mRNA_E_fasciculatus_S2_contig7697.15863.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7697.15863.1
Unique NamemRNA_E_fasciculatus_S2_contig7697.15863.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7697.15863.1 vs.
Match: Glycosyltransferase, (family GT4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E3_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 6.950e-37
Identity = 74/81 (91.36%), Postives = 75/81 (92.59%), Query Frame = 1 
Query:    1 LAEGAAFLARLRDDRGLCASMGERGRQKVQMQSPEMVSKHVLEWYRRTRASAKGQKVATSLATVAAERLSSLVAVLMGVGI 243
            LAEGAAFLARLRDDR LCASMGERGRQKVQ+QSPEMVSKHVLEWYRRT AS KGQ V TSL TVAAERLSSLVAVLMGVGI
Sbjct:  132 LAEGAAFLARLRDDRDLCASMGERGRQKVQIQSPEMVSKHVLEWYRRTCASTKGQTVTTSLVTVAAERLSSLVAVLMGVGI 212
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BLAST of mRNA_E_fasciculatus_S2_contig7697.15863.1 vs.
Match: GT4 (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I8_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 2.320e-36
Identity = 74/81 (91.36%), Postives = 76/81 (93.83%), Query Frame = 1 
Query:    1 LAEGAAFLARLRDDRGLCASMGERGRQKVQMQSPEMVSKHVLEWYRRTRASAKGQKVATSLATVAAERLSSLVAVLMGVGI 243
            LAEGAAFLARLRDDR LCASMGERGRQKVQMQSPEMVSKHVLEWYRR RAS KGQK+ TSLATVAAE+LSSLV VLMGVGI
Sbjct:  322 LAEGAAFLARLRDDRDLCASMGERGRQKVQMQSPEMVSKHVLEWYRRARASTKGQKITTSLATVAAEQLSSLVKVLMGVGI 402
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7697.15863.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Glycosyltransferase,6.950e-3791.36family GT4 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
GT42.320e-3691.36protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7697contigE_fasciculatus_S2_contig7697:2226..3848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size245
Hectar predicted targeting categoryother localisation
Exons3
Cds size243
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842431.8973656-CDS-E_fasciculatus_S2_contig7697:2225..23091696842431.8973656-CDS-E_fasciculatus_S2_contig7697:2225..2309Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7697 2226..2309 +
1696842431.906739-CDS-E_fasciculatus_S2_contig7697:3164..32391696842431.906739-CDS-E_fasciculatus_S2_contig7697:3164..3239Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7697 3165..3239 +
1696842431.91576-CDS-E_fasciculatus_S2_contig7697:3762..38461696842431.91576-CDS-E_fasciculatus_S2_contig7697:3762..3846Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7697 3763..3846 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7697.15863.1prot_E_fasciculatus_S2_contig7697.15863.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7697 2226..3846 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7697.15863.1

>prot_E_fasciculatus_S2_contig7697.15863.1 ID=prot_E_fasciculatus_S2_contig7697.15863.1|Name=mRNA_E_fasciculatus_S2_contig7697.15863.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=81bp
LAEGAAFLARLRDDRGLCASMGERGRQKVQMQSPEMVSKHVLEWYRRTRA
SAKGQKVATSLATVAAERLSSLVAVLMGVGI
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mRNA from alignment at E_fasciculatus_S2_contig7697:2226..3848+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7697.15863.1 ID=mRNA_E_fasciculatus_S2_contig7697.15863.1|Name=mRNA_E_fasciculatus_S2_contig7697.15863.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1623bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7697:2226..3848+ (Ectocarpus fasciculatus EfasUO2)
CTAGCGGAAGGAGCGGCGTTTCTGGCTCGCCTCCGCGATGACCGCGGCTT
GTGCGCGAGCATGGGAGAACGGGGCCGGCAAAAGGTTTGTGTGGCGAAAC
GAAAGGGTGTAAATTCACCCGTCGTATCCAAATGCACTGCTGTATGTTTG
TTTTTAGAGGGTTGTGTCAAAAATACATACCTGGCGGTTTCAGGTGTTTT
CCGTCTGTGTCGTACAATTTCGGAGGTTCACTCGTGCGAATTCTCGCTTC
TGCGGGTTGCATTGCAGCCATCCCAGTTGCTATCGTGGCTTTGCTGTGGC
GATAAAGAAATGCTCCTGAACGGAGCGCTTCAGCGCCACTCGGAACCATC
TCTACACACCCTTTTCAGGTGTAGGTGCTTGACACCCAGTTCCCAACACC
ACGCAGAGTTACAACTAGAGATGCCGAATTGTTGTCCACGCCAATTTTTT
TCTGGTTTCACAAGTGTTTTGGTCCTGCGACGCTAGACAAGTGTGCCTGA
AGGTCACGGCAGGCCCGAGACGCGTGTACAAGCATGGCAGCACGTTTCTT
GGAGCAGCACTTCTCCCATCAGACAGACGATGGTGTTGTTTGTAGTTTCG
GTGAGAGAGCTGCCACACGCATGAGGCTGTTTGTAGCGACACGGCGTGAT
AGCAACCGAGAGTCGAGCTACCGCAGCAAAGCCATAACACTCACTACTTT
CCTGCTACATCTGTTCCATGTTGGCGCCATCCATGGCTCATGCAGGCGTT
TCGAGCAGGCAGCGGAAACAGCATCACAGATTGTCACACGAATCGGCTTT
TATGTATGCGCCCAGACGTAAGACGTACAGCTAGCTGGTCGTGCTGCGCG
TAGTGTTTTTGGTTCATGCTCGCCCAACCCCGTCGCCTGAGTTGTCCGTA
ATTTTTGTTTTCTTTTCGCGTGTTGCGACTGCGATGTAGGTGCAAATGCA
GTCTCCGGAGATGGTGTCGAAACACGTCCTGGAATGGTACCGAAGGACCC
GCGCAAGCGCGAAGGTACTGTGTGCACCAAACGGTGTCTTGCTCTCCGAT
CTATTTCGGCAGCGGATCGGGCACATAGTCTTGAACAAAGGCGATTATCA
ACCAGAGCGTACGTCAATTGGTGTGGTGCAGCCACGCATTCCGGCAGTCC
TATGGGCATCCTGACCCTGTTGAAACCGGTTCTATTGAGTATGCCCCCAC
TTTCACCCCTCTCGCCGCATTGGCTGCGGGCCTGCGGCACAACTCTCAGT
CGGACGTTGATGTCTCAGATGAGTCCCCGTGCTCACCCAAGTTCGTCGCA
GGACGGTGTTTTCGCGATTCTCAAAGTATCCGGACCCGAAGGGTTCACGG
AATGCAACAGAAAAATATTCAGCGAGTCTGAGACCCCGAGACCTACTCCG
ATGGCATTGCGAAGAGAAAAAAGTACGATTGTTTGGAGGGTTTACATGAT
GCGGCATGTCTTGTCGAGCTGGGCTACTGTTCGGGTAAACCTCGAGCTAA
AGTCCGATATTTTTCGCTCCCCGTTTGATTGTGGCAGGGCCAAAAGGTTG
CGACCAGCTTGGCGACGGTGGCCGCGGAGCGGCTTTCCTCGCTTGTCGCC
GTGCTCATGGGCGTGGGGATCTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7697:2226..3848+

>mRNA_E_fasciculatus_S2_contig7697.15863.1 ID=mRNA_E_fasciculatus_S2_contig7697.15863.1|Name=mRNA_E_fasciculatus_S2_contig7697.15863.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=243bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7697:2226..3848+ (Ectocarpus fasciculatus EfasUO2)
CTAGCGGAAGGAGCGGCGTTTCTGGCTCGCCTCCGCGATGACCGCGGCTT
GTGCGCGAGCATGGGAGAACGGGGCCGGCAAAAGGTGCAAATGCAGTCTC
CGGAGATGGTGTCGAAACACGTCCTGGAATGGTACCGAAGGACCCGCGCA
AGCGCGAAGGGCCAAAAGGTTGCGACCAGCTTGGCGACGGTGGCCGCGGA
GCGGCTTTCCTCGCTTGTCGCCGTGCTCATGGGCGTGGGGATC
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