mRNA_E_fasciculatus_S2_contig7668.15837.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7668.15837.1
Unique NamemRNA_E_fasciculatus_S2_contig7668.15837.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7668.15837.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1T7_9PHAE)

HSP 1 Score: 510 bits (1314), Expect = 6.820e-154
Identity = 921/1388 (66.35%), Postives = 938/1388 (67.58%), Query Frame = 1 
Query:    1 FQARLLGNRHPGIDASAIGGDAAGGAASGVGGSNMHAYGQGGMVAQGAGGPSXXXXXXXXXXXXXXXXXXX-AWNIPLSQGYATAAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYHLPQPPSVPTGRAGXXXXPGHLTAAALQSHQLQQAAAYSRSXXXXXXXXXXXXXXXXXXARFSQFASANTAPAGKT--PTSP---------------PXXXXXXXXXXXXXXXXXXXXXXXSPIKGXXXXXKRSPEMNGSGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXP----GLGTARAASVSAGLRPGPGAGPEGGIGSAGAARAQASYLCTPSGRTHNPYWSYHPHHXXXXXXXXXXXXXXXXXXXXXXG----------AAGYMDFGAAAAHGYHPSHAQGVAGFPHLGMSHPMQQQWLHQHYAVGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARHAAGQSGVAV-----------------------------MPATAAAGGSATNASNAPRSPAQQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPALPRKDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAAAVGSAEGDTVPSTMASPSELQQMYKKAEGV--DGSYNRRGKNGRRSXXXXXXXXXXXXXXXXXXXQDAANAAPSSLSRSGSSARDTASSAGSSMGNTTADGTSSVASLSXXXXXXXXXRTGSGVXXXXXXXXXXXXXXXXXXXXXDERVSRANSTSSSILSGRSSKGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETEKMGSPQQTCADEFPKSTTGSASVSPRVDIDGAGGLLMGFVETLTKQHRLDQQAQQALLRSGGGGDG------KTAEATAAAQQTREGAKG-----------------VKPDSSSSGTTRPSGQPXXXXXXXXXXGNPGGSHAHPRHRHKHAARMETTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAGDANGKSSPTTTSPAAAAGCKAKRVVGDVTALRRPQGSGGVGGPSPVTAXXXXXXXXXXXXXXXXXXGDCTGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--VDHAEGRAGGLKRRRDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----VGGGNSEEGGYEEDGSGWGSFGKDSGSAEEXXXXXXXXXXXXXXXXXXXXXRYSNPGGGYGDVSPILESKSSVRAQQQRRRQ---TKTGEAVVSEKAVQQREAMAASA 3876
             +ARLLGNRHP IDA+AIGGD AGGA+SGVGGS MHA+GQG MVAQGA G  XXXXXXXXXXXXXXXXXXX AWNIPLS GYATAAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX               XXXX                       XXXXXXXXXXXXXXXX  ARFSQFASANTA AGKT   T+P                XXXXXXXXXXXXXXXXXXXXXXXSPI+G     KRSPEMNG   XXXXXXXXXXXXXXXXXXXXXXXXX               XXXXXX     GLG ARAASVSAGLRPGPGAGPEGGIGSAGAARAQASYLCTPSGRTHNPYWSYHPHH XXXXXXXXXXXXXXXXXXXXXG          A GYMDFGAAAAHGYHPSHAQGVAGFPHLGMSHPMQQQWLHQHYAVGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      RHAAGQSGVAV                             MPA     GS T +S+   S   Q                                             PRK                   XXXXXXXXXXXXXXXXXXXXXXX                            XXXXXXX DAAAVGSAEGDTVPSTMASPSELQQMYKKAEGV   GSYN RGKNGRRSXXXXXXXXXXXXXXXXXXX            R+GSSARD ASSAGSSMGNTTADGTSSVAS+S         RTGSGVXXXXXXXXXXXXXXX       ERVSR +STSSS+LSGRS     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX E EKMGSPQQ CA EF K    SAS SPRVDIDGAGGLLMGFVETLTKQHRLDQQAQQALLRSGGG         KT+EA       R   K                  VKPD SSSGT RPS Q XXXXXXXXXX    GS AHPRHRHKHAARME TA   XXXXXXXXXXXXXXXXXXXXXXXXXXXX                     GCKAKRVVGDVTAL+RPQ SGG  GPS    XXXXXXXXXXXXXXXXXXGDCTGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  VDHAEGR  GLKRRRDQ                      XXXXXXXXXXXXXXXXXXXXX     +G GNS+EGGYEEDGSGWGSFGKD GS EE                     RYSN  G YG VSPILESKSS R QQ+       TK GEA VSE AVQQREAMAASA
Sbjct:  115 IEARLLGNRHPSIDAAAIGGDGAGGASSGVGGSAMHAFGQGEMVAQGAAGXXXXXXXXXXXXXXXXXXXXXXAWNIPLSPGYATAAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQARFSQFASANTAQAGKTLASTNPNNSASLPAADAXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPIEGGEGGSKRSPEMNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXDASERSLGSDKNSSAXXXXXXXXXXXGLGIARAASVSAGLRPGPGAGPEGGIGSAGAARAQASYLCTPSGRTHNPYWSYHPHHAXXXXXXXXXXXXXXXXXXXXXGPTGAGTRGAGAGGYMDFGAAAAHGYHPSHAQGVAGFPHLGMSHPMQQQWLHQHYAVGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------RHAAGQSGVAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPA-----GSGTVSSSNGSSVGGQAKMRAGFPGSSSPSSAAFASTLPRSKGTKPNQQQ-----------PRKAVRSASSSPSSSLRPFHGGXXXXXXXXXXXXXXXXXXXXXXXKMSFARVVAAAALPSTSVRAGGNESGNGXXXXXXXADAAAVGSAEGDTVPSTMASPSELQQMYKKAEGVGVSGSYNVRGKNGRRSXXXXXXXXXXXXXXXXXXXXXXXXXXX--XXRNGSSARDMASSAGSSMGNTTADGTSSVASMSGVSS-----RTGSGVXXXXXXXXXXXXXXX-------ERVSRTDSTSSSVLSGRS-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEIEKMGSPQQACAGEFIKIAGDSASGSPRVDIDGAGGLLMGFVETLTKQHRLDQQAQQALLRSGGGXXXXXXXXXKTSEAAGXXXXQRALPKXXXXXXXXXXXXXXXXXXVKPDRSSSGTPRPSEQXXXXXXXXXXXX---GSRAHPRHRHKHAARMEITARRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--GCKAKRVVGDVTALQRPQESGGGCGPS---XXXXXXXXXXXXXXXXXXXGDCTGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPYVDHAEGRVSGLKRRRDQMAGGGGQREDGNVGEGGGEGRSXXXXXXXXXXXXXXXXXXXXXNSESEIGEGNSDEGGYEEDGSGWGSFGKDPGSTEESNEASEGDYGGGDERSSSFEERYSNTSGEYGGVSPILESKSSARTQQRXXXXXXXTKPGEAAVSESAVQQREAMAASA 1451
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7668.15837.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME3_ECTSI)

HSP 1 Score: 348 bits (892), Expect = 1.910e-101
Identity = 410/627 (65.39%), Postives = 415/627 (66.19%), Query Frame = 1 
Query:  895 GLGTARAASVSAGLRPGPGAGPEGGIGSAGAARAQASYLCTPSGRTHNPYWSYHPHHXXXXXXXXXXXXXXXXXXXXXX--GAAG----YMDFGAAAAHGYHPSHAQGVAGFPHLGMSHPMQQQWLHQHYAVGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARHAAGQSGVAVMPATAAAGG-SATNASNAPRSPAQQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPALPRKDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAAAVGSAEGDTVPSTMASPSELQQMYKKAEGV--DGSYN---RRGKNGRRSXXXXXXXXXXXXXXXXXXXQDAANAAPSSLSRSGSSARDTASSAGSSMGNTTADGTSSVASLSXXXXXXXXXRTGSGVXXXXXXXXXXXXXXXXXXXXXDERVSRANSTSSSILSGRSSKGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETEKMGSPQQTCADEFPKSTTGSASVSPRVDIDGAGGLLMGFVETLTKQHRLDQQAQQALLRSGGGGDGKTAE 2739
            GLG ARA SVSAGLRPGPGAGPEGGIGSAGAARAQASYLCTPSGRTHNPYWSYHPH XXXXXXXXXXXXXXXXXXXXXX  GAAG    YMDFGAAAAHGYHPSHAQGVAGFPHLGMSHPMQQ WLHQHYAVGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    ARHAAGQSGVAVM AT      SATNA+NAPR  AQ                                                                                                                                      AEGDTVPSTMASPSELQQMYKKAEGV   GSYN            XXXXXXXXXXXXXXXXXXXQD ANAAPSSL+RSGSSARDTASSAG        DGTSSVAS+S         RTGSGV   XXXXXXXXXXX       DERVSRANSTSSS+LSGR       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TEKMGSPQQTCADEFPKST GSAS SPRVDIDGAGGLLMGFVETLTKQHRLDQQAQQALLRSGG  DGKT+E
Sbjct:   56 GLGIARATSVSAGLRPGPGAGPEGGIGSAGAARAQASYLCTPSGRTHNPYWSYHPHXXXXXXXXXXXXXXXXXXXXXXXXXGAAGAPGGYMDFGAAAAHGYHPSHAQGVAGFPHLGMSHPMQQLWLHQHYAVGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----ARHAAGQSGVAVMSATXXXXXXSATNANNAPRCQAQLQQLQI--------------------------------------------------------------------------------------------------------------------------------AEGDTVPSTMASPSELQQMYKKAEGVGVSGSYNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDGANAAPSSLARSGSSARDTASSAGXXXXXXXXDGTSSVASMSGVSS-----RTGSGVGSSXXXXXXXXXXX-------DERVSRANSTSSSVLSGRXXX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTEKMGSPQQTCADEFPKSTGGSASGSPRVDIDGAGGLLMGFVETLTKQHRLDQQAQQALLRSGG--DGKTSE 532
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7668.15837.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized6.820e-15466.35protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.910e-10165.39protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7668contigE_fasciculatus_S2_contig7668:1229..5314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size3879
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_001090.1
Cds size3879
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842429.0826902-CDS-E_fasciculatus_S2_contig7668:1228..25871696842429.0826902-CDS-E_fasciculatus_S2_contig7668:1228..2587Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7668 1229..2587 -
1696842429.0934026-CDS-E_fasciculatus_S2_contig7668:2794..53141696842429.0934026-CDS-E_fasciculatus_S2_contig7668:2794..5314Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7668 2795..5314 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7668.15837.1prot_E_fasciculatus_S2_contig7668.15837.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7668 1229..5314 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7668.15837.1

>prot_E_fasciculatus_S2_contig7668.15837.1 ID=prot_E_fasciculatus_S2_contig7668.15837.1|Name=mRNA_E_fasciculatus_S2_contig7668.15837.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=1293bp
FQARLLGNRHPGIDASAIGGDAAGGAASGVGGSNMHAYGQGGMVAQGAGG
PSSQQQQLQNEAAAAAVAAAAAWNIPLSQGYATAAMQQQQHQQHQQQQQQ
MHHHHPQHHNQQARAAAAAAAAAAAYHLPQPPSVPTGRAGHHHHPGHLTA
AALQSHQLQQAAAYSRSQQQMQSQAAAAAAAAAAQARFSQFASANTAPAG
KTPTSPPAAGAAAAAPAPGAAGAPAPASASSPIKGGGGGSKRSPEMNGSG
TSSRNSGGSTTKDTKKQTAAAADASERSLGNDKNSSAAPPPPPPLPPPGL
GTARAASVSAGLRPGPGAGPEGGIGSAGAARAQASYLCTPSGRTHNPYWS
YHPHHAAAAVVAAAAMEQQPGRGGGGAGAAGYMDFGAAAAHGYHPSHAQG
VAGFPHLGMSHPMQQQWLHQHYAVGTGGGSGGGGGGAVAGRGSAAAAAAA
AVGVGLPPWQQLHRHQQMQMQLARHAAGQSGVAVMPATAAAGGSATNASN
APRSPAQQMQMQMPAGSGTVSNSNSSGGSGSGQATMGAGFSGSSSSPAST
PALPRKDPKPNQQQPRKAVRSASSSPSSSNRSFHGGGGEATSGSGSGKIS
FTRVVAAAALPSSSVRDGGGNGNANGGNGGASSADAAAVGSAEGDTVPST
MASPSELQQMYKKAEGVDGSYNRRGKNGRRSRSNSHNHHHRHGGNGNGNG
QDAANAAPSSLSRSGSSARDTASSAGSSMGNTTADGTSSVASLSGVSSVG
GSSRTGSGVGSSGAGSGGSGSGSGSGGSGSDERVSRANSTSSSILSGRSS
KGGGKGTAGGRGGGGGVGSGVGSGVSGSSGLTSGSESGSEETEKMGSPQQ
TCADEFPKSTTGSASVSPRVDIDGAGGLLMGFVETLTKQHRLDQQAQQAL
LRSGGGGDGKTAEATAAAQQTREGAKGVKPDSSSSGTTRPSGQPQQPQQQ
QQQKGNPGGSHAHPRHRHKHAARMETTARRSSATAVVAAPAAAGASPTRA
AANPNEAAAAAAGDANGKSSPTTTSPAAAAGCKAKRVVGDVTALRRPQGS
GGVGGPSPVTAGGGRGGGGGGGGGYKRRRGDCTGNGNGLGESSSGGSGNG
NGGDVGVGSRRARDAVAPPPRPAPSPSVDHAEGRAGGLKRRRDQMAGGGG
GQRENGNGNESSRRPRREGREADVDDGDEDDSNSESEVGGGNSEEGGYEE
DGSGWGSFGKDSGSAEESNEASEGDYGGGDERSSSFEERYSNPGGGYGDV
SPILESKSSVRAQQQRRRQTKTGEAVVSEKAVQQREAMAASA*
back to top

mRNA from alignment at E_fasciculatus_S2_contig7668:1229..5314-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7668.15837.1 ID=mRNA_E_fasciculatus_S2_contig7668.15837.1|Name=mRNA_E_fasciculatus_S2_contig7668.15837.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4086bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7668:1229..5314- (Ectocarpus fasciculatus EfasUO2)
TTTCAGGCGCGTCTTCTCGGAAACCGCCACCCCGGCATCGACGCCTCGGC
CATCGGCGGCGACGCGGCCGGCGGCGCGGCTTCGGGGGTGGGGGGCTCCA
ACATGCACGCCTACGGGCAGGGGGGGATGGTGGCCCAAGGTGCGGGGGGG
CCGTCATCACAGCAGCAGCAGCTGCAGAACGAGGCGGCTGCGGCGGCGGT
AGCGGCGGCGGCGGCGTGGAACATCCCGCTCTCGCAGGGCTACGCCACGG
CCGCGATGCAGCAGCAACAGCATCAGCAGCATCAGCAGCAGCAGCAGCAG
ATGCATCACCACCATCCGCAACATCACAACCAGCAGGCGCGCGCGGCGGC
GGCGGCGGCCGCCGCCGCGGCGGCGTATCACCTCCCGCAGCCGCCTAGCG
TGCCGACGGGCAGGGCTGGCCACCACCACCACCCCGGACACCTCACGGCG
GCGGCGCTGCAGTCGCACCAGCTTCAGCAGGCAGCAGCGTACTCGAGGTC
CCAGCAGCAGATGCAGAGCCAGGCGGCGGCGGCGGCAGCGGCCGCGGCCG
CGCAGGCGCGGTTCTCCCAGTTCGCCTCCGCCAACACGGCGCCGGCGGGG
AAAACGCCTACCTCGCCTCCTGCCGCTGGCGCGGCAGCAGCAGCACCCGC
GCCGGGGGCAGCAGGAGCACCGGCGCCTGCCTCGGCGTCATCACCGATCA
AGGGAGGAGGAGGAGGATCAAAGAGATCGCCAGAGATGAACGGCAGCGGC
ACTTCCTCGCGGAACTCCGGGGGAAGCACCACCAAAGACACCAAGAAGCA
GACGGCGGCGGCGGCGGACGCTTCCGAGCGGTCCCTAGGAAACGACAAGA
ACTCCTCGGCGGCGCCGCCCCCGCCGCCACCGCTCCCGCCACCAGGCCTG
GGCACCGCGCGCGCCGCCTCCGTTTCGGCGGGACTACGGCCGGGCCCCGG
CGCGGGGCCAGAGGGCGGTATCGGAAGCGCCGGTGCGGCCCGCGCACAGG
CTTCGTACCTATGCACACCCTCCGGGCGGACGCACAACCCGTACTGGTCG
TACCACCCGCACCACGCGGCGGCGGCGGTGGTGGCGGCGGCGGCCATGGA
GCAGCAGCCGGGGCGGGGAGGAGGCGGCGCGGGCGCCGCCGGGTACATGG
ATTTTGGGGCCGCCGCGGCACACGGGTATCACCCGTCCCACGCGCAGGGT
GTGGCCGGGTTTCCTCACCTTGGGATGTCGCACCCCATGCAGCAGCAGTG
GCTGCACCAGCACTACGCCGTGGGCACCGGCGGCGGCAGTGGCGGCGGCG
GTGGCGGGGCGGTTGCAGGCCGGGGAAGCGCCGCGGCGGCGGCGGCGGCG
GCGGTTGGAGTTGGGCTTCCCCCGTGGCAGCAGCTGCACCGGCACCAGCA
GATGCAGATGCAGCTGGCACGGCACGCGGCGGGGCAGTCGGGCGTGGCGG
TGATGCCGGCAACGGCGGCAGCCGGTGGCAGTGCTACCAACGCCAGCAAC
GCCCCCCGCTCTCCGGCGCAGCAGATGCAGATGCAGATGCCGGCCGGTTC
AGGCACCGTGAGCAACAGCAATAGCAGCGGCGGCAGTGGCAGTGGCCAAG
CAACGATGGGGGCAGGATTCTCGGGCTCCTCCTCCTCCCCGGCTTCCACG
CCCGCTTTGCCCCGCAAAGACCCCAAACCCAACCAGCAGCAGCCCAGGAA
GGCTGTTCGGTCGGCGTCCTCTTCGCCCTCGTCGTCGAATCGGTCGTTCC
ACGGCGGCGGTGGGGAGGCGACCAGCGGCAGCGGCAGCGGTAAGATTAGC
TTCACCCGCGTAGTGGCGGCGGCGGCGCTTCCCTCTTCCTCGGTGCGCGA
CGGCGGCGGCAACGGGAACGCCAACGGCGGCAACGGCGGCGCTTCGTCGG
CGGACGCGGCCGCCGTCGGCAGCGCCGAGGGCGACACGGTGCCGTCCACG
ATGGCCTCCCCCAGCGAGCTCCAGCAGATGTACAAGAAGGCCGAGGGCGT
GGACGGCAGCTACAACCGCCGCGGCAAGAACGGCCGCCGCAGCCGCAGCA
ACAGCCACAACCACCACCACCGCCACGGCGGCAACGGCAACGGCAACGGC
CAGGACGCCGCGAACGCGGCGCCCTCCTCCCTGTCCCGGAGCGGCAGCAG
CGCCCGAGACACCGCCAGCAGCGCCGGGAGCAGCATGGGGAACACCACAG
CGGACGGCACGTCCTCCGTCGCCTCCCTCTCCGGCGTTAGCAGCGTCGGT
GGTTCCTCGCGTACCGGGTCCGGCGTGGGCTCTTCCGGTGCCGGCTCCGG
CGGCTCCGGCTCCGGTTCCGGCTCCGGCGGCTCCGGCTCCGACGAGCGGG
TTAGCCGCGCCAACAGCACCAGCAGCAGCATCCTCAGCGGGAGGAGCTCC
AAGGGCGGCGGGAAGGGCACGGCCGGGGGCCGCGGTGGCGGCGGAGGCGT
TGGCAGCGGTGTTGGCAGCGGCGTCAGCGGCTCTTCGGGGTTGACGTCCG
GGAGCGAGAGCGGCAGCGAGGTGAGAGATAGAGAGGCGTTGGCGGTAAAG
TAGCTGCTGCTGCTGTGTGATGGTTGTAGAGGCAGAGAGACGTTCTCTCG
GTCGATACAATATGACTGATCCGTTTGCCCCATTTTTTGGTGTAGTTGTC
TTTTCTTTTGTGGCCACCACCCGCCGACTCAACACCTCCACCCCGTTTTT
GTTCTTTTTTGTTCTTTGTTTTTTCAGGAGACCGAGAAGATGGGTTCGCC
GCAGCAGACGTGTGCCGACGAGTTCCCGAAGAGCACCACCGGTTCAGCGT
CGGTCTCGCCTCGGGTGGACATCGACGGCGCCGGCGGCTTGCTCATGGGC
TTCGTGGAGACGTTGACGAAGCAGCACCGCCTCGACCAGCAGGCACAGCA
AGCGCTTCTTCGCAGCGGCGGCGGCGGCGACGGCAAAACGGCCGAGGCGA
CTGCGGCGGCACAGCAAACGAGGGAGGGTGCAAAGGGCGTCAAGCCCGAC
AGCAGCAGCAGCGGCACTACACGGCCTTCAGGGCAGCCGCAGCAACCGCA
GCAGCAGCAGCAGCAGAAGGGAAACCCTGGTGGCTCGCACGCGCACCCAC
GCCACCGGCACAAGCATGCCGCACGGATGGAAACCACGGCGCGGCGTTCT
TCCGCCACCGCCGTTGTCGCGGCGCCGGCTGCGGCCGGCGCTAGCCCGAC
ACGGGCTGCGGCCAACCCCAACGAGGCGGCGGCGGCGGCCGCCGGCGATG
CTAACGGCAAGAGCTCGCCCACCACGACTTCTCCAGCAGCAGCAGCCGGC
TGCAAAGCCAAGCGCGTCGTCGGGGACGTGACCGCCTTGCGACGGCCGCA
GGGAAGCGGCGGTGTCGGTGGCCCGTCGCCGGTGACAGCCGGCGGCGGCC
GCGGTGGCGGCGGCGGCGGCGGCGGCGGCTACAAGCGTAGGCGCGGGGAT
TGCACCGGCAACGGTAACGGCTTGGGCGAGAGCAGCAGCGGGGGCAGTGG
CAACGGTAACGGCGGCGACGTCGGCGTCGGCAGCCGGCGTGCCCGCGATG
CCGTGGCCCCCCCGCCCCGCCCCGCCCCCTCTCCCTCCGTGGATCACGCG
GAGGGCCGGGCGGGTGGTCTCAAGCGGCGGAGAGACCAGATGGCCGGCGG
CGGCGGCGGTCAGAGGGAGAATGGCAACGGCAACGAATCTTCCCGCAGGC
CGCGGAGAGAAGGCCGAGAGGCGGACGTCGACGACGGCGACGAGGACGAC
AGCAACAGCGAGTCCGAGGTCGGCGGGGGCAACTCCGAGGAGGGTGGTTA
CGAGGAGGACGGCAGCGGGTGGGGGAGCTTCGGGAAGGACTCGGGCTCCG
CCGAGGAGAGCAACGAGGCCAGCGAGGGCGACTATGGCGGCGGGGACGAA
CGCTCCAGCTCCTTCGAGGAACGGTATTCGAACCCCGGTGGGGGGTACGG
CGACGTCTCCCCCATCCTCGAGAGCAAGTCCAGCGTCAGGGCGCAGCAGC
AGCGGCGGCGGCAGACGAAGACCGGCGAGGCGGTGGTGTCTGAGAAAGCC
GTCCAGCAACGGGAGGCGATGGCGGCGTCGGCATGA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7668:1229..5314-

>mRNA_E_fasciculatus_S2_contig7668.15837.1 ID=mRNA_E_fasciculatus_S2_contig7668.15837.1|Name=mRNA_E_fasciculatus_S2_contig7668.15837.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=3879bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7668:1229..5314- (Ectocarpus fasciculatus EfasUO2)
TTTCAGGCGCGTCTTCTCGGAAACCGCCACCCCGGCATCGACGCCTCGGC
CATCGGCGGCGACGCGGCCGGCGGCGCGGCTTCGGGGGTGGGGGGCTCCA
ACATGCACGCCTACGGGCAGGGGGGGATGGTGGCCCAAGGTGCGGGGGGG
CCGTCATCACAGCAGCAGCAGCTGCAGAACGAGGCGGCTGCGGCGGCGGT
AGCGGCGGCGGCGGCGTGGAACATCCCGCTCTCGCAGGGCTACGCCACGG
CCGCGATGCAGCAGCAACAGCATCAGCAGCATCAGCAGCAGCAGCAGCAG
ATGCATCACCACCATCCGCAACATCACAACCAGCAGGCGCGCGCGGCGGC
GGCGGCGGCCGCCGCCGCGGCGGCGTATCACCTCCCGCAGCCGCCTAGCG
TGCCGACGGGCAGGGCTGGCCACCACCACCACCCCGGACACCTCACGGCG
GCGGCGCTGCAGTCGCACCAGCTTCAGCAGGCAGCAGCGTACTCGAGGTC
CCAGCAGCAGATGCAGAGCCAGGCGGCGGCGGCGGCAGCGGCCGCGGCCG
CGCAGGCGCGGTTCTCCCAGTTCGCCTCCGCCAACACGGCGCCGGCGGGG
AAAACGCCTACCTCGCCTCCTGCCGCTGGCGCGGCAGCAGCAGCACCCGC
GCCGGGGGCAGCAGGAGCACCGGCGCCTGCCTCGGCGTCATCACCGATCA
AGGGAGGAGGAGGAGGATCAAAGAGATCGCCAGAGATGAACGGCAGCGGC
ACTTCCTCGCGGAACTCCGGGGGAAGCACCACCAAAGACACCAAGAAGCA
GACGGCGGCGGCGGCGGACGCTTCCGAGCGGTCCCTAGGAAACGACAAGA
ACTCCTCGGCGGCGCCGCCCCCGCCGCCACCGCTCCCGCCACCAGGCCTG
GGCACCGCGCGCGCCGCCTCCGTTTCGGCGGGACTACGGCCGGGCCCCGG
CGCGGGGCCAGAGGGCGGTATCGGAAGCGCCGGTGCGGCCCGCGCACAGG
CTTCGTACCTATGCACACCCTCCGGGCGGACGCACAACCCGTACTGGTCG
TACCACCCGCACCACGCGGCGGCGGCGGTGGTGGCGGCGGCGGCCATGGA
GCAGCAGCCGGGGCGGGGAGGAGGCGGCGCGGGCGCCGCCGGGTACATGG
ATTTTGGGGCCGCCGCGGCACACGGGTATCACCCGTCCCACGCGCAGGGT
GTGGCCGGGTTTCCTCACCTTGGGATGTCGCACCCCATGCAGCAGCAGTG
GCTGCACCAGCACTACGCCGTGGGCACCGGCGGCGGCAGTGGCGGCGGCG
GTGGCGGGGCGGTTGCAGGCCGGGGAAGCGCCGCGGCGGCGGCGGCGGCG
GCGGTTGGAGTTGGGCTTCCCCCGTGGCAGCAGCTGCACCGGCACCAGCA
GATGCAGATGCAGCTGGCACGGCACGCGGCGGGGCAGTCGGGCGTGGCGG
TGATGCCGGCAACGGCGGCAGCCGGTGGCAGTGCTACCAACGCCAGCAAC
GCCCCCCGCTCTCCGGCGCAGCAGATGCAGATGCAGATGCCGGCCGGTTC
AGGCACCGTGAGCAACAGCAATAGCAGCGGCGGCAGTGGCAGTGGCCAAG
CAACGATGGGGGCAGGATTCTCGGGCTCCTCCTCCTCCCCGGCTTCCACG
CCCGCTTTGCCCCGCAAAGACCCCAAACCCAACCAGCAGCAGCCCAGGAA
GGCTGTTCGGTCGGCGTCCTCTTCGCCCTCGTCGTCGAATCGGTCGTTCC
ACGGCGGCGGTGGGGAGGCGACCAGCGGCAGCGGCAGCGGTAAGATTAGC
TTCACCCGCGTAGTGGCGGCGGCGGCGCTTCCCTCTTCCTCGGTGCGCGA
CGGCGGCGGCAACGGGAACGCCAACGGCGGCAACGGCGGCGCTTCGTCGG
CGGACGCGGCCGCCGTCGGCAGCGCCGAGGGCGACACGGTGCCGTCCACG
ATGGCCTCCCCCAGCGAGCTCCAGCAGATGTACAAGAAGGCCGAGGGCGT
GGACGGCAGCTACAACCGCCGCGGCAAGAACGGCCGCCGCAGCCGCAGCA
ACAGCCACAACCACCACCACCGCCACGGCGGCAACGGCAACGGCAACGGC
CAGGACGCCGCGAACGCGGCGCCCTCCTCCCTGTCCCGGAGCGGCAGCAG
CGCCCGAGACACCGCCAGCAGCGCCGGGAGCAGCATGGGGAACACCACAG
CGGACGGCACGTCCTCCGTCGCCTCCCTCTCCGGCGTTAGCAGCGTCGGT
GGTTCCTCGCGTACCGGGTCCGGCGTGGGCTCTTCCGGTGCCGGCTCCGG
CGGCTCCGGCTCCGGTTCCGGCTCCGGCGGCTCCGGCTCCGACGAGCGGG
TTAGCCGCGCCAACAGCACCAGCAGCAGCATCCTCAGCGGGAGGAGCTCC
AAGGGCGGCGGGAAGGGCACGGCCGGGGGCCGCGGTGGCGGCGGAGGCGT
TGGCAGCGGTGTTGGCAGCGGCGTCAGCGGCTCTTCGGGGTTGACGTCCG
GGAGCGAGAGCGGCAGCGAGGAGACCGAGAAGATGGGTTCGCCGCAGCAG
ACGTGTGCCGACGAGTTCCCGAAGAGCACCACCGGTTCAGCGTCGGTCTC
GCCTCGGGTGGACATCGACGGCGCCGGCGGCTTGCTCATGGGCTTCGTGG
AGACGTTGACGAAGCAGCACCGCCTCGACCAGCAGGCACAGCAAGCGCTT
CTTCGCAGCGGCGGCGGCGGCGACGGCAAAACGGCCGAGGCGACTGCGGC
GGCACAGCAAACGAGGGAGGGTGCAAAGGGCGTCAAGCCCGACAGCAGCA
GCAGCGGCACTACACGGCCTTCAGGGCAGCCGCAGCAACCGCAGCAGCAG
CAGCAGCAGAAGGGAAACCCTGGTGGCTCGCACGCGCACCCACGCCACCG
GCACAAGCATGCCGCACGGATGGAAACCACGGCGCGGCGTTCTTCCGCCA
CCGCCGTTGTCGCGGCGCCGGCTGCGGCCGGCGCTAGCCCGACACGGGCT
GCGGCCAACCCCAACGAGGCGGCGGCGGCGGCCGCCGGCGATGCTAACGG
CAAGAGCTCGCCCACCACGACTTCTCCAGCAGCAGCAGCCGGCTGCAAAG
CCAAGCGCGTCGTCGGGGACGTGACCGCCTTGCGACGGCCGCAGGGAAGC
GGCGGTGTCGGTGGCCCGTCGCCGGTGACAGCCGGCGGCGGCCGCGGTGG
CGGCGGCGGCGGCGGCGGCGGCTACAAGCGTAGGCGCGGGGATTGCACCG
GCAACGGTAACGGCTTGGGCGAGAGCAGCAGCGGGGGCAGTGGCAACGGT
AACGGCGGCGACGTCGGCGTCGGCAGCCGGCGTGCCCGCGATGCCGTGGC
CCCCCCGCCCCGCCCCGCCCCCTCTCCCTCCGTGGATCACGCGGAGGGCC
GGGCGGGTGGTCTCAAGCGGCGGAGAGACCAGATGGCCGGCGGCGGCGGC
GGTCAGAGGGAGAATGGCAACGGCAACGAATCTTCCCGCAGGCCGCGGAG
AGAAGGCCGAGAGGCGGACGTCGACGACGGCGACGAGGACGACAGCAACA
GCGAGTCCGAGGTCGGCGGGGGCAACTCCGAGGAGGGTGGTTACGAGGAG
GACGGCAGCGGGTGGGGGAGCTTCGGGAAGGACTCGGGCTCCGCCGAGGA
GAGCAACGAGGCCAGCGAGGGCGACTATGGCGGCGGGGACGAACGCTCCA
GCTCCTTCGAGGAACGGTATTCGAACCCCGGTGGGGGGTACGGCGACGTC
TCCCCCATCCTCGAGAGCAAGTCCAGCGTCAGGGCGCAGCAGCAGCGGCG
GCGGCAGACGAAGACCGGCGAGGCGGTGGTGTCTGAGAAAGCCGTCCAGC
AACGGGAGGCGATGGCGGCGTCGGCATGA
back to top