mRNA_E_fasciculatus_S2_contig7662.15834.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7662.15834.1
Unique NamemRNA_E_fasciculatus_S2_contig7662.15834.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7662.15834.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCP1_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 5.800e-51
Identity = 102/107 (95.33%), Postives = 103/107 (96.26%), Query Frame = 2 
Query:    2 ALTVARSTKRSRALIYTGDLGRSWQQIVEDTVMQDFRRNAFARKDSMPYLQYSVVLSLDMMAATGNTDGPSASAMAXXXXXXXXX-PTGDATTANGSGREVLGRASI 319
            ALTV RSTKRSRALIYTGDLGRSWQQIVEDTVMQDFRRNAFARKDSMPYLQYSVVLSLDMMAATGNTDGPSASAMAXXXXXXXXX PTGDATTANGSGR+ L RASI
Sbjct:  259 ALTVVRSTKRSRALIYTGDLGRSWQQIVEDTVMQDFRRNAFARKDSMPYLQYSVVLSLDMMAATGNTDGPSASAMAXXXXXXXXXVPTGDATTANGSGRDALRRASI 365
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7662.15834.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized5.800e-5195.33protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7662contigE_fasciculatus_S2_contig7662:2716..4702 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size323
Hectar predicted targeting categoryother localisation
Exons3
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842428.761422-CDS-E_fasciculatus_S2_contig7662:2716..28611696842428.761422-CDS-E_fasciculatus_S2_contig7662:2716..2861Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7662 2717..2861 -
1696842428.7736335-CDS-E_fasciculatus_S2_contig7662:3906..40161696842428.7736335-CDS-E_fasciculatus_S2_contig7662:3906..4016Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7662 3907..4016 -
1696842428.7871273-CDS-E_fasciculatus_S2_contig7662:4636..47021696842428.7871273-CDS-E_fasciculatus_S2_contig7662:4636..4702Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7662 4637..4702 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7662.15834.1prot_E_fasciculatus_S2_contig7662.15834.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7662 2717..4702 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7662.15834.1

>prot_E_fasciculatus_S2_contig7662.15834.1 ID=prot_E_fasciculatus_S2_contig7662.15834.1|Name=mRNA_E_fasciculatus_S2_contig7662.15834.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=107bp
GADRRAVYEALESPDIHRRPRQILAADSGRHRDAGLPTQRLCKEGLHAVS
PVQCGTIPGYDGRYREYRWAIRVRYGSNSGGGGGSTNRGRNHCKRQRAGG
FRAGFDR
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mRNA from alignment at E_fasciculatus_S2_contig7662:2716..4702-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7662.15834.1 ID=mRNA_E_fasciculatus_S2_contig7662.15834.1|Name=mRNA_E_fasciculatus_S2_contig7662.15834.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1987bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7662:2716..4702- (Ectocarpus fasciculatus EfasUO2)
GGCGCTGACCGTCGCGCGGTCTACGAAGCGCTCGAGAGCCCTGATATACA
CCGGCGACCTCGGCAGGTATCTAGCACAAGCAAGCGTCATTGGTGCACGG
CCCTGGCCTGGTGTTATGTAGGCGGTGCCGCCCCGCGCTCATCATCATCG
TTTCAAGCTCCCCCTATTCGTGGTCTGTGCATGTCAGTGTTTGCCCTTGT
TCCAGGAGGGCTGAACGGTTCCTAAGGGGTGCGCCAATGAGCGTTTCCCG
CGAAATACCGGTGTTTCGTTGTCACGGGGTATGTGGTATGTGGCAATGGC
GAGAAGGAAAAGTGTTAAGAAGGTGCGTACGTGTGTTGGTCTGAGGTAAA
ATCGGTTGTTCCATGCCAGCCGCCGGAATATGGAATCAAGAGGGTGCTTG
GTCAAGCTTGTGGTGATTTGCAGGTTTCTCGTTCTACAGTGTGACGACGG
ACGCTTGTGTCCTGGTCTGCTCCGAGCATGGAAGCACGGGGGTAGATTGG
AACGGTTTCAGTGCAAATACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAGCAATTCTGGTGCACAGGTACA
GGTACATTCGTTGTGCCCGAGGTTCATCTAATACCTGCTTGACATGCAAC
TATCCCGCAAATGCAACATCTCGTGCTCACTCTCAGATCCTGGCAGCAGA
TAGTGGAAGACACCGTGATGCAGGACTTCCGACGCAACGCCTTTGCAAGG
AAGGACTCCATGCCGTATCTCCAGTACAGTGTGGTACTATCCCTGGGTAA
GACCTTGGCATTTCGTGTGGTAGACTAGTAGTTATTGCAGGGAGGCGTTG
TGCTGCAGCTTTTTCTTATCCAAATTCCTGGAGTGCACCGTGCGTGCCTA
CTGTGGATTTTCCTCTAGGCTAGCATACCACGTACAAGCAGTGGTCTGAG
ACCAATAGCATTCAACACGAAAGGGCAGCACATGAGCAGACGTAACAACG
GTAGGTTGTGGTTTCGAGCGGCCGTAGACGGAAGTCTTTTTCGTACGACC
CTTCTAGCATGTGCCTTCAGTGACAACCCTACCATTTACATCTAACCAAT
CACAAACGCATGGGTAGATAGTATAGTGCTGCTGGGATAATTTTGCCTTA
TCTCGGAGGATGGAAGGGACTCCTCCTGCATGGGCCAAGATGAATTCTCG
CGCACCACATGCTACAGTGGGTGGACCGACAGATCAAACAGTTTTGCCGT
TCTGCGTTATTTTTGGCGAATCGTAAACTCGTGAGAGTCCGGATTACCGG
TGACCGATTTGTCGGGGTAACCTCTCATAGGGACACATCTCGAAAAGCGT
TTGGTCGAGGACGACCTACCTCTTCGTCGACGCCAACGTGACAAGGGGGC
ACCGTCCTCGACAGACGTTGGGGAGATGTGACTCTTATTCCCAAGGCCGT
TCCCACACATTGGTTTGACCCACGTGAAGGTCTCAGGAATCGGCGCACAC
GAGTTCCTCTGACTCTTGTCAGGCGTCTGTGACGACGTGGTGGGCCCGAG
AAATCGGGCAAATATTATGTGACAATACACAGCAAATCACAGCAAATCAC
GACAGCAACAGGCAACAACGTCAATCGATTTTGTTTGCGTCAAAGTTGCC
TTCAAAGGGCTCAACACGTGACTTCTTCGGCCTTCCTTGTAGAAGGCTGG
CAGCAATCCGACCGACATCATCACAAGTTCTAACCTAAATTGCGCCTACA
CACACAGACAGAGTGCAGAATCGCCCACGCGGAATATTATCAATTCGCGC
CCGTTGCTCTTCGCTCTTGTGTATAATTCCCACCCCATCAGATATGATGG
CCGCTACCGGGAATACCGATGGGCCATCCGCGTCCGCTATGGCAGCAACA
GCGGCGGCGGCGGCGGCAGCACCAACCGGGGACGCAACCACTGCAAACGG
CAGCGGGCGGGAGGTTTTAGGGCGGGCTTCGATCGGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7662:2716..4702-

>mRNA_E_fasciculatus_S2_contig7662.15834.1 ID=mRNA_E_fasciculatus_S2_contig7662.15834.1|Name=mRNA_E_fasciculatus_S2_contig7662.15834.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=321bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7662:2716..4702- (Ectocarpus fasciculatus EfasUO2)
GGCGCTGACCGTCGCGCGGTCTACGAAGCGCTCGAGAGCCCTGATATACA
CCGGCGACCTCGGCAGATCCTGGCAGCAGATAGTGGAAGACACCGTGATG
CAGGACTTCCGACGCAACGCCTTTGCAAGGAAGGACTCCATGCCGTATCT
CCAGTACAGTGTGGTACTATCCCTGGATATGATGGCCGCTACCGGGAATA
CCGATGGGCCATCCGCGTCCGCTATGGCAGCAACAGCGGCGGCGGCGGCG
GCAGCACCAACCGGGGACGCAACCACTGCAAACGGCAGCGGGCGGGAGGT
TTTAGGGCGGGCTTCGATCGG
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