mRNA_E_fasciculatus_S2_contig7729.15892.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7729.15892.1
Unique NamemRNA_E_fasciculatus_S2_contig7729.15892.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7729.15892.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUW0_ECTSI)

HSP 1 Score: 568 bits (1465), Expect = 5.880e-196
Identity = 409/566 (72.26%), Postives = 429/566 (75.80%), Query Frame = 1 
Query:    1 VMAELQGLKADIYNLNRSLDGSTITFAMGKGGLQRSKTSEKASLGTDLQSSGLSATAHPSSPYGTTRRTEGHDHRHARAQGEPDHDLGHSSGGESDCKLEICFPPXXXXXXXXXXXSGFGSAAAAVTCSRGVRRDYGGGGGVKDVGQLVQRVEASTRAVSREKEHIAKILRIEKEKTARLQEALWQEGGTKREWEMLTQQASGLLKQRLESTERIRNRQKELIRELQAVEADIAFANAGNVAGMVSTDPLPNLSPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTERDHIVDERSGRRPRGGASDGAR-----------RSPPTRTQSVISAGRTAWRAAAVESKDGGG-----ARPGRAAASASVRTISRAAAVRAERPRRSGRLADGATKTSISAVGARKSSEAAVASKAKRAQTGRMRATSSVIDSSSADPKAR-SEVDRISKSATTATAQSRHXXXXXXXXXXXXXXXXVLRRQAM-RAKVPSGGTFGAPTAASAGKIRTTPRRAVTSSGGRVGATKRAGDD--RRPLVAQAQKETSAGGGG*LLLEATTTALGD 1638
            VMAEL+GLKADIY LNRSLDGSTITFAMGKG L+RSKT+ +AS+ TDLQS GLSAT HPSSP G T RTE HDHRHARAQG PDHDLGHSSGG                            AAAA +CS GVRRDYGGG  V+DVG+LV+RVEASTRAVSREKEHIAKILRIEKEKTARLQEALWQEGGTKREWEMLTQ AS LLKQRLESTERIRNRQKELIRELQAVEADIAFANAGN+AGMVSTDPLPNLSPP  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX   DTER H VDER GRR RGGASD AR           RSPPT T+S  S    A  AAAVE +D         R GRAAASASVRT+ RAA VR ERPRRSG  ADGATK+ ISA GARKSSE AVASKA+R QTGR   +SS+IDSSSAD KAR +EVDR SKSATT TAQSRH                VLRRQA  + KVPSG TFGAPTAASAGKIRTTPRR V S GG V ATKRAGD    RPLVAQ  K+ S GGGG LLLEATTTAL D
Sbjct:   44 VMAELRGLKADIYTLNRSLDGSTITFAMGKGDLERSKTTAEASIRTDLQSLGLSATPHPSSPCGRTGRTEVHDHRHARAQGGPDHDLGHSSGG----------------------------AAAAASCSSGVRRDYGGG--VRDVGELVRRVEASTRAVSREKEHIAKILRIEKEKTARLQEALWQEGGTKREWEMLTQ-ASSLLKQRLESTERIRNRQKELIRELQAVEADIAFANAGNMAGMVSTDPLPNLSPPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGN-DTERHHAVDERYGRRSRGGASDRARTPLGGKHGEQRRSPPTGTKSAKSNDFPAGCAAAVELEDXXXXXXXXTRLGRAAASASVRTVGRAATVRPERPRRSGGPADGATKSGISATGARKSSEGAVASKARRTQTGRT--SSSIIDSSSADTKARRAEVDRKSKSATTTTAQSRHRAATSSTPAAAPSRNRVLRRQASTKTKVPSGATFGAPTAASAGKIRTTPRRPVVSPGGHVRATKRAGDGCIPRPLVAQTNKKASRGGGGQLLLEATTTALAD 575
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7729.15892.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized5.880e-19672.26protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7729contigE_fasciculatus_S2_contig7729:2333..5526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1638
Hectar predicted targeting categoryother localisation
Exons6
Cds size1599
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7729.15892.1prot_E_fasciculatus_S2_contig7729.15892.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7729 2369..5523 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842434.7532618-UTR-E_fasciculatus_S2_contig7729:2332..23681696842434.7532618-UTR-E_fasciculatus_S2_contig7729:2332..2368Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7729 2333..2368 -
1696842434.8132606-UTR-E_fasciculatus_S2_contig7729:5523..55261696842434.8132606-UTR-E_fasciculatus_S2_contig7729:5523..5526Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7729 5524..5526 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842434.7629027-CDS-E_fasciculatus_S2_contig7729:2368..24241696842434.7629027-CDS-E_fasciculatus_S2_contig7729:2368..2424Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7729 2369..2424 -
1696842434.7718177-CDS-E_fasciculatus_S2_contig7729:2440..33261696842434.7718177-CDS-E_fasciculatus_S2_contig7729:2440..3326Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7729 2441..3326 -
1696842434.7806225-CDS-E_fasciculatus_S2_contig7729:3612..36751696842434.7806225-CDS-E_fasciculatus_S2_contig7729:3612..3675Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7729 3613..3675 -
1696842434.7889757-CDS-E_fasciculatus_S2_contig7729:4001..40941696842434.7889757-CDS-E_fasciculatus_S2_contig7729:4001..4094Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7729 4002..4094 -
1696842434.7972364-CDS-E_fasciculatus_S2_contig7729:4459..48451696842434.7972364-CDS-E_fasciculatus_S2_contig7729:4459..4845Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7729 4460..4845 -
1696842434.804989-CDS-E_fasciculatus_S2_contig7729:5408..55231696842434.804989-CDS-E_fasciculatus_S2_contig7729:5408..5523Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7729 5409..5523 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7729.15892.1

>prot_E_fasciculatus_S2_contig7729.15892.1 ID=prot_E_fasciculatus_S2_contig7729.15892.1|Name=mRNA_E_fasciculatus_S2_contig7729.15892.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=533bp
MAELQGLKADIYNLNRSLDGSTITFAMGKGGLQRSKTSEKASLGTDLQSS
GLSATAHPSSPYGTTRRTEGHDHRHARAQGEPDHDLGHSSGGESDCKLEI
CFPPPPPSQQSHSRASGFGSAAAAVTCSRGVRRDYGGGGGVKDVGQLVQR
VEASTRAVSREKEHIAKILRIEKEKTARLQEALWQEGGTKREWEMLTQQA
SGLLKQRLESTERIRNRQKELIRELQAVEADIAFANAGNVAGMVSTDPLP
NLSPPPLPPPPPPPPALPPTARRRKASSSPLLAHHRDHHDTERDHIVDER
SGRRPRGGASDGARRSPPTRTQSVISAGRTAWRAAAVESKDGGGARPGRA
AASASVRTISRAAAVRAERPRRSGRLADGATKTSISAVGARKSSEAAVAS
KAKRAQTGRMRATSSVIDSSSADPKARSEVDRISKSATTATAQSRHRVTT
SSTPAAAPSRNRVLRRQAMRAKVPSGGTFGAPTAASAGKIRTTPRRAVTS
SGGRVGATKRAGDDRRPLVAQAQKETSAGGGG*
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mRNA from alignment at E_fasciculatus_S2_contig7729:2333..5526-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7729.15892.1 ID=mRNA_E_fasciculatus_S2_contig7729.15892.1|Name=mRNA_E_fasciculatus_S2_contig7729.15892.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3194bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7729:2333..5526- (Ectocarpus fasciculatus EfasUO2)
GTGATGGCTGAGCTTCAAGGGCTCAAGGCTGATATATACAACCTCAACAG
GAGTCTGGACGGCAGCACCATCACGTTCGCCATGGGAAAGGGAGGCCTAC
AAAGGAGCAAGACTTCAGGTGCGGGCATGGTGGCAGTCTGTGTCGCGTGT
GCACGCCGATTCCCACAACAACAGTTGGACTTGAGAAAATTACCTCAGGT
TTCCACCTCTTTGTTTAGATGGGATTCGACACGAACTTGTGGGTAGCTGC
TCAGACTTGTCCGTTATCGATTCGGGTATAGTAGGTGTTCAGTACTTTTG
GGGGAAATTGTACGAACCCGCCACAACGAGCCGCGCTCGAAAAGCCCGTC
CGACCCCTACATGTGTTTGGTGACGCCGTGTGGAAAAGGCAAGCCGACCC
GACCATGCAACCCGAATTCTAGACCAAGCAACGTTTCCAACGAAAAGCCT
GGCAATCCTGTAGAGAGATGCATAACATAGGTAATCACGCTGTGCTGAAA
CGGGGCTGATCATGCTATTCCAGCTGATCTCCGTGGTCAATACAAACACG
TACTCACCCGACTCGCTGGAATTGCTCCACTTTACGTTGCATGTGTGGCG
CCCCACGCATCAGCTTAACGCGCATAATCCAAACCGCCTGCCTGAACCGC
TACTTTCTTCGCTGCTTTTTGCTCCTCGCAGAAAAAGCGTCGCTTGGGAC
GGATCTCCAAAGCTCGGGCCTGTCCGCAACGGCCCACCCTTCTTCCCCTT
ACGGTACAACTAGACGAACCGAGGGCCACGATCACCGCCACGCCCGTGCC
CAGGGTGAACCCGACCATGACCTAGGTCACTCGAGCGGCGGTGAGAGCGA
CTGCAAGTTGGAGATATGTTTCCCGCCGCCTCCTCCGTCACAGCAGTCTC
ACTCGCGTGCGTCCGGCTTTGGAAGCGCTGCTGCGGCCGTGACTTGCAGC
CGCGGTGTTCGGAGGGACTACGGTGGTGGTGGCGGCGTGAAGGATGTCGG
GCAGCTGGTGCAGCGGGTGGAGGCTTCGACGAGAGCCGTGTCGCGAGAGA
AAGAACACATTGCCAAGGTGCGGTGCCTGCCGTCCTGCCAAGCGTGACCG
CTGCACTCGGTCACGTCGACACCGTTAGGATGGATGGCGCAGCGACCCCT
TCCTTCGGTGATTTCGTTGCAATTCGATCCGGACGTGTGTTGTCGCGTGC
GATAGTGGTTACGAAAGGAGAGAAAAAGACCCACGTAGTAAAACCAGCAC
GCCACCCCCCCCCACCCCATGCGAGGTCTACGGTCTAACGAGTACGGCAT
GCATGATACTGAGTACACCCCCCTGAGTACACCCCCCCACGCGCGCGCGC
GATTTCTGTCGCGAGCTTGATCATTAGGGCGTTTTCCTCGATGGTTTCCT
TGCTGTTGGCCCCATGCTCCTGCTCTGTGCAGATCCTGCGAATAGAGAAA
GAAAAGACGGCCCGATTACAAGAAGCTCTCTGGCAGGAAGGGGGAACGAA
GCGCGAGTGGGAGATGCTCACACAGGTGAAACCCCAAGCATCCCCCTTGA
CCCCCCAACGCCCTGGTCGGTACAGCACAACCTGATCCATCCCAGGCTTG
TAGAGATGGAGGGTCGATGATCCGAAGGATGCCGTCATGCGCGAAGTTGG
GTGCTTCTCAGTCCCAGCGTCAACTACCCCACCGATTTTCCAAACAATGG
GGCCGTTTCTAACAGTGCCTTGCAGGCGATCTGTTACTTGCGGTACGCCG
TGTCCGCACCACCTCCACCTCCACCACCACCACAATACTAAAAGCACGCG
TGTGATGCACGACGTCCTGCACTCTGAAACGACCCGTACGATGCCCTTGA
GCAGGCGTCGGGTTTGCTCAAACAGCGGCTGGAATCGACGGAGCGAATCA
GGAACCGGCAAAAGGTACAGCAACGTCGCGGTTTTCCGTGTGTTCGTCGC
TTCTCCTCTCTCTACCGTCTCGCCTCTGCTAAGTTACCGATCTCACTGAG
AGATTAATTGCCGCTCCCACGAGTCCGACTTTTTTTTTCGCGTTGAAGGC
TTTTCTTGGCAAAGCCCGCCGATCGTCCACTTCCCACAGAACTTGTAGCA
CCACCAGGCGTCTGTGAGTTTGGAAGAACGGGCGTTTCTTGATCTTCGAC
AGCAGCCTAAACTGCCGGCGCGGTGGTGTGTGTCTTGGTTGTTTTTCCAG
GAGCTTATCCGAGAGTTGCAAGCCGTGGAGGCCGACATTGCCTTTGCCAA
CGCTGGGAACGTGGCGGGAATGGTTTCGACGGACCCCCTACCCAACCTGT
CGCCACCACCACTACCACCACCACCACCACCACCACCGGCGCTACCGCCC
ACCGCCCGACGAAGGAAGGCTTCGTCCTCACCTCTGCTGGCACATCACCG
AGACCATCATGACACAGAACGCGACCATATCGTTGACGAGAGAAGCGGTA
GGCGGCCGAGAGGGGGTGCGTCGGATGGGGCTAGGAGGTCGCCACCCACC
AGGACCCAGTCGGTCATCTCTGCTGGGCGAACTGCCTGGCGTGCTGCTGC
GGTGGAATCGAAGGACGGCGGTGGGGCTAGGCCAGGACGAGCAGCGGCGT
CCGCATCAGTCAGGACAATTAGTAGGGCCGCCGCCGTGCGAGCGGAGCGG
CCCCGGCGGAGCGGCCGCCTGGCCGACGGTGCCACCAAGACCAGCATCAG
CGCCGTGGGGGCAAGGAAATCGAGCGAGGCAGCGGTAGCAAGCAAGGCCA
AGAGAGCACAAACGGGACGTATGCGTGCCACTAGCAGCGTCATAGATTCT
TCCTCGGCAGACCCGAAAGCGAGATCGGAGGTCGACCGCATATCGAAATC
GGCAACAACGGCAACGGCCCAGTCGCGGCATAGGGTCACCACCTCTTCAA
CGCCAGCGGCGGCACCGTCTCGAAACCGCGTGCTTCGCCGACAGGCAATG
AGGGCAAAGGTTCCTTCAGGAGGAACGTTCGGGGCGCCGACGGCAGCGAG
CGCTGGCAAGATCCGAACAACACCACGAAGAGCGGTGACATCGTCGGGGG
GTCGCGTCGGTGCCACCAAGCGAGCTGGCGATGATCGTGTCCGGTCTTCA
AGGCCGTCCGCTTGTCGCCCAGGCCCAAAAAGAAACGTCCGCGGGCGGCG
GCGGGTAGCTTCTTCTCGAGGCGACGACAACCGCACTCGGTGAT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7729:2333..5526-

>mRNA_E_fasciculatus_S2_contig7729.15892.1 ID=mRNA_E_fasciculatus_S2_contig7729.15892.1|Name=mRNA_E_fasciculatus_S2_contig7729.15892.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1599bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7729:2333..5526- (Ectocarpus fasciculatus EfasUO2)
ATGGCTGAGCTTCAAGGGCTCAAGGCTGATATATACAACCTCAACAGGAG
TCTGGACGGCAGCACCATCACGTTCGCCATGGGAAAGGGAGGCCTACAAA
GGAGCAAGACTTCAGAAAAAGCGTCGCTTGGGACGGATCTCCAAAGCTCG
GGCCTGTCCGCAACGGCCCACCCTTCTTCCCCTTACGGTACAACTAGACG
AACCGAGGGCCACGATCACCGCCACGCCCGTGCCCAGGGTGAACCCGACC
ATGACCTAGGTCACTCGAGCGGCGGTGAGAGCGACTGCAAGTTGGAGATA
TGTTTCCCGCCGCCTCCTCCGTCACAGCAGTCTCACTCGCGTGCGTCCGG
CTTTGGAAGCGCTGCTGCGGCCGTGACTTGCAGCCGCGGTGTTCGGAGGG
ACTACGGTGGTGGTGGCGGCGTGAAGGATGTCGGGCAGCTGGTGCAGCGG
GTGGAGGCTTCGACGAGAGCCGTGTCGCGAGAGAAAGAACACATTGCCAA
GATCCTGCGAATAGAGAAAGAAAAGACGGCCCGATTACAAGAAGCTCTCT
GGCAGGAAGGGGGAACGAAGCGCGAGTGGGAGATGCTCACACAGCAGGCG
TCGGGTTTGCTCAAACAGCGGCTGGAATCGACGGAGCGAATCAGGAACCG
GCAAAAGGAGCTTATCCGAGAGTTGCAAGCCGTGGAGGCCGACATTGCCT
TTGCCAACGCTGGGAACGTGGCGGGAATGGTTTCGACGGACCCCCTACCC
AACCTGTCGCCACCACCACTACCACCACCACCACCACCACCACCGGCGCT
ACCGCCCACCGCCCGACGAAGGAAGGCTTCGTCCTCACCTCTGCTGGCAC
ATCACCGAGACCATCATGACACAGAACGCGACCATATCGTTGACGAGAGA
AGCGGTAGGCGGCCGAGAGGGGGTGCGTCGGATGGGGCTAGGAGGTCGCC
ACCCACCAGGACCCAGTCGGTCATCTCTGCTGGGCGAACTGCCTGGCGTG
CTGCTGCGGTGGAATCGAAGGACGGCGGTGGGGCTAGGCCAGGACGAGCA
GCGGCGTCCGCATCAGTCAGGACAATTAGTAGGGCCGCCGCCGTGCGAGC
GGAGCGGCCCCGGCGGAGCGGCCGCCTGGCCGACGGTGCCACCAAGACCA
GCATCAGCGCCGTGGGGGCAAGGAAATCGAGCGAGGCAGCGGTAGCAAGC
AAGGCCAAGAGAGCACAAACGGGACGTATGCGTGCCACTAGCAGCGTCAT
AGATTCTTCCTCGGCAGACCCGAAAGCGAGATCGGAGGTCGACCGCATAT
CGAAATCGGCAACAACGGCAACGGCCCAGTCGCGGCATAGGGTCACCACC
TCTTCAACGCCAGCGGCGGCACCGTCTCGAAACCGCGTGCTTCGCCGACA
GGCAATGAGGGCAAAGGTTCCTTCAGGAGGAACGTTCGGGGCGCCGACGG
CAGCGAGCGCTGGCAAGATCCGAACAACACCACGAAGAGCGGTGACATCG
TCGGGGGGTCGCGTCGGTGCCACCAAGCGAGCTGGCGATGATCGCCGTCC
GCTTGTCGCCCAGGCCCAAAAAGAAACGTCCGCGGGCGGCGGCGGGTAG
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