mRNA_E_fasciculatus_S2_contig7737.15902.1 vs.
Match: NLE (domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BAL9_HYAAE)

HSP 1 Score: 183 bits (464), Expect = 9.630e-51
Identity = 91/141 (64.54%), Postives = 106/141 (75.18%), Query Frame = 1
Query:    1 VWNVEGEGRKLGILVRTLVGHGHRVNTLALSCEAALRTGPFGKEECALKAVSKFTAEEAQAVALERYNLARGGEPERLVSGSDDFTLFLWNPVDGKKPLARLTGHQQPVNHLAFSPDGRRFASASFDKKVKVWDGRTGTFL 423
            VW +EG+   +G LVRTLVGHGHR+NTLAL+ +   R+GPFG      K  S  + EE Q  AL+RY   R G+ ERLVSGSDDFTLF W P + KKPLARLTGHQQPVNHL+FSPDGR FASASFDKKVK+W+G TG F+
Sbjct:  300 VWAMEGD--HVGKLVRTLVGHGHRINTLALNVDYVCRSGPFG-----YKTNSFASREEMQHAALKRYEEVRNGQTERLVSGSDDFTLFFWEPSESKKPLARLTGHQQPVNHLSFSPDGRYFASASFDKKVKIWNGHTGKFV 433          
BLAST of mRNA_E_fasciculatus_S2_contig7737.15902.1 vs.
Match: NLE (domain-containing protein n=26 Tax=Peronosporaceae TaxID=4777 RepID=W2R4J3_PHYPN)

HSP 1 Score: 182 bits (463), Expect = 9.720e-51
Identity = 89/141 (63.12%), Postives = 106/141 (75.18%), Query Frame = 1
Query:    1 VWNVEGEGRKLGILVRTLVGHGHRVNTLALSCEAALRTGPFGKEECALKAVSKFTAEEAQAVALERYNLARGGEPERLVSGSDDFTLFLWNPVDGKKPLARLTGHQQPVNHLAFSPDGRRFASASFDKKVKVWDGRTGTFL 423
            VW +EGE   +G LVRTL+GHGHR+NTLAL+ +   R+GPFG            + EE Q  AL+RY   R G+PERLVSGSDDFTLF W P + KKPLARLTGHQQPVNHL+FSPDGR FASASFDK+VK+W+G+TG F+
Sbjct:  303 VWAMEGE--HVGKLVRTLIGHGHRINTLALNVDYVCRSGPFGHNTKGFA-----SREEMQQAALKRYQEVRKGQPERLVSGSDDFTLFFWEPSESKKPLARLTGHQQPVNHLSFSPDGRYFASASFDKEVKIWNGQTGKFV 436          
BLAST of mRNA_E_fasciculatus_S2_contig7737.15902.1 vs.
Match: NLE (domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BAL8_HYAAE)

HSP 1 Score: 183 bits (464), Expect = 8.730e-50
Identity = 91/141 (64.54%), Postives = 106/141 (75.18%), Query Frame = 1
Query:    1 VWNVEGEGRKLGILVRTLVGHGHRVNTLALSCEAALRTGPFGKEECALKAVSKFTAEEAQAVALERYNLARGGEPERLVSGSDDFTLFLWNPVDGKKPLARLTGHQQPVNHLAFSPDGRRFASASFDKKVKVWDGRTGTFL 423
            VW +EG+   +G LVRTLVGHGHR+NTLAL+ +   R+GPFG      K  S  + EE Q  AL+RY   R G+ ERLVSGSDDFTLF W P + KKPLARLTGHQQPVNHL+FSPDGR FASASFDKKVK+W+G TG F+
Sbjct:  300 VWAMEGD--HVGKLVRTLVGHGHRINTLALNVDYVCRSGPFG-----YKTNSFASREEMQHAALKRYEEVRNGQTERLVSGSDDFTLFFWEPSESKKPLARLTGHQQPVNHLSFSPDGRYFASASFDKKVKIWNGHTGKFV 433          
BLAST of mRNA_E_fasciculatus_S2_contig7737.15902.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZG7_HETAK)

HSP 1 Score: 180 bits (457), Expect = 9.230e-50
Identity = 95/145 (65.52%), Postives = 107/145 (73.79%), Query Frame = 1
Query:    1 VWNVEGEGRKLGILVRTLVGHGHRVNTLALSCEAALRTGPFGKEECALKAVSKFTAEEAQA-VALERYNLARGGEP--ERLVSGSDDFTLFLWNPVDGKKPLARLTGHQQPVNHLAFSPDGRRFASASFDKKVKVWDGRTGTFLA 426
            VW+ +  G KLG LVRTLVGHGHRVNTLALS +  LRTGPF          ++F + EA A  A ERYN  +  +P  ERLVSGSDDFTL LW+P +GK+P+ RLTGHQQ VNHL FSPDGR FASASFDKKVKVWDGRTG F A
Sbjct:  313 VWDAD-VGPKLGTLVRTLVGHGHRVNTLALSSDYVLRTGPFDHHG------NRFASPEAAADAAEERYNTFKATQPGPERLVSGSDDFTLILWSPTEGKRPVTRLTGHQQAVNHLQFSPDGRHFASASFDKKVKVWDGRTGKFKA 450          
BLAST of mRNA_E_fasciculatus_S2_contig7737.15902.1 vs.
Match: NLE (domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CAU3_THAPS)

HSP 1 Score: 180 bits (457), Expect = 2.140e-49
Identity = 93/150 (62.00%), Postives = 111/150 (74.00%), Query Frame = 1
Query:    1 VWNVE-GEG---RKLGILVRTLVGHGHRVNTLALSCEAALRTGPF---GKEECALK-AVSKFTAEEAQAVALERYNLARGGEPERLVSGSDDFTLFLWNPVDGKKPLARLTGHQQPVNHLAFSPDGRRFASASFDKKVKVWDGRTGTFLA 426
            VWN E G+G    ++GILV+TL GHGHRVNTLA+SC+   RTGPF   GK + A K   S+   E A   +L +Y   +G EPERL+SGSDDFTL LW+P + KKPL RLTGHQQ VNHLAFSPD R FASASFDKK+KVW+GR+G F+A
Sbjct:  352 VWNAEDGQGVSASRVGILVKTLTGHGHRVNTLAVSCDYICRTGPFDHYGKIDVASKDRDSQEWREAAYQTSLSKYKAFKGSEPERLISGSDDFTLLLWHPTESKKPLKRLTGHQQAVNHLAFSPDSRFFASASFDKKIKVWNGRSGDFVA 501          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7737.15902.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
NLE1.330e-9299.30domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
WD40-repeat-containing1.680e-6778.72domain protein n=1 Tax=Tribonema minus TaxID=30337... [more]
Nle15.440e-5658.40protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 ... [more]
NLE6.560e-5264.79domain-containing protein n=2 Tax=Nothophytophthor... [more]
Uncharacterized4.270e-5162.94protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
NLE9.630e-5164.54domain-containing protein n=1 Tax=Hyaloperonospora... [more]
NLE9.720e-5163.12domain-containing protein n=26 Tax=Peronosporaceae... [more]
NLE8.730e-5064.54domain-containing protein n=1 Tax=Hyaloperonospora... [more]
Hypothetical9.230e-5065.52protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
NLE2.140e-4962.00domain-containing protein n=1 Tax=Thalassiosira ps... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7737contigE_fasciculatus_S2_contig7737:624..1763 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score290.8
Seed ortholog evalue6.3e-76
Seed eggNOG ortholog2880.D7FYM1
Preferred nameNLE1
Model size786
KEGG koko:K07375,ko:K14855
KEGG Pathwayko04145,ko04540,ko05130,map04145,map04540,map05130
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000151,GO:0001501,GO:0001655,GO:0001701,GO:0001756,GO:0001822,GO:0001824,GO:0001825,GO:0001826,GO:0003002,GO:0003674,GO:0003779,GO:0005102,GO:0005112,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005840,GO:0005856,GO:0005884,GO:0005938,GO:0006950,GO:0006970,GO:0006996,GO:0007010,GO:0007015,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007275,GO:0007346,GO:0007389,GO:0008064,GO:0008092,GO:0008150,GO:0008154,GO:0009553,GO:0009628,GO:0009653,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009892,GO:0009952,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010466,GO:0010564,GO:0010605,GO:0010638,GO:0010639,GO:0010646,GO:0010647,GO:0010648,GO:0010941,GO:0010948,GO:0010951,GO:0015629,GO:0016043,GO:0019222,GO:0022411,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030029,GO:0030036,GO:0030042,GO:0030111,GO:0030154,GO:0030162,GO:0030177,GO:0030479,GO:0030832,GO:0030833,GO:0030834,GO:0030835,GO:0030836,GO:0030837,GO:0030863,GO:0030864,GO:0031323,GO:0031324,GO:0031333,GO:0031461,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032271,GO:0032272,GO:0032465,GO:0032466,GO:0032501,GO:0032502,GO:0032535,GO:0032956,GO:0032970,GO:0032984,GO:0032991,GO:0033043,GO:0034622,GO:0035282,GO:0042254,GO:0042255,GO:0042273,GO:0042592,GO:0042641,GO:0042643,GO:0042981,GO:0043009,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043154,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043242,GO:0043243,GO:0043244,GO:0043254,GO:0043281,GO:0043624,GO:0043933,GO:0044085,GO:0044087,GO:0044092,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0044877,GO:0045786,GO:0045861,GO:0045930,GO:0048229,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048646,GO:0048705,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051015,GO:0051016,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051261,GO:0051302,GO:0051336,GO:0051346,GO:0051493,GO:0051494,GO:0051495,GO:0051693,GO:0051716,GO:0051726,GO:0051782,GO:0052547,GO:0052548,GO:0060255,GO:0060429,GO:0060548,GO:0060828,GO:0061053,GO:0061484,GO:0061645,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070925,GO:0071826,GO:0071840,GO:0071944,GO:0072001,GO:0080008,GO:0080090,GO:0090066,GO:0090263,GO:0097435,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:0110053,GO:1901879,GO:1901880,GO:1901881,GO:1902494,GO:1902903,GO:1902904,GO:1902905,GO:1990234,GO:1990904,GO:2000116,GO:2000117,GO:2001233,GO:2001234,GO:2001267,GO:2001268
Exons4
EggNOG free text desc.ribosomal large subunit assembly
EggNOG OGsKOG0271@1,KOG0271@2759
Cds size786
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko03036,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842435.7650661-CDS-E_fasciculatus_S2_contig7737:623..8351696842435.7650661-CDS-E_fasciculatus_S2_contig7737:623..835Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7737 624..835 +
1696842435.7775352-CDS-E_fasciculatus_S2_contig7737:1016..13491696842435.7775352-CDS-E_fasciculatus_S2_contig7737:1016..1349Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7737 1017..1349 +
1696842435.7885706-CDS-E_fasciculatus_S2_contig7737:1454..15261696842435.7885706-CDS-E_fasciculatus_S2_contig7737:1454..1526Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7737 1455..1526 +
1696842435.8068404-CDS-E_fasciculatus_S2_contig7737:1594..17631696842435.8068404-CDS-E_fasciculatus_S2_contig7737:1594..1763Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7737 1595..1763 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7737.15902.1prot_E_fasciculatus_S2_contig7737.15902.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7737 624..1763 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7737.15902.1

>prot_E_fasciculatus_S2_contig7737.15902.1 ID=prot_E_fasciculatus_S2_contig7737.15902.1|Name=mRNA_E_fasciculatus_S2_contig7737.15902.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=262bp
VWNVEGEGRKLGILVRTLVGHGHRVNTLALSCEAALRTGPFGKEECALKA
VSKFTAEEAQAVALERYNLARGGEPERLVSGSDDFTLFLWNPVDGKKPLA
RLTGHQQPVNHLAFSPDGRRFASASFDKKVKVWDGRTGTFLATLNGHVSA
VYQVAWSADSRLLVSASKDSTVKLWEMVALKSWFGLIVAVQQRCNPLWAC
HSNISSETKHAHSHPTQRRLHLRAKATLPGHADEVYALDWSPDGSAVASG
SKDRTIKIWAH*
back to top

mRNA from alignment at E_fasciculatus_S2_contig7737:624..1763+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7737.15902.1 ID=mRNA_E_fasciculatus_S2_contig7737.15902.1|Name=mRNA_E_fasciculatus_S2_contig7737.15902.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1140bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7737:624..1763+ (Ectocarpus fasciculatus EfasUO2)
GTGTGGAATGTTGAGGGTGAGGGCCGAAAGCTGGGAATTTTGGTTCGAAC GCTCGTTGGGCACGGCCATCGGGTCAACACCTTGGCCCTCAGCTGCGAGG CGGCACTGCGGACGGGTCCTTTCGGAAAGGAGGAGTGCGCGCTCAAGGCG GTGTCCAAGTTTACAGCAGAAGAGGCTCAAGCCGTCGCTCTCGAACGCTA CAATCTGGCAAGGTAAAGTGAAGAATCGCCTCGAGTGTTTTCGTTAGGCA TCATGTTCTTCAAATATATCTTGAAACCTTATGCCAGTTTTTCAAGCATT GGTCAAACGTAAACGTGTTCACAGGGTTACTTCCTACTACAGAATCCTTG AGAAGATGTTCGCTCTCGTAATCCATTGACCTTTGGCTATCAGGGGCGGG GAACCCGAGCGATTGGTATCAGGCTCGGACGACTTTACGCTCTTCCTCTG GAATCCAGTTGACGGCAAGAAGCCGCTGGCGCGCCTGACTGGCCACCAGC AACCGGTGAATCACCTGGCCTTCAGCCCGGACGGACGACGTTTCGCAAGC GCCTCGTTTGATAAGAAGGTCAAGGTTTGGGACGGCCGCACGGGCACGTT TCTCGCGACGCTCAACGGGCACGTGAGCGCGGTGTACCAGGTGGCGTGGT CTGCAGACAGCCGGCTCCTGGTTAGCGCCTCGAAGGACAGCACAGTCAAG CTATGGGAAATGGTCGCACTGAAGAGGTAAAAACGTTAACCCAGAGTATT GTGCGCTGAAAGAACCGAGGCTTGAACCGATTTTCTCAGCAGCGATTGGT GTCCTTCGATTGACGCTCCTGCCCGTCTGAGCTGGTTCGGGCTCATAGTC GCCGTGCAGCAACGCTGTAACCCACTTTGGGCATGCCACTCCAATATTAG TAGGTTGAGTATGGCGTGTTTTGCTTAATGTCTTGATGTGGGTCGTGGCA CTCGAGCACATATGCTGTCAGTGAAACAAAACACGCACACAGTCACCCCA CTCAACGCCGATTGCACCTCAGGGCGAAGGCGACTCTTCCAGGGCACGCC GACGAAGTGTATGCTCTCGACTGGTCTCCCGACGGATCTGCCGTTGCCTC CGGCAGCAAGGACCGGACTATCAAAATTTGGGCGCACTGA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7737:624..1763+

>mRNA_E_fasciculatus_S2_contig7737.15902.1 ID=mRNA_E_fasciculatus_S2_contig7737.15902.1|Name=mRNA_E_fasciculatus_S2_contig7737.15902.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=786bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7737:624..1763+ (Ectocarpus fasciculatus EfasUO2)
GTGTGGAATGTTGAGGGTGAGGGCCGAAAGCTGGGAATTTTGGTTCGAAC
GCTCGTTGGGCACGGCCATCGGGTCAACACCTTGGCCCTCAGCTGCGAGG
CGGCACTGCGGACGGGTCCTTTCGGAAAGGAGGAGTGCGCGCTCAAGGCG
GTGTCCAAGTTTACAGCAGAAGAGGCTCAAGCCGTCGCTCTCGAACGCTA
CAATCTGGCAAGGGGCGGGGAACCCGAGCGATTGGTATCAGGCTCGGACG
ACTTTACGCTCTTCCTCTGGAATCCAGTTGACGGCAAGAAGCCGCTGGCG
CGCCTGACTGGCCACCAGCAACCGGTGAATCACCTGGCCTTCAGCCCGGA
CGGACGACGTTTCGCAAGCGCCTCGTTTGATAAGAAGGTCAAGGTTTGGG
ACGGCCGCACGGGCACGTTTCTCGCGACGCTCAACGGGCACGTGAGCGCG
GTGTACCAGGTGGCGTGGTCTGCAGACAGCCGGCTCCTGGTTAGCGCCTC
GAAGGACAGCACAGTCAAGCTATGGGAAATGGTCGCACTGAAGAGCTGGT
TCGGGCTCATAGTCGCCGTGCAGCAACGCTGTAACCCACTTTGGGCATGC
CACTCCAATATTAGTAGTGAAACAAAACACGCACACAGTCACCCCACTCA
ACGCCGATTGCACCTCAGGGCGAAGGCGACTCTTCCAGGGCACGCCGACG
AAGTGTATGCTCTCGACTGGTCTCCCGACGGATCTGCCGTTGCCTCCGGC
AGCAAGGACCGGACTATCAAAATTTGGGCGCACTGA
back to top