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Homology
BLAST of mRNA_E_fasciculatus_S2_contig773.15895.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSI5_ECTSI) HSP 1 Score: 385 bits (989), Expect = 2.690e-132 Identity = 224/277 (80.87%), Postives = 234/277 (84.48%), Query Frame = 3
Query: 69 SFIRLAAVLAACLPVRGLISNSAGGGGHRPQQGSRQVRTPLRAIAGASADQVREALITSEAFKDLVERLEERSRQEAGTTATSTPADTSHEQHAFTAAPDRKHAAEHGGGSSDHAKQASYVWKRNSEKLDGLRTAVLESPKAREMREAFKTDSGNTINRPNGSTPAAPPSTAPA---------------LHTEQQDAVEQQLRAVEPRSTAAADAAVADGEALLPTEPQEVEEEGKGRKRFRWIGRVASRVSNVGKRVRGRVTRIGAKETTSGEEEH 854
SF+RLAAVLAACLPVRGLISNSAGGG HR QQGSRQ RTP RAIAGASAD+VREALITSEAFKDLVERLE+RSRQEAG TATSTP DT HEQHAFTAAPDRK AAEHGGGS+DHAKQA++ KRNSEKL GLRTAVLESPKAREMREAFKT++GN I RPNGSTP PPSTAPA L TEQQ VE+QLRA E STAAA VADGEALLPTEP EVEE GKGRKRFRWIGRVAS VSNVGKRVRGRVTRIGAK+TT GEEEH
Sbjct: 2 SFLRLAAVLAACLPVRGLISNSAGGGAHRLQQGSRQARTPRRAIAGASADEVREALITSEAFKDLVERLEDRSRQEAGATATSTPVDTWHEQHAFTAAPDRKDAAEHGGGSNDHAKQANHARKRNSEKLAGLRTAVLESPKAREMREAFKTNNGNAIGRPNGSTPPTPPSTAPASASTGDVAAAISAPALGTEQQGTVEKQLRAEEHSSTAAA--VVADGEALLPTEPLEVEE-GKGRKRFRWIGRVASSVSNVGKRVRGRVTRIGAKDTTPGEEEH 275
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 894 |
| Hectar predicted targeting category | signal peptide |
| Exons | 2 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-11_003840.1 |
| Cds size | 801 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842435.1882358-UTR-E_fasciculatus_S2_contig773:21553..21615 | 1696842435.1882358-UTR-E_fasciculatus_S2_contig773:21553..21615 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig773 21554..21615 + |
| 1696842435.2209294-UTR-E_fasciculatus_S2_contig773:24213..24244 | 1696842435.2209294-UTR-E_fasciculatus_S2_contig773:24213..24244 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig773 24214..24244 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842435.2019439-CDS-E_fasciculatus_S2_contig773:21615..22035 | 1696842435.2019439-CDS-E_fasciculatus_S2_contig773:21615..22035 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig773 21616..22035 + |
| 1696842435.2114842-CDS-E_fasciculatus_S2_contig773:23832..24213 | 1696842435.2114842-CDS-E_fasciculatus_S2_contig773:23832..24213 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig773 23833..24213 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig773.15895.1 >prot_E_fasciculatus_S2_contig773.15895.1 ID=prot_E_fasciculatus_S2_contig773.15895.1|Name=mRNA_E_fasciculatus_S2_contig773.15895.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=267bp
MASFIRLAAVLAACLPVRGLISNSAGGGGHRPQQGSRQVRTPLRAIAGAS
ADQVREALITSEAFKDLVERLEERSRQEAGTTATSTPADTSHEQHAFTAA
PDRKHAAEHGGGSSDHAKQASYVWKRNSEKLDGLRTAVLESPKAREMREA
FKTDSGNTINRPNGSTPAAPPSTAPALHTEQQDAVEQQLRAVEPRSTAAA
DAAVADGEALLPTEPQEVEEEGKGRKRFRWIGRVASRVSNVGKRVRGRVT
RIGAKETTSGEEEHSP* back to topmRNA from alignment at E_fasciculatus_S2_contig773:21554..24244+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig773.15895.1 ID=mRNA_E_fasciculatus_S2_contig773.15895.1|Name=mRNA_E_fasciculatus_S2_contig773.15895.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2691bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig773:21554..24244+ (Ectocarpus fasciculatus EfasUO2)
CGGGATGCTGTGGTGATGTGGTGATAAACGCGACGACAGACACCTTCTGA
CGACGGAGCTTCATGGCGAGCTTCATACGACTGGCAGCTGTGCTTGCAGC
CTGCCTGCCTGTGCGAGGGTTGATATCAAATTCTGCTGGTGGTGGTGGTC
ATAGACCGCAGCAAGGTAGCAGGCAGGTGCGAACCCCACTCCGCGCTATC
GCTGGCGCAAGCGCGGATCAAGTCCGAGAGGCTCTCATCACCAGCGAAGC
TTTCAAGGACCTGGTTGAGAGGCTTGAAGAGAGATCACGCCAAGAGGCTG
GCACTACGGCAACATCCACTCCTGCCGATACTTCGCACGAGCAGCACGCG
TTTACGGCGGCGCCAGATCGAAAGCATGCTGCGGAACACGGAGGAGGCAG
CAGCGATCACGCGAAGCAGGCGAGCTACGTGTGGAAGAGGAACTCGGAGA
AGCTCGATGGTTTGAGGACGGCTGTACTCGAGGTAGAAAACCCGGTGTGT
ACCTGCGTGTTCGACGTGTTCGGTGTAGTGTTTACAACAGAATTGGAGCT
GTGAGTGATTTTCATGGGTGTTTTGTGCATGATGGCAGCGGTGCAACCGC
TGACGATCTACTCTGCAAGTCTAGTTACGCTGATGATCTACACATTTTAT
CATTTTATCGACCAAAAAAAACATCCGAAACGATCCTAGCAGACGACCAA
ACCACAACAATCACGACAATCACAACATTGGCTGCTGCACATTGATGCAC
ACCCTCGCACGTACAACAGTAGTGATCCCTGTTTAAGGCCGCAACGTGCA
AAAGGATTTGACCGCGGCCTCATGACGGGCAAGCGGCATTTGTCCCAGAG
CTCAGGATAAGAGGCAATCATATGTTCTGGTTCTGTGTAACGCGATTTCA
CCGGCCACGTGCACGGCGTCCTGCCTTCCAGCGCGCCACACTCAGGCGTA
CGCACATGTTAGAAACTCTTCTTCTCCGAGGCTCGCGCCGCAACGGCCGC
GGAATTCTTAGTGGGGTCCGGCTTTTCCCGCTGAAACTGCCCCATACAGG
ACCACGCTCGTATTTTTTTTCTTTATTGGGCGGGACGTAGGCTTCTGTAG
TTCATTATATGAAAATGCGTTCGTTGTTGTTATTGTTTTTGTTTTTGTTT
TTCCTAATATAACACAACGAGTCGATCTCTATCAGAGAAAAGAGTCAAAG
ATAGATTAGCAATGGAATCATAGCGTCAGAGAAAACTACCTGTTTGTTTT
ACCACATGCGTTGGCTGAGATCTTAGGAGATGTCAGTACTTCCTGGGTTA
AACACAAACCTGAGCCGCCGCGATCAGCCTATACATGTAGGCACTCCAAA
GGCAGTGAAACGTACGGCATTATGAGCAACTCTCAAACCTTTTGATCCAA
ACAATGGCGACGTTGGGCATTCCACTACGGTATATACAGTAGTGCGGACG
CCCGTTGTACACAGCTACAGCTCCACAGTCGCACCATCCACCCCACGAGC
TAGGTTTCAACAGCAATGAATTGCAGCGGGCAATGAAGACGCCTGAATGC
GAAAATTGCCTGGAATTTCCATGCCCTGATCTCGTCGTCTTCGTCCATGC
TATTGTTGGTCCAGAAGACCGAGCTCGTTGTTACTGGACACATGATTTTT
CTAGGCAGATGATGATATTCGTCAGTACAATAGTGTGAGTAACCTCGCGT
GTAAAACAACAAAACAACTGAACCAACACCACAAACGATGACGGCTTCGC
GAAGGAAACGTGAAAATCGCGGTGAAAATCAAACTTGCCCAAACACGTGG
TGTTTGTCCTTGTGTGCATCCGGTGCCTCAACCTTGGGCACGCTTGTGAG
AAACTAGTCGCGTGGAGACTAAAGTAGTCGATTTCGCCAATCGCTGACTG
CTGGACAAGGTCTCCGAGACATGGGATGCTGTCCTGTTTGCAACCGCTGC
TGCTTGTCTATATCGCTCTCTTTTGACATCTATTTTATTCTCGAAGACCC
TACAGGAGGTCTTGCCCTCCACGTGCCTTCAGTACATGCCAGCATATTGA
ACCCTCCGTTGAGATGAAAACATTCCCTTTGAAGTCGCCCAAGGTACGAG
TGTTTTACGGTACTACTGCTGTAGTGTTTACGGTACTACTGTAGTTGAGC
ACACGGAAACAGTTTTCCACCACATGCGCGGCAAGTACGTATACAGAATG
GTTCGACGCACATATGCAACCTTCGTTTCCAGAATCTGAACTGTGCGCTC
GTGCTGTTGCCAATATCTGCCGTTCACAGAGCCCAAAAGCACGCGAAATG
CGGGAAGCGTTCAAAACGGACAGCGGGAATACCATCAACCGACCAAACGG
CTCGACGCCCGCGGCTCCGCCATCAACCGCGCCCGCTTTGCACACTGAAC
AACAAGACGCAGTCGAGCAGCAGCTCCGGGCGGTAGAACCCAGATCTACC
GCTGCTGCTGATGCTGCTGTGGCCGACGGGGAGGCACTGCTTCCAACGGA
GCCGCAGGAGGTAGAGGAGGAGGGGAAGGGTCGGAAGCGGTTCCGATGGA
TTGGACGCGTAGCGTCGAGGGTATCGAACGTGGGAAAGAGGGTGAGGGGG
CGGGTGACGCGAATCGGGGCGAAAGAAACAACATCGGGAGAAGAGGAGCA
CAGTCCCTGAAGAACAGGCGACGAAATCCGACTGAGTATGG back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig773:21554..24244+ >mRNA_E_fasciculatus_S2_contig773.15895.1 ID=mRNA_E_fasciculatus_S2_contig773.15895.1|Name=mRNA_E_fasciculatus_S2_contig773.15895.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=801bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig773:21554..24244+ (Ectocarpus fasciculatus EfasUO2)
ATGGCGAGCTTCATACGACTGGCAGCTGTGCTTGCAGCCTGCCTGCCTGT
GCGAGGGTTGATATCAAATTCTGCTGGTGGTGGTGGTCATAGACCGCAGC
AAGGTAGCAGGCAGGTGCGAACCCCACTCCGCGCTATCGCTGGCGCAAGC
GCGGATCAAGTCCGAGAGGCTCTCATCACCAGCGAAGCTTTCAAGGACCT
GGTTGAGAGGCTTGAAGAGAGATCACGCCAAGAGGCTGGCACTACGGCAA
CATCCACTCCTGCCGATACTTCGCACGAGCAGCACGCGTTTACGGCGGCG
CCAGATCGAAAGCATGCTGCGGAACACGGAGGAGGCAGCAGCGATCACGC
GAAGCAGGCGAGCTACGTGTGGAAGAGGAACTCGGAGAAGCTCGATGGTT
TGAGGACGGCTGTACTCGAGAGCCCAAAAGCACGCGAAATGCGGGAAGCG
TTCAAAACGGACAGCGGGAATACCATCAACCGACCAAACGGCTCGACGCC
CGCGGCTCCGCCATCAACCGCGCCCGCTTTGCACACTGAACAACAAGACG
CAGTCGAGCAGCAGCTCCGGGCGGTAGAACCCAGATCTACCGCTGCTGCT
GATGCTGCTGTGGCCGACGGGGAGGCACTGCTTCCAACGGAGCCGCAGGA
GGTAGAGGAGGAGGGGAAGGGTCGGAAGCGGTTCCGATGGATTGGACGCG
TAGCGTCGAGGGTATCGAACGTGGGAAAGAGGGTGAGGGGGCGGGTGACG
CGAATCGGGGCGAAAGAAACAACATCGGGAGAAGAGGAGCACAGTCCCTG
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