mRNA_E_fasciculatus_S2_contig7724.15890.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7724.15890.1
Unique NamemRNA_E_fasciculatus_S2_contig7724.15890.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7724.15890.1 vs.
Match: WW (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1M0_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 3.340e-19
Identity = 37/42 (88.10%), Postives = 40/42 (95.24%), Query Frame = 2 
Query:   20 ELDAPSTPSCKEWGEFWDEEVGASYYYNCVTGEALWVRPDGF 145
            +++ PSTPSCKEWGEFWDEEVGASYYYN VTGEALWVRPDGF
Sbjct:  226 DINPPSTPSCKEWGEFWDEEVGASYYYNSVTGEALWVRPDGF 267
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BLAST of mRNA_E_fasciculatus_S2_contig7724.15890.1 vs.
Match: Uncharacterized (protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XET1_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.820e-5
Identity = 24/44 (54.55%), Postives = 28/44 (63.64%), Query Frame = 2 
Query:   14 LLELDAPSTPSCKEWGEFWDEEVGASYYYNCVTGEALWVRPDGF 145
            + E DAP      EW E+WDE VGASY+YN  TGEA W  P G+
Sbjct: 1189 VAEEDAPV-----EWVEYWDENVGASYFYNVKTGEATWTTPVGY 1227
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BLAST of mRNA_E_fasciculatus_S2_contig7724.15890.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N0E1_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.130e-5
Identity = 20/31 (64.52%), Postives = 24/31 (77.42%), Query Frame = 2 
Query:   44 SCKEWGEFWDEEVGASYYYNCVTGEALWVRP 136
            S   W E+WD+EVGASYY+N +TGEA WV P
Sbjct:  215 SWAHWQEYWDQEVGASYYHNVMTGEASWVNP 245
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7724.15890.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
WW3.340e-1988.10domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized1.820e-554.55protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID... [more]
Hypothetical2.130e-564.52protein (Fragment) n=1 Tax=Odontella aurita TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7724contigE_fasciculatus_S2_contig7724:2313..2931 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size619
Hectar predicted targeting categoryother localisation
Exons1
Cds size486
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842434.596773-UTR-E_fasciculatus_S2_contig7724:2312..23661696842434.596773-UTR-E_fasciculatus_S2_contig7724:2312..2366Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7724 2313..2366 +
1696842434.6193411-UTR-E_fasciculatus_S2_contig7724:2852..29311696842434.6193411-UTR-E_fasciculatus_S2_contig7724:2852..2931Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7724 2853..2931 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842434.6073196-CDS-E_fasciculatus_S2_contig7724:2366..28521696842434.6073196-CDS-E_fasciculatus_S2_contig7724:2366..2852Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7724 2367..2852 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7724.15890.1prot_E_fasciculatus_S2_contig7724.15890.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7724 2367..2852 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7724.15890.1

>prot_E_fasciculatus_S2_contig7724.15890.1 ID=prot_E_fasciculatus_S2_contig7724.15890.1|Name=mRNA_E_fasciculatus_S2_contig7724.15890.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=162bp
MGGVLGRGGGGFVLLQLRHGRGAVGPPGRVLVLGFLFTVVGTRLGCECET
NAYAYEADTWCLRHDFRGARQQAHTSPPEGWHIENVFFSSNCAECRGRVF
LITAVFALGPLRGKTPRKRVCFSTFGALKSGVFPLVSCVGRLMLVEDDAR
IVPRGKCFILL*
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mRNA from alignment at E_fasciculatus_S2_contig7724:2313..2931+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7724.15890.1 ID=mRNA_E_fasciculatus_S2_contig7724.15890.1|Name=mRNA_E_fasciculatus_S2_contig7724.15890.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=619bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7724:2313..2931+ (Ectocarpus fasciculatus EfasUO2)
GGGAAAGGACACCCTTCTCGAACTGGACGCACCATCAACGCCCTCCTGCA
AGGAATGGGGGGAGTTTTGGGACGAGGAGGTGGGGGCTTCGTACTACTAC
AACTGCGTCACGGGAGAGGCGCTGTGGGTCCGCCCGGACGGGTTTTAGTT
TTGGGGTTTCTTTTTACTGTAGTCGGAACAAGATTAGGATGTGAATGCGA
AACCAACGCATATGCATATGAAGCCGATACCTGGTGCTTGCGCCACGATT
TTCGCGGCGCAAGACAACAGGCACACACCTCGCCACCAGAAGGGTGGCAC
ATCGAGAATGTCTTCTTCTCATCAAATTGCGCTGAGTGTAGAGGCAGGGT
GTTTCTGATCACTGCGGTTTTTGCCTTGGGCCCGCTGCGTGGGAAAACGC
CGCGTAAACGCGTGTGTTTCTCGACTTTTGGGGCCCTGAAATCTGGTGTC
TTCCCATTGGTCAGCTGCGTAGGGCGGTTGATGCTTGTTGAAGACGACGC
ACGTATTGTTCCACGGGGAAAGTGTTTCATATTGTTGTGAAAAAAAGTCC
GACCTAGTGCGTTGAAGAGGTACTAGGCCTACCCTTTCGCATGGACTAGG
CTCGACATCCAATGTGCTT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7724:2313..2931+

>mRNA_E_fasciculatus_S2_contig7724.15890.1 ID=mRNA_E_fasciculatus_S2_contig7724.15890.1|Name=mRNA_E_fasciculatus_S2_contig7724.15890.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=486bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7724:2313..2931+ (Ectocarpus fasciculatus EfasUO2)
ATGGGGGGAGTTTTGGGACGAGGAGGTGGGGGCTTCGTACTACTACAACT
GCGTCACGGGAGAGGCGCTGTGGGTCCGCCCGGACGGGTTTTAGTTTTGG
GGTTTCTTTTTACTGTAGTCGGAACAAGATTAGGATGTGAATGCGAAACC
AACGCATATGCATATGAAGCCGATACCTGGTGCTTGCGCCACGATTTTCG
CGGCGCAAGACAACAGGCACACACCTCGCCACCAGAAGGGTGGCACATCG
AGAATGTCTTCTTCTCATCAAATTGCGCTGAGTGTAGAGGCAGGGTGTTT
CTGATCACTGCGGTTTTTGCCTTGGGCCCGCTGCGTGGGAAAACGCCGCG
TAAACGCGTGTGTTTCTCGACTTTTGGGGCCCTGAAATCTGGTGTCTTCC
CATTGGTCAGCTGCGTAGGGCGGTTGATGCTTGTTGAAGACGACGCACGT
ATTGTTCCACGGGGAAAGTGTTTCATATTGTTGTGA
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