mRNA_E_fasciculatus_S2_contig771.15883.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig771.15883.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDJ1_ECTSI) HSP 1 Score: 566 bits (1458), Expect = 2.400e-178 Identity = 342/448 (76.34%), Postives = 390/448 (87.05%), Query Frame = 1
Query: 8365 RCRREAARTLQKYRRRLVLRRAYVLLRLAAVKVEASYRRWLAQRDSFQRRLAVRIIQVAARRFVFSSRRKRAANILQRAYRSVVRVRRCRTERKKILDAASVLRRAARAWVARRVVGRRREVQRRDRAAVTLQHTMWRHLWRRKQHRQHVAAALTLWKFMGGLSVTLSRLRKRRRSAAATRIQAVARRYISLVQTRAMLDMHRKQXXXXXXXXXACRGRRCRVHMGTIRVEQEKCYAXXXXXXXXXXXXXXXXXXXXXXXXHACAVKMQTFLLQQRRNARFVSRCERERERERGALVLQRAWRSRTIGQDVNTQDEPITTTEQRRSSPAASPRPKPRCTLDRSNVQLAVEALAKGMRRRGVLNPISAENLSDSLALGKDDPMLEIALRQGLSHLEVALARSTGTVSTSIGLKRMTAESAAVAREGVDEALRHSLEELEQCLLRQRPPD 9708
RCRREAA TLQKYRRRL LRRAYVLLR A+VKVEA+YRRW AQR+ FQRRLAV I+Q AARRFVF++RR+RAAN+LQ AYRS VRV+ CR ERKKILDAA+VL+R+ARAWVARRVVG+RR+V+R++RAA TLQ+ MWRHL RRK+HRQHVAAALTLWKFMGGLSVTLS +RKRR+SAAATRIQAVAR+YISLV+TRA+LDMHRK+XXXXXXXXXACRGRRCR+H+ T+ +EQ++C+ XXXXXXXXXXXXX ACAVK+Q FLLQQRR ARF SRCERERE+ GALVLQRAWR R IGQD TQDEP TT+EQRRSS A SPRP+P +DR+NVQLAVEALAKGMRRRGVL+PI A+NLSD+LALG+DDP+LE+ALRQGLS+LE ALARSTGTVST+ GLKRMT ES AV G+D +L HSLEELEQ LLR RP D
Sbjct: 5 RCRREAATTLQKYRRRLALRRAYVLLRSASVKVEANYRRWRAQRNCFQRRLAVGILQEAARRFVFNTRRRRAANLLQSAYRSSVRVKHCRKERKKILDAANVLQRSARAWVARRVVGQRRKVRRQNRAAATLQYAMWRHLLRRKKHRQHVAAALTLWKFMGGLSVTLSAIRKRRKSAAATRIQAVARQYISLVKTRAILDMHRKEXXXXXXXXXACRGRRCRIHLSTLLLEQDECHXXXXXXXXXXXXXXRVKTIQH----RACAVKIQIFLLQQRRKARFASRCEREREQ--GALVLQRAWRWRIIGQDAKTQDEPTTTSEQRRSSLATSPRPEPLRAVDRANVQLAVEALAKGMRRRGVLDPIIADNLSDTLALGQDDPVLEVALRQGLSNLEQALARSTGTVSTNTGLKRMTDESVAVLWGGMDASLPHSLEELEQGLLRLRPSD 446
BLAST of mRNA_E_fasciculatus_S2_contig771.15883.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2G6_9PHAE) HSP 1 Score: 522 bits (1345), Expect = 3.370e-163 Identity = 318/447 (71.14%), Postives = 360/447 (80.54%), Query Frame = 1
Query: 8368 CRREAARTLQKYRRRLVLRRAYVLLRLAAVKVEASYRRWLAQRDSFQRRLAVRIIQVAARRFVFSSRRKRAANILQRAYRSVVRVRRCRTERKKILDAASVLRRAARAWVARRVVGRRREVQRRDRAAVTLQHTMWRHLWRRKQHRQHVAAALTLWKFMGGLSVTLSRLRKRRRSAAATRIQAVARRYISLVQTRAMLDMHRKQXXXXXXXXXACRGRRCRVHMGTIRVEQEKCYAXXXXXXXXXXXXXXXXXXXXXXXXHACAVKMQTFLLQQRRNARFVSRCERERERERGALVLQRAWRSRTIGQDVNTQDEPITTTEQRRSSPAASPRPKPRCTLDRSNVQLAVEALAKGMRRRGVLNPISAENLSDSLALGKDDPMLEIALRQGLSHLEVALARSTGTVSTSIGLKRMTAESAAVAREGVDEALRHSLEELEQCLLRQRPPD 9708
CRREAA TLQKYRRRL LRRAYVLLR A+VKV A+YRRW QRD FQRRLAV I+Q A+RRFVF++RR+RAAN+LQ AYRS RV+ R ERKKILDAA+VL+R+ARAWVARRVVG RREVQRR+RAA LQH MWRHLWRRK+HRQHVAAALTLWKFMGGLSVTLSR+RKRR+S AATRIQAVAR+YISLV+TR +LDMHRK+ ACRGRR R H+ T++VE XXXXXXXXXXXXX ACA+K+QT LL RR AR+ SR RE+GALVLQRAWR + IGQD TQDEP TT+EQRRSS A SPRP+P TLDR+NVQLAVE+LAKGMRRRGVL+PI AENLSD+LALG+DDP+LE+ALRQGLS+LE AL ST T+ST+ GLK+M AES AV R G D AL HSL+ELEQ LLR RP D
Sbjct: 10 CRREAATTLQKYRRRLTLRRAYVLLRSASVKVGANYRRWRTQRDCFQRRLAVGILQKASRRFVFNTRRRRAANLLQSAYRSSARVKHGRKERKKILDAANVLQRSARAWVARRVVGWRREVQRRNRAAAALQHAMWRHLWRRKKHRQHVAAALTLWKFMGGLSVTLSRIRKRRKSVAATRIQAVARQYISLVKTREILDMHRKERAAATRIQAACRGRRYRKHLTTLQVEXXX----XXXXXXXXXXXXXHISRVKTIKRRACALKIQT-LLHPRRKARYTSR------REQGALVLQRAWRRKIIGQDAKTQDEPTTTSEQRRSSSATSPRPEPPRTLDRANVQLAVESLAKGMRRRGVLDPIIAENLSDTLALGQDDPVLEVALRQGLSNLEQALLWSTRTISTNTGLKQMAAESVAVVRGGKDVALPHSLKELEQGLLRLRPSD 445 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig771.15883.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig771.15883.1 >prot_E_fasciculatus_S2_contig771.15883.1 ID=prot_E_fasciculatus_S2_contig771.15883.1|Name=mRNA_E_fasciculatus_S2_contig771.15883.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=3227bp MLDAFGEVTLPAPQDLGTSEKQAVERIFSLEEHTREIGSIAIRAWMATPRback to top mRNA from alignment at E_fasciculatus_S2_contig771:7345..26043+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig771.15883.1 ID=mRNA_E_fasciculatus_S2_contig771.15883.1|Name=mRNA_E_fasciculatus_S2_contig771.15883.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=18699bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig771:7345..26043+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig771:7345..26043+ >mRNA_E_fasciculatus_S2_contig771.15883.1 ID=mRNA_E_fasciculatus_S2_contig771.15883.1|Name=mRNA_E_fasciculatus_S2_contig771.15883.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=9681bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig771:7345..26043+ (Ectocarpus fasciculatus EfasUO2)back to top |