mRNA_E_fasciculatus_S2_contig7662.15833.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7662.15833.1
Unique NamemRNA_E_fasciculatus_S2_contig7662.15833.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7662.15833.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCH5_9PHAE)

HSP 1 Score: 358 bits (919), Expect = 1.860e-113
Identity = 252/299 (84.28%), Postives = 260/299 (86.96%), Query Frame = 1 
Query:    1 VRVTWHLVLDATPMVARPVHLDGTSVYGLSTEGLVRRHDVETIIVNGTPVKPPFAQAWMQLPSWVTQGRSGGVAGAPGMITVSSRG-VWGGVDDVNG---RSGGNFERRTPVEVSGTAMAFQGLAGVRAASTTRRRKGELAMVGFDASSRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDTKNNETNLARNKGKKKKKGMWPMDYKGPLACETSFDCTGGYVCCDLVVVKICCSNGVMQRKPGDLIPSLIPIPGRGRTELDQCQRQLAPQ 885
            VRVTWHLVLDATPMVARPVHLDGTSVYGLSTEGLVRRHD+ETIIVNGTPVKPPFAQAWMQLPSWVTQGRSGGVAGAPGM +VSS G V G +DD +    RSGG FERR P+++SGTAMAFQGLA VRAAS TRRRKG LA VGFDAS   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                   KGMWP+DYKGPLACETSFDCTGGYVCCDLVVVKICCSNGVMQRKPGDLIPSLIPIPGRGRTELDQCQRQL PQ
Sbjct:  230 VRVTWHLVLDATPMVARPVHLDGTSVYGLSTEGLVRRHDLETIIVNGTPVKPPFAQAWMQLPSWVTQGRSGGVAGAPGMTSVSSSGGVRGEIDDFDRSGRRSGGKFERRIPMDLSGTAMAFQGLAEVRAASITRRRKGLLAAVGFDASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGMWPIDYKGPLACETSFDCTGGYVCCDLVVVKICCSNGVMQRKPGDLIPSLIPIPGRGRTELDQCQRQLTPQ 528
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BLAST of mRNA_E_fasciculatus_S2_contig7662.15833.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ76_ECTSI)

HSP 1 Score: 347 bits (889), Expect = 3.090e-111
Identity = 225/301 (74.75%), Postives = 231/301 (76.74%), Query Frame = 1 
Query:    1 VRVTWHLVLDATPMVARPVHLDGTSVYGLSTEGLVRRHDVETIIVNGTPVKPPFAQAWMQLPSWVTQGRSGGVAGAPGMITVSSRG--VWGGVDDVNG----RSGGNFERRTPVEVSGTAMAFQGLAGVRAASTTRRRKGELAMVGFDASSRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDTKNNETNLARNKGKKKKKGMWPMDYKGPLACETSFDCTGGYVCCDLVVVKICCSNGVMQRKPGDLIPSLIPIPGRGRTELDQCQRQLAPQ 885
            VR+TWHLVLDATPMV RPVHLDGTSVYGLSTEGLVRRHDVETIIVNGTPVKPPFAQAWMQLPSWVTQGRSGGVAGAPGMI+VSS    VWGG+DD N     RSGGNFERR PV++SGTAMAFQGLAGVRAAS TR                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                        KGMWP+DYKGPLACETSFDCTGGYVCCDLVVVKICCSNGVMQRKPGDLIPSLIPIPGRGRTELDQCQRQLAPQ
Sbjct:  103 VRITWHLVLDATPMVVRPVHLDGTSVYGLSTEGLVRRHDVETIIVNGTPVKPPFAQAWMQLPSWVTQGRSGGVAGAPGMISVSSSSGDVWGGMDDFNRSGRRRSGGNFERRIPVDLSGTAMAFQGLAGVRAASITRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------------------------------KGMWPIDYKGPLACETSFDCTGGYVCCDLVVVKICCSNGVMQRKPGDLIPSLIPIPGRGRTELDQCQRQLAPQ 363
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BLAST of mRNA_E_fasciculatus_S2_contig7662.15833.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRU5_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 4.260e-30
Identity = 143/299 (47.83%), Postives = 177/299 (59.20%), Query Frame = 1 
Query:    1 VRVTWHLVLDATPMVARPVHLDGTSVYGLSTEGLVRRHDVETIIVNGTPVKPPFAQAWMQLPSWVTQGRSGGVAGAPGMITVSSRGVWGGVDDVNGRSGGNFE---------RRTPVEVSGTAMAFQGLAGVRAASTTRRRKGELAMVGFDASSRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDTKNNETNLARNKGKKKKKGMWPMDYKGPLACETSFDCTGGYVCCDLVVVKICCSNGVMQRKPGDLIPSLIPIPGRGRTELDQCQR 870
            VRVTW++VL       RP+++DG S Y ++++GL  RHD+ET++VNG  V+PPFA AW+ LP+WV++G     +GA   +      + G    +  +  G  E          RT  E+ G  M        +A ST       + M+  D  S S XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            KNN              G W       LACETS+DCTGG VCCD V++K+CCSNG+ Q K G+LIPSL+PIPGRGR E D  +R
Sbjct:  215 VRVTWNVVLQLKAR-QRPIYVDGISAYHINSDGLAHRHDLETVVVNGRAVEPPFAYAWINLPAWVSRGAVAKPSGAGAALPTPHAVIGGAPTQLFEQQQGEAEDAVGAMFDAARTDSELRGDYM--------QALST-------VLMMDTDGVSESGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------KNNA-------------GGWFGSKGAELACETSWDCTGGMVCCDFVLLKVCCSNGIRQPKFGELIPSLVPIPGRGRNENDNPKR 472
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7662.15833.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized1.860e-11384.28protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.090e-11174.75protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.260e-3047.83protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7662contigE_fasciculatus_S2_contig7662:124..1963 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score322.8
Seed ortholog evalue1.6e-85
Seed eggNOG ortholog2880.D8LJ76
Model size1840
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Uncharacterized conserved protein (DUF2358)
EggNOG OGs2CYHV@1,2S4H3@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_005050.1
Cds size849
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842428.8249161-UTR-E_fasciculatus_S2_contig7662:123..1621696842428.8249161-UTR-E_fasciculatus_S2_contig7662:123..162Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7662 124..162 +
1696842428.8541346-UTR-E_fasciculatus_S2_contig7662:1011..19631696842428.8541346-UTR-E_fasciculatus_S2_contig7662:1011..1963Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7662 1012..1963 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842428.8420303-CDS-E_fasciculatus_S2_contig7662:162..10111696842428.8420303-CDS-E_fasciculatus_S2_contig7662:162..1011Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7662 163..1011 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7662.15833.1prot_E_fasciculatus_S2_contig7662.15833.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7662 163..1011 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7662.15833.1

>prot_E_fasciculatus_S2_contig7662.15833.1 ID=prot_E_fasciculatus_S2_contig7662.15833.1|Name=mRNA_E_fasciculatus_S2_contig7662.15833.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=283bp
MVARPVHLDGTSVYGLSTEGLVRRHDVETIIVNGTPVKPPFAQAWMQLPS
WVTQGRSGGVAGAPGMITVSSRGVWGGVDDVNGRSGGNFERRTPVEVSGT
AMAFQGLAGVRAASTTRRRKGELAMVGFDASSRSSGGNDGGGMMIWKASS
EGAGGGSAESGEDRGASSSPPPPPGGMGGSDQDKDDTSRRGDTKNNETNL
ARNKGKKKKKGMWPMDYKGPLACETSFDCTGGYVCCDLVVVKICCSNGVM
QRKPGDLIPSLIPIPGRGRTELDQCQRQLAPQ*
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mRNA from alignment at E_fasciculatus_S2_contig7662:124..1963+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7662.15833.1 ID=mRNA_E_fasciculatus_S2_contig7662.15833.1|Name=mRNA_E_fasciculatus_S2_contig7662.15833.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1840bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7662:124..1963+ (Ectocarpus fasciculatus EfasUO2)
GTGCGCGTAACCTGGCACTTGGTCCTGGACGCAACGCCGATGGTGGCGAG
ACCGGTGCACTTGGACGGCACGAGCGTGTACGGCCTCAGCACGGAGGGCC
TGGTCCGGCGGCACGACGTGGAGACGATAATCGTCAACGGGACCCCGGTG
AAGCCTCCCTTCGCGCAGGCCTGGATGCAGCTCCCCTCCTGGGTGACTCA
GGGGCGCAGCGGCGGCGTGGCGGGGGCCCCGGGTATGATAACCGTCAGCA
GCAGGGGCGTCTGGGGGGGGGTTGACGACGTAAACGGGAGGAGTGGTGGT
AACTTCGAGAGAAGAACACCAGTGGAGGTGAGCGGGACGGCGATGGCGTT
TCAGGGCTTGGCGGGGGTGCGGGCAGCAAGCACCACGAGACGAAGAAAGG
GCGAGCTGGCGATGGTGGGGTTCGATGCGAGCAGCAGGAGCAGCGGCGGC
AACGACGGCGGGGGGATGATGATCTGGAAGGCTTCCTCGGAGGGCGCGGG
AGGGGGGTCCGCAGAATCGGGGGAGGACCGGGGTGCGTCGTCGTCGCCGC
CGCCGCCGCCTGGCGGGATGGGGGGGAGCGACCAAGACAAGGACGACACC
AGCAGGCGTGGTGATACGAAAAACAACGAAACAAATCTCGCGAGGAACAA
GGGGAAGAAGAAGAAGAAGGGGATGTGGCCGATGGACTACAAAGGGCCCC
TGGCGTGCGAGACGAGCTTTGACTGCACCGGGGGCTACGTCTGCTGCGAC
CTGGTCGTGGTGAAGATCTGCTGCAGCAACGGCGTTATGCAAAGAAAGCC
CGGAGACCTCATACCGTCCTTGATACCAATACCAGGCAGAGGGAGGACGG
AGTTGGACCAATGTCAGCGTCAACTGGCACCGCAGTAACGAGGATTTTTG
TTTTTGCTCATTTTTTCCAAGTGTTTCTGCTGTCCTAATATCTGTGGCGG
TCTCGAAGGGGACGATCCCCAACTGTTGCCGATGGGTGTTGGTAGTGGGG
GGTTGCTTTTGCCTCTGCCCCCAGGATTTGTAAGCCTGCGGGGGATAGTT
GCTACGGTGGAATGCACATACGGGCGGGGTGATGAGAATGAGACCAGTCC
CTCGCGAATTGTGTTTGCTACAGCAGCAAGATACGTAAACGAAGAAATGG
TGTTGTGATGCGTGTGTCTTGTTGTTTTCAAGACACTGCATGTCACGATG
ACTTCCCAGATATTGCTAGATTCATCGCCTGTTCCCGTAGAAAATTAAGA
CTCAGGATAGGTATTTTTTGGGTTTCGTGTATAGTGTTGTTCCGGAACAA
ATTTTATGAGCATGCGGTGTACGTTCGAGTTAAAAGAGGAAAAGTGCTAG
AGATGTTTTTGTAGAAGGGAGGCCCGGCGTGCAGCAGTATCGGGTGTAGA
GAAGGATTAGAAAGCCAACAGCAAACCAAATATCCTCCGATTTGTGGTAA
TGTGTGGCTTGTAGATGGCAGGCAACTCTCCGAGGGCATTGTCAACGGGG
TTGTGTGGGGTGTTATGCTAGCCGGTCGACGCCAAGTATATAGTCACAGG
CAAGAGAGATCGCGCTATTGTGATATGGAATATGAGGCTGGTAAAACACA
ACACCGATTGGGGTCATGCCGCAGCGTTGACAAGCAGTATGTCGTATCCC
AGAGGAGTAAGACGAGGGGGTGTGAGTGGAGTCGTGCCCTCTACTACTGT
TGGGTAGGCCCACGAACCATACCCGTAAGGGTGTCTTCGAGAAGGGCACC
GCCGTGTCATCGCACGGAACCAAATCAACTGAACCGGCGTCGCTGGAGCA
ATTGTCAAACAATCAACTGCTTACGCGCACAGCTAAAGGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7662:124..1963+

>mRNA_E_fasciculatus_S2_contig7662.15833.1 ID=mRNA_E_fasciculatus_S2_contig7662.15833.1|Name=mRNA_E_fasciculatus_S2_contig7662.15833.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=849bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7662:124..1963+ (Ectocarpus fasciculatus EfasUO2)
ATGGTGGCGAGACCGGTGCACTTGGACGGCACGAGCGTGTACGGCCTCAG
CACGGAGGGCCTGGTCCGGCGGCACGACGTGGAGACGATAATCGTCAACG
GGACCCCGGTGAAGCCTCCCTTCGCGCAGGCCTGGATGCAGCTCCCCTCC
TGGGTGACTCAGGGGCGCAGCGGCGGCGTGGCGGGGGCCCCGGGTATGAT
AACCGTCAGCAGCAGGGGCGTCTGGGGGGGGGTTGACGACGTAAACGGGA
GGAGTGGTGGTAACTTCGAGAGAAGAACACCAGTGGAGGTGAGCGGGACG
GCGATGGCGTTTCAGGGCTTGGCGGGGGTGCGGGCAGCAAGCACCACGAG
ACGAAGAAAGGGCGAGCTGGCGATGGTGGGGTTCGATGCGAGCAGCAGGA
GCAGCGGCGGCAACGACGGCGGGGGGATGATGATCTGGAAGGCTTCCTCG
GAGGGCGCGGGAGGGGGGTCCGCAGAATCGGGGGAGGACCGGGGTGCGTC
GTCGTCGCCGCCGCCGCCGCCTGGCGGGATGGGGGGGAGCGACCAAGACA
AGGACGACACCAGCAGGCGTGGTGATACGAAAAACAACGAAACAAATCTC
GCGAGGAACAAGGGGAAGAAGAAGAAGAAGGGGATGTGGCCGATGGACTA
CAAAGGGCCCCTGGCGTGCGAGACGAGCTTTGACTGCACCGGGGGCTACG
TCTGCTGCGACCTGGTCGTGGTGAAGATCTGCTGCAGCAACGGCGTTATG
CAAAGAAAGCCCGGAGACCTCATACCGTCCTTGATACCAATACCAGGCAG
AGGGAGGACGGAGTTGGACCAATGTCAGCGTCAACTGGCACCGCAGTAA
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