mRNA_E_fasciculatus_S2_contig7613.15780.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7613.15780.1
Unique NamemRNA_E_fasciculatus_S2_contig7613.15780.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7613.15780.1 vs.
Match: Ribosomal (RNA-processing protein 8 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX03_9PHAE)

HSP 1 Score: 478 bits (1231), Expect = 9.390e-162
Identity = 403/506 (79.64%), Postives = 411/506 (81.23%), Query Frame = 1 
Query:   88 GKGGSSPKLGEPGGDHARGKMEGERDRVAETPTGGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEADAAVAXXXXXXXXTAPAPG-----SLSATPPAGDAEQVCIRPVERCSDHGGNKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------RDAEQVPPVESGSRHRTXXXXXXXXXXXXXXXXXXXXXKMPISPVKTKGSSPXXXXXXXXXXXXXXXXXXXX---APRLSELQKRMRQKLEGAQFRMINETLYTSESGASLAKFKQEPELFDVYHRGFREQVEKWPVHPLDIIIDWLKKYPKARVADFGCGEARLAATVPNKVHSFDLVSPNPLVTACDMANVPIKDASVHVAVFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEEGGVERFLEVTKRLGFDTRQMDRSNKMFLLAEFKKSGRKPERGVEFEAKACIYKRR 1542
            G GG+SP LGEPGGDHAR + EGER  VAE   G   XXXXXXXXXXXXXXXXXX   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       XXXXXXXX  PAP      + S+    GD E V   PVERCSDHGG K XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             R AEQVPPV+S +RHRT                     KMPISPV+TKGS P          XXXXXXXX     APRLSELQKRMRQKLEGAQFRMINETLYTSESGASLAKFKQEPELFDVYHRGFREQVEKWPVHPLDIIIDWLKKYPKARVADFGCGEARLAATVPNKVHSFDLVSPNPLVTACDMANVPIKDASVHVA+FCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEEGGVERFLEVTKRLGFDT QMDRSNKMFLLAEFKKSGRKPERGVEFEAKACIYKRR
Sbjct:   29 GNGGNSPNLGEPGGDHARRETEGERGMVAEIAAGXXXXXXXXXXXXXXXXXXXXXRDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAPAPAQQAACSSPTHPGDVEHV--PPVERCSDHGGKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHAEQVPPVDSSNRHRTKRPKKAREAGHNSSTNND---KMPISPVQTKGSPPSGGGNTAGRAXXXXXXXXGSGSGAPRLSELQKRMRQKLEGAQFRMINETLYTSESGASLAKFKQEPELFDVYHRGFREQVEKWPVHPLDIIIDWLKKYPKARVADFGCGEARLAATVPNKVHSFDLVSPNPLVTACDMANVPIKDASVHVAIFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEEGGVERFLEVTKRLGFDTMQMDRSNKMFLLAEFKKSGRKPERGVEFEAKACIYKRR 529
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7613.15780.1 vs.
Match: Ribosomal (RNA-processing protein 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVW1_ECTSI)

HSP 1 Score: 439 bits (1129), Expect = 2.290e-149
Identity = 234/252 (92.86%), Postives = 236/252 (93.65%), Query Frame = 1 
Query:  769 KMPISPVKTKGSSPXXXXXXXXXXXXXXXXXXXX-APRLSELQKRMRQKLEGAQFRMINETLYTSESGASLAKFKQEPELFDVYHRGFREQVEKWPVHPLDIIIDWLKKYPKARVADFGCGEARLAATVPNKVHSFDLVSPNPLVTACDMANVPIKDASVHVAVFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEEGGVERFLEVTKRLGFDTRQMDRSNKMFLLAEFKKSGRKPERGVEFEAK 1521
            KMPISPV+TKGS P           XXXXXXX   APRLSELQKRMRQKLEGAQFRMINETLYTSESG SLAKFKQEPELFDVYHRGFREQVEKWPVHPLDIIIDWLKKYPKARVADFGCGEARLAATVPNKVHSFDLVSPNPLVTACDMANVPIKDASVHVAVFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEEGGVERFLEVT+RLGFDTRQMDRSNKMFLLAEFKKSGRKPERGVEFEAK
Sbjct:   13 KMPISPVQTKGSRPSGGGNTAGRAAXXXXXXXGSGAPRLSELQKRMRQKLEGAQFRMINETLYTSESGVSLAKFKQEPELFDVYHRGFREQVEKWPVHPLDIIIDWLKKYPKARVADFGCGEARLAATVPNKVHSFDLVSPNPLVTACDMANVPIKDASVHVAVFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEEGGVERFLEVTRRLGFDTRQMDRSNKMFLLAEFKKSGRKPERGVEFEAK 264
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7613.15780.1 vs.
Match: Ribosomal (RNA-processing protein 8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7W6_9STRA)

HSP 1 Score: 331 bits (849), Expect = 1.290e-108
Identity = 159/221 (71.95%), Postives = 187/221 (84.62%), Query Frame = 1 
Query:  880 LSELQKRMRQKLEGAQFRMINETLYTSESGASLAKFKQEPELFDVYHRGFREQVEKWPVHPLDIIIDWLKKYPKARVADFGCGEARLAATVPNKVHSFDLVSPNPLVTACDMANVPIKDASVHVAVFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEEGGVERFLEVTKRLGFDTRQMDRSNKMFLLAEFKKSGRKPERGVEFEAKACIYKRR 1542
            +S+LQ+ M++KLEGA+FRM+NE LYT  S  S ++F +EP+LFD+YHRGFREQVEKWPVHPLD+II WLKKYPKA +ADFGCGEARLA TVPN+ HSFDL +PN  VTACDMA+VP+ DASVH+AVFCLSLMGTNLADF+REA RVL PGGLVKVAEVRSRFEG  GG+  FL V +RLGFD RQ D ++ MF++ EFKK+ R PE  VEF AKAC+YKRR
Sbjct:    1 MSKLQEAMKRKLEGARFRMLNEDLYTKHSTLSFSQFSEEPDLFDIYHRGFREQVEKWPVHPLDVIIRWLKKYPKAVIADFGCGEARLAQTVPNRCHSFDLCAPNAHVTACDMAHVPLPDASVHIAVFCLSLMGTNLADFVREARRVLKPGGLVKVAEVRSRFEGAPGGLNAFLGVMRRLGFDQRQCDNTSTMFVMMEFKKASRAPEADVEFTAKACVYKRR 221
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7613.15780.1 vs.
Match: Ribosomal (RNA-processing protein 8 n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024G7I7_9STRA)

HSP 1 Score: 273 bits (697), Expect = 6.200e-85
Identity = 126/222 (56.76%), Postives = 176/222 (79.28%), Query Frame = 1 
Query:  880 LSELQKRMRQKLEGAQFRMINETLYTSESGASLAKFKQEPELFDVYHRGFREQVEKWPVHPLDIIIDWLKKYPKARVADFGCGEARLAATVPNKVHSFDLVSPNPLVTACDMANVPIKDASVHVAVFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEE-GGVERFLEVTKRLGFDTRQMDRSNKMFLLAEFKKSGRKPERGVEFEAKACIYKRR 1542
            LS+LQ+ MR++L+G++FRM+NE LYT     +   F+ +PELFD+YH+GFREQV KWP++PLDI ID++KK+P A VADFGCGEARLA +VPN+VHSFDLV+PN  V AC++A+VP+   S+ +A++CL+LMGT + ++LREAHRV+  GG++K+AEV+SRFE ++ GG++ F+   ++LGFD ++ D  NKMF+L EF+KS RK +  V  E KAC YKRR
Sbjct:   56 LSKLQQAMRKRLDGSRFRMLNEELYTKTGDDAFQTFQDDPELFDIYHQGFREQVTKWPINPLDIFIDYIKKHPNAVVADFGCGEARLAQSVPNRVHSFDLVAPNDHVVACNIAHVPLNSKSIDIAIYCLALMGTTIPEYLREAHRVMKAGGILKIAEVKSRFETKQLGGIQGFISQLRKLGFDYQEKDERNKMFVLLEFQKSNRKKDTNVRIELKACEYKRR 277
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7613.15780.1 vs.
Match: Ribosomal (RNA-processing protein 8 n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3U140_9STRA)

HSP 1 Score: 272 bits (695), Expect = 1.600e-84
Identity = 130/225 (57.78%), Postives = 178/225 (79.11%), Query Frame = 1 
Query:  871 APRLSELQKRMRQKLEGAQFRMINETLYTSESGASLAKFKQEPELFDVYHRGFREQVEKWPVHPLDIIIDWLKKYPKARVADFGCGEARLAATVPNKVHSFDLVSPNPLVTACDMANVPIKDASVHVAVFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEE-GGVERFLEVTKRLGFDTRQMDRSNKMFLLAEFKKSGRKPERGVEFEAKACIYKRR 1542
            A RL+E    MR+K++G +FRM+NE LYT+  GA+ + F+ +PELFDVYH+GFRE  +KWP +PLD  ID++K++PKA VADFGCG+ARLA +VPNKVHSFDLVS  P VTAC++A+VP+KD++V + V+CL+LMGT++ +++RE +RVL PGG++KVAEV+SRFE E  GG+E F++  +++GFD +  D  NKMF+L EF KS RKP++    E KAC YKRR
Sbjct:   65 AERLAE----MRRKIDGGKFRMLNEQLYTTTGGAAFSTFQSDPELFDVYHQGFREMADKWPTNPLDTFIDYVKRHPKAVVADFGCGDARLAESVPNKVHSFDLVSRKPHVTACNIADVPLKDSTVDIGVYCLALMGTSVREYVREVYRVLKPGGVLKVAEVKSRFESESLGGIEGFVQTLRKMGFDCKHKDERNKMFVLFEFVKSSRKPQKVDPIEFKACEYKRR 285
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7613.15780.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C374_PYTOL)

HSP 1 Score: 270 bits (689), Expect = 1.230e-83
Identity = 132/222 (59.46%), Postives = 172/222 (77.48%), Query Frame = 1 
Query:  880 LSELQKRMRQKLEGAQFRMINETLYTSESGASLAKFKQEPELFDVYHRGFREQVEKWPVHPLDIIIDWLKKYPKARVADFGCGEARLAATVPNKVHSFDLVSPNPLVTACDMANVPIKDASVHVAVFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEE-GGVERFLEVTKRLGFDTRQMDRSNKMFLLAEFKKSGRKPERGVEFEAKACIYKRR 1542
            LS++Q+ MR++L+G +FRM+NE LYTS    +   F+ +PELFDVYH+GFREQ EKWPV+PLD  ID++KK+PKA VADFGCG+ARLA +V NKVHSFDLVS  P VTAC++ANVP+ D S+ +AV+CL+LMGT++ +++ E +RVL P G++KVAEV+SRFE E  GG+  F+   KR+GFD +  D +NKMF L EF K+ RKPE GV  E K C YKRR
Sbjct:   63 LSKMQEEMRRRLDGGKFRMLNEQLYTSTGKEAFKTFQSDPELFDVYHQGFREQAEKWPVNPLDTFIDYVKKHPKAIVADFGCGDARLAESVKNKVHSFDLVSRKPQVTACNIANVPLPDKSIDIAVYCLALMGTSIREYVLEVYRVLKPKGILKVAEVKSRFETEGLGGIAGFVAAMKRMGFDLQHKDEANKMFALFEFVKTPRKPEDGVLIEFKPCEYKRR 284
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7613.15780.1 vs.
Match: Ribosomal (RNA-processing protein 8 n=4 Tax=Phytophthora TaxID=4783 RepID=D0N5P9_PHYIT)

HSP 1 Score: 267 bits (683), Expect = 8.790e-83
Identity = 128/225 (56.89%), Postives = 176/225 (78.22%), Query Frame = 1 
Query:  871 APRLSELQKRMRQKLEGAQFRMINETLYTSESGASLAKFKQEPELFDVYHRGFREQVEKWPVHPLDIIIDWLKKYPKARVADFGCGEARLAATVPNKVHSFDLVSPNPLVTACDMANVPIKDASVHVAVFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEE-GGVERFLEVTKRLGFDTRQMDRSNKMFLLAEFKKSGRKPERGVEFEAKACIYKRR 1542
            A RL+E    MR+K++G +FRM+NE LYT+    + + F+ +PELFDVYH+GFRE  +KWP +PLD  ID++K++PKA VADFGCG+ARLA +VPNKVHSFDLVS  P+VTAC++A+VP+KD+SV +AV+CL+LMGT++ +++RE +RVL PGG++KVAEV+SRFE E  GG++ F++  +++GFD +  D  NKMF+L E  KS RKP+     E KAC YKRR
Sbjct:   61 AERLAE----MRRKIDGGKFRMLNEQLYTTTGDDAYSTFQDDPELFDVYHQGFREMADKWPTNPLDTFIDYVKRHPKAVVADFGCGDARLAESVPNKVHSFDLVSRKPIVTACNIADVPLKDSSVDIAVYCLALMGTSVREYVREVYRVLKPGGVLKVAEVKSRFESESLGGIDGFVQTLRKMGFDCKHKDERNKMFVLFELVKSTRKPQNVAPIEFKACEYKRR 281
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7613.15780.1 vs.
Match: Ribosomal (RNA-processing protein 8 n=10 Tax=Phytophthora TaxID=4783 RepID=A0A0W8D147_PHYNI)

HSP 1 Score: 267 bits (682), Expect = 1.120e-82
Identity = 128/225 (56.89%), Postives = 176/225 (78.22%), Query Frame = 1 
Query:  871 APRLSELQKRMRQKLEGAQFRMINETLYTSESGASLAKFKQEPELFDVYHRGFREQVEKWPVHPLDIIIDWLKKYPKARVADFGCGEARLAATVPNKVHSFDLVSPNPLVTACDMANVPIKDASVHVAVFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEE-GGVERFLEVTKRLGFDTRQMDRSNKMFLLAEFKKSGRKPERGVEFEAKACIYKRR 1542
            A RL+E    MR+K++G +FRM+NE LYT+    + + F+ +PELFDVYH+GFRE  +KWP +PLD  ID++K++PKA VADFGCG+ARLA +VPNKVHSFDLVS  P+VTAC++A+VP+KD+SV + V+CL+LMGT++ +++RE +RVL PGG++KVAEV+SRFE E  GG+E F++  +++GFD +  D  NKMF+L EF KS R+P+     E KAC YKRR
Sbjct:   58 AERLAE----MRRKIDGGKFRMLNEQLYTTTGDDAFSTFQDDPELFDVYHQGFREMADKWPTNPLDTFIDFVKRHPKAVVADFGCGDARLAESVPNKVHSFDLVSRKPIVTACNIADVPLKDSSVDIGVYCLALMGTSVREYVREVYRVLKPGGVLKVAEVKSRFESESLGGIEGFVQTLRKMGFDCKHKDERNKMFVLFEFVKSTRRPQNVGPIEFKACEYKRR 278
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7613.15780.1 vs.
Match: Ribosomal (RNA-processing protein 8 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G5K6_PHYRM)

HSP 1 Score: 264 bits (674), Expect = 2.870e-82
Identity = 128/222 (57.66%), Postives = 171/222 (77.03%), Query Frame = 1 
Query:  901 MRQKLEGAQFRMINETLYTSESGASLAKFKQEPELFDVYHRGFREQVEKWPVHPLDIIIDWLK-------KYPKARVADFGCGEARLAATVPNKVHSFDLVSPNPLVTACDMANVPIKDASVHVAVFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEE-GGVERFLEVTKRLGFDTRQMDRSNKMFLLAEFKKSGRKPERGVEFEAKACIYKRR 1542
            MR+KL+G +FRM+NE LYTS  G + + F+++PELFDVYH+GFREQ +KWP +PLD  ID++K       ++PKA VADFGCG+ARLA +VPN VHSFDLVS  P VTAC++A+VP+KDASV + V+CL+LMGT++ +++RE +RVL PGG++KVAEV+SRFE E  GG+  F+++  ++GFD +  D  NKMF+L EF KS RKP+     E KAC YKRR
Sbjct:    2 MRRKLDGGKFRMLNEQLYTSTGGDAFSTFQEDPELFDVYHQGFREQADKWPTNPLDTFIDYVKCVADALRRHPKAVVADFGCGDARLAESVPNTVHSFDLVSRKPHVTACNIADVPLKDASVDIGVYCLALMGTSIREYVREVYRVLKPGGVLKVAEVKSRFESESLGGIVGFVQILSKMGFDCKSKDERNKMFVLFEFVKSSRKPQNVRPVELKACEYKRR 223
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7613.15780.1 vs.
Match: Ribosomal (RNA-processing protein 8 n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V8R3_9STRA)

HSP 1 Score: 265 bits (677), Expect = 6.940e-82
Identity = 127/225 (56.44%), Postives = 174/225 (77.33%), Query Frame = 1 
Query:  871 APRLSELQKRMRQKLEGAQFRMINETLYTSESGASLAKFKQEPELFDVYHRGFREQVEKWPVHPLDIIIDWLKKYPKARVADFGCGEARLAATVPNKVHSFDLVSPNPLVTACDMANVPIKDASVHVAVFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEE-GGVERFLEVTKRLGFDTRQMDRSNKMFLLAEFKKSGRKPERGVEFEAKACIYKRR 1542
            A RL+E    MR+K++G +FRM+NE LYT+    + + F+ +PELFDVYH+GFRE  +KWP +PLD  ID++K+YPKA VADFGCG+ARL+ +VPNKVHSFDLVS  P VTAC++A+VP+KD+SV + V+CL+LMGT++ +++RE HRVL PGG++ VAEV+SRFE E  GG++ F++  +++GFD +  D  NKMF+L +F KS RKP+     E KAC YKRR
Sbjct:   61 AERLAE----MRRKIDGGKFRMLNEKLYTTTGDDAFSTFQDDPELFDVYHQGFREMADKWPTNPLDNFIDYVKRYPKAVVADFGCGDARLSESVPNKVHSFDLVSCKPHVTACNIADVPLKDSSVDIGVYCLALMGTSVREYIREVHRVLKPGGILMVAEVKSRFESETLGGIDGFVQTLRKMGFDCKHKDERNKMFVLFDFVKSSRKPQNVRPIEFKACEYKRR 281
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7613.15780.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Ribosomal9.390e-16279.64RNA-processing protein 8 n=1 Tax=Ectocarpus sp. CC... [more]
Ribosomal2.290e-14992.86RNA-processing protein 8 n=1 Tax=Ectocarpus silicu... [more]
Ribosomal1.290e-10871.95RNA-processing protein 8 n=1 Tax=Tribonema minus T... [more]
Ribosomal6.200e-8556.76RNA-processing protein 8 n=2 Tax=Albugo candida Ta... [more]
Ribosomal1.600e-8457.78RNA-processing protein 8 n=4 Tax=Phytophthora TaxI... [more]
Uncharacterized1.230e-8359.46protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Ribosomal8.790e-8356.89RNA-processing protein 8 n=4 Tax=Phytophthora TaxI... [more]
Ribosomal1.120e-8256.89RNA-processing protein 8 n=10 Tax=Phytophthora Tax... [more]
Ribosomal2.870e-8257.66RNA-processing protein 8 n=1 Tax=Phytophthora ramo... [more]
Ribosomal6.940e-8256.44RNA-processing protein 8 n=2 Tax=Peronospora effus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7613contigE_fasciculatus_S2_contig7613:960..5381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score441.4
Seed ortholog evalue5.7e-121
Seed eggNOG ortholog2880.D7FVW1
Preferred nameRRP8
Model size1545
KEGG koko:K10260,ko:K14850,ko:K17478
KEGG Pathwayko04120,map04120
KEGG ModuleM00387
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0000183,GO:0000785,GO:0000792,GO:0001510,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005677,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006996,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008219,GO:0008649,GO:0008757,GO:0009267,GO:0009451,GO:0009605,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0009991,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0012501,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0016433,GO:0016458,GO:0016740,GO:0016741,GO:0017053,GO:0019219,GO:0019222,GO:0022613,GO:0023052,GO:0030684,GO:0030686,GO:0030687,GO:0030688,GO:0031167,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032259,GO:0032991,GO:0033553,GO:0033554,GO:0034470,GO:0034641,GO:0034660,GO:0035064,GO:0035556,GO:0040029,GO:0042149,GO:0042254,GO:0042273,GO:0042393,GO:0042594,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045787,GO:0045814,GO:0045892,GO:0045934,GO:0046015,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0071156,GO:0071158,GO:0071496,GO:0071704,GO:0071840,GO:0071944,GO:0072331,GO:0072332,GO:0080090,GO:0090068,GO:0090304,GO:0090568,GO:0097190,GO:0097193,GO:0140030,GO:0140034,GO:0140098,GO:0140102,GO:1901360,GO:1902679,GO:1903506,GO:1903507,GO:1990904,GO:2000112,GO:2000113,GO:2001141
Exons5
EggNOG free text desc.chromatin silencing at rDNA
EggNOG OGsKOG3045@1,KOG3045@2759
EC2.1.1.287
Cds size1545
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03009,ko03110,ko04121,ko04131,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842423.6024246-CDS-E_fasciculatus_S2_contig7613:959..9831696842423.6024246-CDS-E_fasciculatus_S2_contig7613:959..983Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7613 960..983 -
1696842423.6171482-CDS-E_fasciculatus_S2_contig7613:1975..21551696842423.6171482-CDS-E_fasciculatus_S2_contig7613:1975..2155Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7613 1976..2155 -
1696842423.6281438-CDS-E_fasciculatus_S2_contig7613:2799..29791696842423.6281438-CDS-E_fasciculatus_S2_contig7613:2799..2979Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7613 2800..2979 -
1696842423.6385794-CDS-E_fasciculatus_S2_contig7613:3440..35871696842423.6385794-CDS-E_fasciculatus_S2_contig7613:3440..3587Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7613 3441..3587 -
1696842423.6497052-CDS-E_fasciculatus_S2_contig7613:4367..53811696842423.6497052-CDS-E_fasciculatus_S2_contig7613:4367..5381Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7613 4368..5381 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7613.15780.1prot_E_fasciculatus_S2_contig7613.15780.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7613 960..5381 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7613.15780.1

>prot_E_fasciculatus_S2_contig7613.15780.1 ID=prot_E_fasciculatus_S2_contig7613.15780.1|Name=mRNA_E_fasciculatus_S2_contig7613.15780.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=515bp
MGGEERHQQRQHAAGSSTAAKENRRKRKKGKGGSSPKLGEPGGDHARGKM
EGERDRVAETPTGGAEQQQGGNSNKSSDSINHKDGAARSPQQQRQRQQAA
SSAKATVSASTSGGSSDRCTVDGGKKKKSKKRRRKEADAAVADAAVAAAA
TAPAPGSLSATPPAGDAEQVCIRPVERCSDHGGNKKKKSKRRRRQEASAA
ASAPGPAPTSSSSAAPPPRDAEQVPPVESGSRHRTKKSKKARAREAGSDN
NTNNDDKMPISPVKTKGSSPSGAGTTTGRAAAAAAGSGSGAPRLSELQKR
MRQKLEGAQFRMINETLYTSESGASLAKFKQEPELFDVYHRGFREQVEKW
PVHPLDIIIDWLKKYPKARVADFGCGEARLAATVPNKVHSFDLVSPNPLV
TACDMANVPIKDASVHVAVFCLSLMGTNLADFLREAHRVLVPGGLVKVAE
VRSRFEGEEGGVERFLEVTKRLGFDTRQMDRSNKMFLLAEFKKSGRKPER
GVEFEAKACIYKRR*
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mRNA from alignment at E_fasciculatus_S2_contig7613:960..5381-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7613.15780.1 ID=mRNA_E_fasciculatus_S2_contig7613.15780.1|Name=mRNA_E_fasciculatus_S2_contig7613.15780.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4422bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7613:960..5381- (Ectocarpus fasciculatus EfasUO2)
ATGGGTGGCGAAGAGCGGCACCAGCAACGGCAGCACGCGGCGGGATCGTC
AACAGCAGCCAAGGAGAACAGGCGCAAGCGAAAGAAGGGGAAGGGCGGCA
GCAGCCCGAAGCTTGGGGAACCTGGCGGTGACCACGCAAGAGGGAAAATG
GAAGGGGAGAGAGATAGGGTGGCTGAGACTCCCACTGGTGGCGCCGAACA
GCAGCAGGGTGGCAACAGCAACAAGAGCAGCGACAGCATCAACCACAAGG
ATGGCGCAGCCAGGAGCCCACAGCAGCAGCGGCAGCGGCAACAGGCCGCA
AGTTCGGCCAAGGCCACCGTGTCCGCCTCTACATCGGGAGGCAGCAGCGA
TAGATGCACAGTTGACGGTGGGAAGAAGAAGAAGAGCAAGAAGCGTCGTC
GAAAGGAAGCAGACGCCGCGGTAGCAGACGCCGCGGTAGCAGCAGCAGCA
ACAGCACCAGCACCAGGGTCCTTATCGGCAACGCCTCCTGCTGGCGATGC
TGAACAGGTATGCATACGACCCGTCGAGAGATGCAGCGATCACGGTGGGA
ACAAGAAGAAGAAGAGCAAGAGACGTCGTCGACAGGAAGCATCAGCAGCA
GCATCAGCACCAGGGCCAGCACCGACGTCTTCGTCGTCAGCAGCGCCTCC
GCCGCGCGATGCTGAACAGGTGCCACCCGTCGAGAGCGGGAGCCGCCACC
GCACCAAGAAATCCAAGAAAGCAAGGGCAAGGGAGGCGGGAAGCGATAAC
AATACCAACAACGACGACAAGATGCCGATCAGTCCCGTGAAAACGAAAGG
GTCGTCACCTTCTGGGGCAGGCACCACAACCGGGCGGGCGGCGGCGGCGG
CGGCAGGGTCTGGGTCGGGCGCTCCCAGGCTGTCGGAGCTGCAGAAGCGC
ATGCGGCAGAAACTGGAGGGCGCCCAGTTCCGCATGATCAACGAGACGCT
ATACACGTCGGAGAGCGGGGCCTCGCTCGCTAAGTTCAAGCAAGAGCCGG
AGCTATTTGATGTGGTGCGAAAGAGAGAGAGGCTTTGTGCCCTCCTCTCG
CTGTAAAAGTCAGACTTTTGGACGCGACGCCCTATTGGTGAAGGCCCAAC
TCTGTTGGTTTCCCCGTGTACTGTAGTCTCTTGGTCGTCAGGGATACTTC
GCCGGAACATGTGTCGGTACCAAGCTGTCGGAGAGATTGTGCGTTTGTCG
GGGACAGCGGTCGGCGAAAATCATGAAACTTGTTAGTTGGACACACGGAG
CCATGTGGCGGAACAAGACGTGGGGCCGATCACCGGCAGCGTCCGAGGGG
GAATGTTCTAAACGCATGAAATGAAAGGTAGCGACTACGAAGCGGCTAAA
CGATGAAGCCGTTGGACACCCACTTTGCCGCATATTGTTGCGTGCACTCG
GCGATAGGGTTCACGCTCTTTGTCAATTGTTGTGTGATTTTGAGGCGGTA
ACCTGTCCAACCTGTTCCCCCCCTAGGCGCCGAAGATAAAGAGGTCGTGT
ACGCGAGAGAAGTTTGGGAAGGTCCGCCAGAAGGGGGAGGGCAAGAAGGC
CTCATCCAATCAAATGCGAACATTATGTGATCGACAACTGCTGTGTCAAT
TACAGTAGTTATACCAGCGTCCATGTACCAGCAGCAGACCACTATATAGC
AGCAACTGCACCATTTCCTTTTGCTGCACCGAACCAACCCACCTTCGGCT
CCCACATTCGCAGCTGCTGTTCCCTCCGCCCAAGTCACCTGATCCCCCCC
CACTTCGCCACCGAAATACTCCCGACCGAACCTCTGTGCGACAGTACCAT
CGGGGATTCCGAGAACAGGTGGAGAAGTGGCCGGTGCATCCGCTGGACAT
CATCATCGACTGGCTCAAGAAGTACCCGAAGGCGCGAGTGGCCGACTTTG
GCTGCGGGGAGGCGCGCCTTGCGGCGACGGTGCCCAACAAGGTATGGTAC
TGCTGCAGGGGGGCCCAAAGGCATTCGCAATTCGCTGTCTTTTTGGCCCC
GCGTGTTTCTAGGGTAGCCGAAGTCATGTTACGTTATTCCTTGTCTTTTC
CCGTGAAGCCGCAGTTTCAGTTTTTGTTTTTTTGGTGCAGGGTTGTCCGA
ACTTTCTTGTCCAGACGCTTTTGGTGACTGGCGTCGCACAGGCTGATTCA
GCTTTGTCGATTATTTCTTCTTCTTGGTGAACCAACCTCATGGCTCCTTT
CTCGCAGCAAACAGTAAACGAAAGGCTTGTTCGCGTCGCCCTGCACAGGT
GCCATGAAAAAGAAGTTCGCACGATGAATCGCGTGCTGCGCTGAACATTG
TTGTCTCCCTACGTTTATTCAGGTTTTCGTGCACCCCTCCCCTCCCCCTC
GACTTCGGTGATGATTCCTTGACAAAATTACCTCTCACACTCAACACGGC
AGGTGCACTCGTTCGACCTGGTGTCACCCAACCCGCTGGTGACTGCGTGC
GACATGGCCAACGTCCCGATCAAGGACGCCTCGGTTCACGTGGCCGTTTT
CTGCCTCTCGCTCATGGGGACTAACCTCGCGGACTTTTTGCGCGAGGCTC
ATCGGGTGCTCGTCCCGGGGGGGCTCGTGAAGGTGGGGTCTAGACTACAT
GTTGGGCTTCTCTGTGTTTGTTGCTGTTGATTGTCATCGTCGTCGTCTGT
TGTCATCGTTGCCGCTGATGATGGTGTTGTTGTGTTCTTTGCTTGAACTC
TCTCAGGTATTCGTACGTTTTTTTTTTTTGTCTGCGTGTGTGTGGTTTCT
CGTCGGTTGAGTCTAATGGTCGCCTCGTCTCGTTTGGCTTGCCCTCGTTT
CCGTGTGGGGTAAGGTCTGATTCCCCGCGAGCGTATTGCCTTTTACTTTG
ACTCGGGGGTCGAAATGATTGCTGGGACTTGTCTCGCACGCAAGCCGCGT
TGAGCCATGCCTGTGGAAGTAACGAATTCGCAGACGCGTTTCTCGGTCCG
ACGTCCTGTTCCACCAACGATGTTGTTGATAGCAGAGGCATTGCCATTTT
TTATGAGAAGACCACACAGGGTGGACAACGTAGGAGCGGCTTGGCGGCGG
TCCACCCAAGACGCCCATTGCCCCCTACCCCCTACTTCATCCTTACCCGA
TGCGGGCCAACGCCCGATGCGGACCAACTCCCGATGCGGGCCAACTCCCG
ATGCGGGCGAATACCCTACGCGGGCCAACCGAACGCTTGCACCCGACCAT
TTCCTCTGTGTGGCTTGCAAACCAAGGTGGCCGAGGTGAGGAGCAGGTTC
GAGGGGGAGGAGGGCGGGGTGGAGCGTTTCTTGGAGGTGACGAAGCGGCT
CGGCTTCGACACGAGGCAGATGGACCGCTCCAACAAGATGTTCCTCCTCG
CGGAGTTCAAGAAGTCCGGCCGGAAGCCGGAGAGGGGCGTCGAGTTCGAG
GCCAAGGTGAAGCCATCACCGTCTCTGAGTGTCGCTTTAAGCAGTGCGTG
CTTGTGTCTGATAATGTCTTCACATGTGTCTGCGTGTCTTCAGTATTTGG
ATCGACCGCGCTAGCCGGCTGGCTAACGAAAAGATGTCAGCCTCAGTGCG
GCTGAAAACATAAATATGCTTGTACAGGCCATGGTCTGGCACGCTGCGAC
GGGGAGGCTAAACTGCTCTCCGGATTAAAGCCGAAAACATCGGTTTATGT
ATGTAGCTTTATTTGGCATAGACCGTGCTATCGGGATTGCATACAACGAG
CCATCAGCTTTGAAGCGGGATAAAATGGAAAACACGATTCCTAGTCATGG
TGCGCTTGCGTGTGTGTGAGTTTTTGCTTTGCCCGGACCGCCCTAACCGG
CTGGCCCATGAAACGGCGTCAGTCTTTTACAGCAGGCCGCAACAAGGCCG
TATTTGTGTGTTTTGTCATCAAGGGGGGAAAGTCACAAAACATCGCGGCA
ACATCCTTGGCAGGCCACGATTTATACGATCCCCCAAGCCCTGTGTTGTT
CCTGGCCTTCTTTGGAGTCGCGGGCGTCGACCTAGGAGTTGTTGTTCCCC
TTCTTGTAGTATCATTGCTCAGAATGTTGGAGTATTCTTTCGAATTGAAC
GTTGGGCCCAGGGGTGAATGTGTTTTCGAGCCTTACAAACGTTGGGCTAG
TCACTCACCCTGCTCAAAACATCGAGGGTATGCAGTCTTCAAGAAAATAG
TCGTGGCTTTTTCTTCGTGTTGCCCTCTTGCCCTCTTGCAGGCTGGATCG
CGCCCCCACCACGCTGTGCCGATGTCCGCTGCTTGCATGACCATGTGGGG
CGGTAGGCCCTCTCCGGATACACACCGAAAAAATATCTAGGCAGAGGCGA
TACACCTCGTGCTTCATCCCCAGTAACCAAATCGCCCTTCCCTTCCCTGC
CTCCCGACATACCCCGACGCATGGTTGCGTTCGAATCTCGCGACACAGGC
CTGCATATACAAGCGGCGATAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7613:960..5381-

>mRNA_E_fasciculatus_S2_contig7613.15780.1 ID=mRNA_E_fasciculatus_S2_contig7613.15780.1|Name=mRNA_E_fasciculatus_S2_contig7613.15780.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1545bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7613:960..5381- (Ectocarpus fasciculatus EfasUO2)
ATGGGTGGCGAAGAGCGGCACCAGCAACGGCAGCACGCGGCGGGATCGTC
AACAGCAGCCAAGGAGAACAGGCGCAAGCGAAAGAAGGGGAAGGGCGGCA
GCAGCCCGAAGCTTGGGGAACCTGGCGGTGACCACGCAAGAGGGAAAATG
GAAGGGGAGAGAGATAGGGTGGCTGAGACTCCCACTGGTGGCGCCGAACA
GCAGCAGGGTGGCAACAGCAACAAGAGCAGCGACAGCATCAACCACAAGG
ATGGCGCAGCCAGGAGCCCACAGCAGCAGCGGCAGCGGCAACAGGCCGCA
AGTTCGGCCAAGGCCACCGTGTCCGCCTCTACATCGGGAGGCAGCAGCGA
TAGATGCACAGTTGACGGTGGGAAGAAGAAGAAGAGCAAGAAGCGTCGTC
GAAAGGAAGCAGACGCCGCGGTAGCAGACGCCGCGGTAGCAGCAGCAGCA
ACAGCACCAGCACCAGGGTCCTTATCGGCAACGCCTCCTGCTGGCGATGC
TGAACAGGTATGCATACGACCCGTCGAGAGATGCAGCGATCACGGTGGGA
ACAAGAAGAAGAAGAGCAAGAGACGTCGTCGACAGGAAGCATCAGCAGCA
GCATCAGCACCAGGGCCAGCACCGACGTCTTCGTCGTCAGCAGCGCCTCC
GCCGCGCGATGCTGAACAGGTGCCACCCGTCGAGAGCGGGAGCCGCCACC
GCACCAAGAAATCCAAGAAAGCAAGGGCAAGGGAGGCGGGAAGCGATAAC
AATACCAACAACGACGACAAGATGCCGATCAGTCCCGTGAAAACGAAAGG
GTCGTCACCTTCTGGGGCAGGCACCACAACCGGGCGGGCGGCGGCGGCGG
CGGCAGGGTCTGGGTCGGGCGCTCCCAGGCTGTCGGAGCTGCAGAAGCGC
ATGCGGCAGAAACTGGAGGGCGCCCAGTTCCGCATGATCAACGAGACGCT
ATACACGTCGGAGAGCGGGGCCTCGCTCGCTAAGTTCAAGCAAGAGCCGG
AGCTATTTGATGTGTACCATCGGGGATTCCGAGAACAGGTGGAGAAGTGG
CCGGTGCATCCGCTGGACATCATCATCGACTGGCTCAAGAAGTACCCGAA
GGCGCGAGTGGCCGACTTTGGCTGCGGGGAGGCGCGCCTTGCGGCGACGG
TGCCCAACAAGGTGCACTCGTTCGACCTGGTGTCACCCAACCCGCTGGTG
ACTGCGTGCGACATGGCCAACGTCCCGATCAAGGACGCCTCGGTTCACGT
GGCCGTTTTCTGCCTCTCGCTCATGGGGACTAACCTCGCGGACTTTTTGC
GCGAGGCTCATCGGGTGCTCGTCCCGGGGGGGCTCGTGAAGGTGGCCGAG
GTGAGGAGCAGGTTCGAGGGGGAGGAGGGCGGGGTGGAGCGTTTCTTGGA
GGTGACGAAGCGGCTCGGCTTCGACACGAGGCAGATGGACCGCTCCAACA
AGATGTTCCTCCTCGCGGAGTTCAAGAAGTCCGGCCGGAAGCCGGAGAGG
GGCGTCGAGTTCGAGGCCAAGGCCTGCATATACAAGCGGCGATAG
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