mRNA_E_fasciculatus_S2_contig7610.15778.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7610.15778.1
Unique NamemRNA_E_fasciculatus_S2_contig7610.15778.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7610.15778.1 vs.
Match: DENN (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ29_9PHAE)

HSP 1 Score: 374 bits (960), Expect = 9.670e-115
Identity = 253/295 (85.76%), Postives = 258/295 (87.46%), Query Frame = 2 
Query:   26 VGAPPVWPEEAARRARRVVQSTLFPDFETFDVVSESPPQVDDFDDDDD-SALFKCSGLSGGGAEASLRDKVEAFRSSAAAASTPKRGSSGGAGTLTESIVGMYIPTAADLALRAAVAGLVASVLGRVKEFTTLFAQAGLMRFDTAGFVKAVATRGSGGXXXKNDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTADDDAAPVVVGAAAGDDGSVAEGAGGEGGLCGVPGTELCMELVRTRAFAALLSDEVFADVDLETVQGELRLHSRQIRKSAPS 907
            VG P VWPEEAARRARRVVQSTLFPDFETFDVVSE+PPQVDDFD     SALFKCSGLSGGGAEASLRDKVEA R+SAAAAS  +RG SGGAGTLTESIVGMYIPTAADLALRAAVAGLVASVLGRVKEFTTLFAQAGLMRFDTAGFVKAVATRG GG   K DA            XXXXXXXXXXXXXXXXXXXXXXXXXXXX       T DD+AAPVVVGAAA DDG+VAEGAGGEGGLCGVPGTELCMELVRTRAFAALLSDEVFADVDLETVQGELRLHSRQIRKSAPS
Sbjct:  694 VGVPLVWPEEAARRARRVVQSTLFPDFETFDVVSETPPQVDDFDXXXXXSALFKCSGLSGGGAEASLRDKVEACRTSAAAASASRRGISGGAGTLTESIVGMYIPTAADLALRAAVAGLVASVLGRVKEFTTLFAQAGLMRFDTAGFVKAVATRGIGGGS-KTDAGGGNSVLVGSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXSN-----TVDDEAAPVVVGAAAVDDGNVAEGAGGEGGLCGVPGTELCMELVRTRAFAALLSDEVFADVDLETVQGELRLHSRQIRKSAPS 982
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BLAST of mRNA_E_fasciculatus_S2_contig7610.15778.1 vs.
Match: RGS (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDP3_ECTSI)

HSP 1 Score: 349 bits (896), Expect = 9.960e-103
Identity = 250/295 (84.75%), Postives = 253/295 (85.76%), Query Frame = 2 
Query:   26 VGAPPVWPEEAARRARRVVQSTLFPDFETFDVVSESPPQVDDFDDDDDSALFKCSGLSGGGAEASLRDKVEAFRSSAAAASTPKRGSSGGAGTLTESIVGMYIPTAADLALRAAVAGLVASVLGRVKEFTTLFAQAGLMRFDTAGFVKAVATRGSGGXXXKNDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTADDDAA-PVVVGAAAGDDGSVAEGAGGEGGLCGVPGTELCMELVRTRAFAALLSDEVFADVDLETVQGELRLHSRQIRKSAPS 907
            VGAPPVWPEEAARRARRVV+STLFPDFETFDV       VDD D DDDSALFKCSGLSGGG EASLRDKVEA R+SAAAAS P+RG SGGAGTLTESIVGMYIPT ADLALRAAVAGLVASVLGRVKEFTTLFAQAGLMRFDTAGFVKAVA  G G    K DA XXXXXXXXXXXXXXXXXXXXXXX          XXXXXXXXXXXXX        PVVVGAAA DDGSVAEGAGGEGGLCGVPGTELCMELVRTRAFAALLSDEVFADVDLETVQGELRLHSRQIRKSAPS
Sbjct: 1159 VGAPPVWPEEAARRARRVVKSTLFPDFETFDV-------VDDLDXDDDSALFKCSGLSGGGVEASLRDKVEACRTSAAAASAPRRGVSGGAGTLTESIVGMYIPTTADLALRAAVAGLVASVLGRVKEFTTLFAQAGLMRFDTAGFVKAVAICGGGS---KTDAGXXXXXXXXXXXXXXXXXXXXXXXTGSAPSGVSEXXXXXXXXXXXXXXXXXXXXXPVVVGAAAVDDGSVAEGAGGEGGLCGVPGTELCMELVRTRAFAALLSDEVFADVDLETVQGELRLHSRQIRKSAPS 1443
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7610.15778.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
DENN9.670e-11585.76domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
RGS9.960e-10384.75domain-containing protein n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7610contigE_fasciculatus_S2_contig7610:1910..7107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1793
Hectar predicted targeting categorysignal peptide
Exons6
Cds size585
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7610.15778.1prot_E_fasciculatus_S2_contig7610.15778.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7610 2793..5645 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842423.4498868-UTR-E_fasciculatus_S2_contig7610:1909..27921696842423.4498868-UTR-E_fasciculatus_S2_contig7610:1909..2792Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7610 1910..2792 -
1696842423.4976416-UTR-E_fasciculatus_S2_contig7610:5645..57021696842423.4976416-UTR-E_fasciculatus_S2_contig7610:5645..5702Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7610 5646..5702 -
1696842423.5062962-UTR-E_fasciculatus_S2_contig7610:6265..64121696842423.5062962-UTR-E_fasciculatus_S2_contig7610:6265..6412Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7610 6266..6412 -
1696842423.5149045-UTR-E_fasciculatus_S2_contig7610:6986..71071696842423.5149045-UTR-E_fasciculatus_S2_contig7610:6986..7107Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7610 6987..7107 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842423.4594994-CDS-E_fasciculatus_S2_contig7610:2792..28431696842423.4594994-CDS-E_fasciculatus_S2_contig7610:2792..2843Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7610 2793..2843 -
1696842423.4685802-CDS-E_fasciculatus_S2_contig7610:3453..35481696842423.4685802-CDS-E_fasciculatus_S2_contig7610:3453..3548Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7610 3454..3548 -
1696842423.4804597-CDS-E_fasciculatus_S2_contig7610:4216..45501696842423.4804597-CDS-E_fasciculatus_S2_contig7610:4216..4550Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7610 4217..4550 -
1696842423.4891098-CDS-E_fasciculatus_S2_contig7610:5540..56451696842423.4891098-CDS-E_fasciculatus_S2_contig7610:5540..5645Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7610 5541..5645 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7610.15778.1

>prot_E_fasciculatus_S2_contig7610.15778.1 ID=prot_E_fasciculatus_S2_contig7610.15778.1|Name=mRNA_E_fasciculatus_S2_contig7610.15778.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=195bp
MYIPTAADLALRAAVAGLVASVLGRVKEFTTLFAQAGLMRFDTAGFVKAV
ATRGSGGGGSKNDAAYNAAGGGNSTLLGSGGAGASAATGSAPSGFSEGSG
ASGGGHPAGSNTADDDAAPVVVGAAAGDDGSVAEGAGGEGGLCGVPGTEL
CMELVRTRAFAALLSDEVFADVDLETVQGELRLHSRQIRKSAPS*
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mRNA from alignment at E_fasciculatus_S2_contig7610:1910..7107-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7610.15778.1 ID=mRNA_E_fasciculatus_S2_contig7610.15778.1|Name=mRNA_E_fasciculatus_S2_contig7610.15778.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5198bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7610:1910..7107- (Ectocarpus fasciculatus EfasUO2)
GGCGAAGGGAGGGGAAGAGGGGGGGGTGGGGGCTCCGCCTGTTTGGCCCG
AGGAGGCGGCACGGCGGGCTAGGCGCGTGGTGCAGTCGACGCTGTTCCCT
GACTTCGAGACCTTCGACGTGGTGGGTATAGCATTTTTTTTTGGTTGTTT
CGCGTCATCTTGTTTTTTCATTTATTTTTTATTTTTTGTGTGTGTGTTTT
TTTCCTTACAAAGAACATAACACATAAATACATCTCTTCCACAGATATAA
GATTCCGTGTTTTTTTTTGTGTTTTTTTTTGTATCTTATCCTAGCGTGTT
CTGGTGCCGTCGCGTTTAGTCTTTGCCTCTAGGATTCGAGACCTGTGATT
TTCGTTTGTGTTTTGTTTTTATTGTGAGCATCGACAGCGCTGACCAGCTG
GCAAATGAAAAGGTGTCAGGCTCAGTCCGGTTGAAAACACAGGATGTTTC
TTAAGGCAATGATCTGGAACCCAAGAGGGGATGTCATGAGGGAGGCTATG
CTACTGTGCGGATGAAAGCCAGATACTGTGTGTGTGTTTTTTTTTATTAT
AGAGTTAGTGAGTTATCGCGTGTGCGTGTTCTTTACTTCCTGCTCGTGCT
GCCGCCGAAGCTGACGCTTGCCTCCACGTGTTGCTCATCTCGCTGCAACT
GCCACGCCGTCGCTGCATGGCGTTGGTTCGTTTCCCGTCCGCTAGGTTTC
TGAATCCCCTCCACAGGTGGACGACTTCGACGACGACGACGACTCGGCGC
TGTTTAAGTGCAGCGGTCTTAGCGGCGGGGGTGCCGAGGCCTCTCTCCGG
GACAAAGTCGAAGCTTTTCGATCGTCTGCTGCCGCGGCTTCGGTAAGCGT
TAGTTCTCGTCGTTGTTGCTTTAGGTTGTGTATGTTGTTGTCGGTGGTCG
GTGGTCGTTATTGTTGTTGTTGTTGCTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGCATGTGCATGCCACCATCCACCATAGCACTGCAGTAGTGGTCCTG
CTATCAAATGTCGGTGCGATCCACCCGACTTACACGCCCCATTTCACGGG
CAATTTCGCCGGCATGATGGCGGGCAACCGGCATGATTATTCAGAGCATG
AAACAACTTGAAATGTTCCATCTGCGCCAGACGATTTCACCGGGGCATTA
TACAGCCAGGGTAACCGGTATCATTCGACCGGCGTTATTCCGGGACCACT
ACAGATGTATTCTGCCTCCTCGGGAAACACCGATACCTTTCACTTTTTTT
TTTTGTTGGCTTTACCAATCAACCTTAATCCAAAGGCGCGCCATCGTTGT
CCTTGTTACAAACTATGGCACGCACTGCACCATCCACCCCCCGTCCATAC
TAGCACTAAAACTCTGTCCAACGCCCGTCCACACCCTAACTTTCCCAACG
AGCAGACTCCAAAGAGGGGAAGCTCAGGCGGTGCCGGCACTCTGACCGAG
TCTATCGTCGGCATGTACATACCCACGGCGGCGGATCTAGCGCTCAGGGC
GGCGGTGGCGGGACTGGTGGCTTCTGTCCTCGGACGAGTGAAAGAGTTCA
CGACGCTCTTCGCGCAGGTGAGACGCGAAGGGAGGGGCGTATCAAAGAGA
GAGGGAGGGGGGGGAGGGGGTACTCATGGTTTGCACGCCTTAGTTGTTGA
CCAGGGGGTAGGCGGTACTGTAGTGGTCTGTGTATATGTAGGGCCTCATA
GATGGTGGTGAGGAGTTTGGCCGGCCTTGCCTTACACCGGGCAACCGACC
CTATTCAGAGTATGGGATAAGCTGGACATCCCTTCCTTGTGTTATGTTGC
GCCTTTTCACCGGCCTCGTACAGGGCGACCGGCCATGTTCACGCGTCCTT
CTTAAAACGGGACTACTGTTGTACCATGGGTTCAGGTTGGGGCTTGGGGA
CGGCGGGAGAGTCGTCCGCTGTCGTGGTTCGATAGACAAACCCGTGTAAA
TTGTACACTCGGAGAAGCGGGAAATTCCGCCGTAATGCGTTTCGTGAGTG
TTGCTGTCGTATCGAGGAACCCTGTGTCGCTGCCGTCGGCAGTTGATTCC
GCGTCCCTGTCTTGATTTGGAGGCCGGGTCCGTGGCCTTTGCAGCGGTAC
AAGGCTCGGGTTACGTGGGTGAAGTAGGGGCCTTCGTGACGATTTTTTCT
TCTGCTGTTGTAGTTGAAAGGCCAACCGCTTTTATCGACGCTTTACCTCC
CGTGAATTTTAGACGCTGCTCACCTGTTTTCCCATGCCCCCGTCTACCTA
ACCCCTCGCTTGAATTAGAGCGCCGTGGCGTTGTATATCGCCAGAATTTT
TGTTCGGTAGCGATTCCCTACTCTTGCCCACGCGCGTGCGTGTCTTCGTT
GAAAGTACCGACGTCCTACCCCTCCCCACCCCTTCCGCTCTATTGCGCTG
ACGCCCGCTACGCCGCTAATTTTCGCCCGCTCTGCTCTCTCCTTGCACCA
AACAACACCGCGGGACGAATCGCCTGGGACCGACGCATACGTCCCCGCAA
TTTCAACAATTGGACACCCCGGGGGGCGCGTGTTCCACAAAACCAACTTG
TCGGCAGGCCGGCCTGATGCGGTTCGACACGGCGGGCTTCGTGAAAGCCG
TCGCCACTCGAGGAAGCGGAGGCGGCGGCAGCAAGAACGACGCCGCCTAC
AACGCTGCCGGCGGCGGCAATTCCACGCTTCTCGGCAGCGGTGGGGCGGG
AGCATCGGCAGCGACCGGATCGGCTCCTTCGGGGTTTTCGGAAGGATCGG
GGGCGTCCGGCGGGGGTCACCCGGCGGGGTCGAACACGGCGGACGATGAC
GCCGCTCCGGTTGTGGTCGGGGCTGCAGCCGGGGATGACGGTAGCGTTGC
CGAGGGTGCCGGTGGCGAGGGTGGCTTGTGTGGAGTTCCAGGTGAGAAAA
AGGGATGTTGGGTGTTTGGGGCGGGGTGTGTGTTGTTGTTGTTGTTGTTG
TTGTTTCTCACATTAGCTCTGAAAAAAAGAAGATGGGGAGCCCGTGGTCT
CAAAACCCGGCATACACGACCCCACGAAGAAACAGAAATGTGTGTGTTGG
GGGGGGCGTACACTTATGTTTTTCATGCTTGAGCTGTTTAGACCATTGGC
CACGCGTCCTCGGAACGATGGATCATTGTTTCCGCAGGACCGATCGCCGA
TGGCCAATTGTTCCTTCCTGCTTTGCGCTTGAGGGGGGGTTCATGTCGAT
TCGGATTGACAAAGACACTGTGGCTTCCAGAGTCACCCGAACGCGTGTCG
TGTCTTCTATTCCGCCGGATTGTACCTGGGTCTCGGTGTTGGCGGTGGCG
GTGGCTTTGACGAGGCGGCTGCACTCAGCGCAATGAAATCGCGGATGGTC
ATTTTCCACTGCGATCGTTTGTCGAAGGCCGAAGGCATTGTCCAACCGCC
ATCATGTCTGTATATGTCGTAGCACGCATCCTGTACGATTGTTCCCTCAC
TGGGCGGAATAACATTTCCGGGTTGCCAGAGAAGGAAGACAACTCCGTTC
GTGACTGCCCCCCCCCCCCCATGTGATCCTTTTCCGCCGTACGTCTGCAA
TGATAATAGGCACGGAGTTGTGCATGGAACTGGTTCGCACACGCGCGTTT
GCAGCGCTTCTGTCGGACGAGGTCTTCGCGGACGTCGACCTGGAGACCGT
CCAGGTGAAACTGCCGCTTAACAGCAGCGTTGGTGTCGTCATCATGTTGT
TGGTTGGTTCTCCCTCTCCTTGACGTCTCATGTTCTGAGTGTCGTTTGTA
GGCATCAGCTGGGGCTGTCCGTTTTCTTTCGCCGCCATTTGTTGCCCGGG
GAGTGAGACGAAAAACGCGAGAAGGTGCTTCTCGAACCCGTAAAAGATCA
GAAGTCACTGTGCCCCTTTCGCAGTAGTAGTATTCCACAGTCGTGACGAC
TCGGTTGGATCGAGTGGCACATTTCCCGAATCACCCTGTAACCCACTTAT
ATCCCGTTGGGGTTGTTTCTAAACAGTACCGTGAACATGTCGTCGCGAAT
GACGTACACAGCTGCTTCGGGACCCTGCTGATACAGCCCATTTTTTTTTA
AAGAAGAAATACAAGTACAAACACCGAAAGACTACCCGTTCGAGAAAAAA
GCCACAGTCAAAGGGGATGTGTTGAAGTCTTTACAATGAATGGTAAAAAA
CCGACTGAAGCCCGTTTTTTTTTTATCACCCACCGCGCCGCTGACTTTTG
GGTCTCGTGATTGTTTTGCTGCGCGTTACTCGTTGGCGCTGCTTTCCGAA
AATCGACCCCGCAGGGAGAGCTTCGATTGCACTCGAGGCAGATAAGGAAA
TCGGCCCCGTCCTAGCCAGGAAGCAGCGTCAAGCAGCATGTTTCCGAAGG
AAGGCGTTTGGCTTTGCCATGGTACGGCAGCAGTAGACCCGACCTGTTGT
TTGGAACGCTTGTATTTCGGAGTGACGGGAGGGTGGTGCTCGGTCTCTCA
TCGCTCCTCAGGCACTGAGAACAGTCCGGGGTTCGTCCGTAGCGCGGGCA
TGCGCTGTGCCGATTCGCCCCCCCTATTGCCACCACCACTCCTATTTGTT
TTTCACAAAGTGTAGAACGACTCGATTCTTTGATCTTTGCCAAGAGCTTT
TCACCAGCGCTATGGATCCCAACCAATCGGCCCACGACTGCTGTGGCTTG
ATGCGAAACATGCGATGCAACAGCAGTCAGTCAGTTGATGCGAACGCAGC
AAGCATGGCCCAGGGCTGCTATTATAGCGTGTTTTTGCAGAGGGTTCACC
TCTTGGATCCTTCATCGTTGCACTACCTTTCGCACCCAGAGGTGACGGGA
AGTAGCTTCGGAGTTACGGCCTGCTTTAGTTGTCGTTCGTTGCGGTATCG
TAGCCCCGGTTTTCCCACCCTGAGAAGAGTATCATAGGCGGAATGCTTCG
GTCTGGCGGGACTGTTGAGAAGGGGTTCAGCAAGACGCGCGGCGTTGCGA
CGACTGGTTGGTGAGAGCACCGTTGGTTTCTTCGCCATCGTGTTTCGTGT
TTTGTGATCACTTAGCGGTGTTTTCTGCCGCCGCAAATCACTTCTTCACG
GTCCACAACAACTTTGGGCGACTCGTGGATACATTCACACAGCGTTCGAC
GAGATGGCGAGGCGTCGGAACGATCGATAGGGGGACTGACCTTCACACGC
CGTTTTCGCCTCTTGGCACAAACCCAAACAACCGTAACAAAGCACCGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7610:1910..7107-

>mRNA_E_fasciculatus_S2_contig7610.15778.1 ID=mRNA_E_fasciculatus_S2_contig7610.15778.1|Name=mRNA_E_fasciculatus_S2_contig7610.15778.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=585bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7610:1910..7107- (Ectocarpus fasciculatus EfasUO2)
ATGTACATACCCACGGCGGCGGATCTAGCGCTCAGGGCGGCGGTGGCGGG
ACTGGTGGCTTCTGTCCTCGGACGAGTGAAAGAGTTCACGACGCTCTTCG
CGCAGGCCGGCCTGATGCGGTTCGACACGGCGGGCTTCGTGAAAGCCGTC
GCCACTCGAGGAAGCGGAGGCGGCGGCAGCAAGAACGACGCCGCCTACAA
CGCTGCCGGCGGCGGCAATTCCACGCTTCTCGGCAGCGGTGGGGCGGGAG
CATCGGCAGCGACCGGATCGGCTCCTTCGGGGTTTTCGGAAGGATCGGGG
GCGTCCGGCGGGGGTCACCCGGCGGGGTCGAACACGGCGGACGATGACGC
CGCTCCGGTTGTGGTCGGGGCTGCAGCCGGGGATGACGGTAGCGTTGCCG
AGGGTGCCGGTGGCGAGGGTGGCTTGTGTGGAGTTCCAGGCACGGAGTTG
TGCATGGAACTGGTTCGCACACGCGCGTTTGCAGCGCTTCTGTCGGACGA
GGTCTTCGCGGACGTCGACCTGGAGACCGTCCAGGGAGAGCTTCGATTGC
ACTCGAGGCAGATAAGGAAATCGGCCCCGTCCTAG
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