mRNA_E_fasciculatus_S2_contig7607.15775.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7607.15775.1
Unique NamemRNA_E_fasciculatus_S2_contig7607.15775.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7607.15775.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR6_9PHAE)

HSP 1 Score: 328 bits (840), Expect = 4.380e-107
Identity = 184/199 (92.46%), Postives = 189/199 (94.97%), Query Frame = 1 
Query:  181 MRFAAAGASATLVLGALAPPARAFVAQAPTGGATRFSRSSGGDVLVAGRRASVGRRPSEMAAATKMAIAGPGDDAKVVVCGPPGGIAGLIAGRLTAAGGIREVVLADETETLEQQLLGAKVVVGSSDGGPGAEEAPPGLADEVVSALPASTDYLIWVDSPEARASAKVAKLEIGVLGSLLGGGFKESLEAVRSVEGGVR 777
            MRFAAA ASATL L  LAP A+AFVAQAP GGATRFSRSSGGDVLVA RRASVGRR SE+AAATKMAIAGPGDDAKVVVCGPPGGIAGLIAGRLTAAGGIREVVLADETETLEQQLLGAKVV+GSSDGGP AEEAPPGLADEVVSALPAST+YLIWVDSPEARA+AK AKLEIGVLGSLLGGGFKESLEAVRSVEGGVR
Sbjct:    1 MRFAAA-ASATLALATLAPTAQAFVAQAPAGGATRFSRSSGGDVLVARRRASVGRRRSELAAATKMAIAGPGDDAKVVVCGPPGGIAGLIAGRLTAAGGIREVVLADETETLEQQLLGAKVVIGSSDGGPDAEEAPPGLADEVVSALPASTEYLIWVDSPEARAAAKAAKLEIGVLGSLLGGGFKESLEAVRSVEGGVR 198
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BLAST of mRNA_E_fasciculatus_S2_contig7607.15775.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWZ9_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.070e-19
Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = 1 
Query:  376 MAIAGPGDDAKVVVCGPPGGIAGLIAGRLTAAGGIREVVLADETETLEQQ 525
            MAIAGPGDDAKV+VCGPPGGIAGLIAGRLTAAGGIREVVLADETETLEQQ
Sbjct:    1 MAIAGPGDDAKVMVCGPPGGIAGLIAGRLTAAGGIREVVLADETETLEQQ 50
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7607.15775.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized4.380e-10792.46protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.070e-1998.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7607contigE_fasciculatus_S2_contig7607:3276..6379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score95.5
Seed ortholog evalue3e-17
Seed eggNOG ortholog2880.D7FWZ9
Model size778
Hectar predicted targeting categorychloroplast
Exons4
EggNOG OGs2BY4X@1,2SKQ1@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_003740.1
Cds size597
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842423.079706-UTR-E_fasciculatus_S2_contig7607:3275..34551696842423.079706-UTR-E_fasciculatus_S2_contig7607:3275..3455Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7607 3276..3455 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842423.092169-CDS-E_fasciculatus_S2_contig7607:3455..36191696842423.092169-CDS-E_fasciculatus_S2_contig7607:3455..3619Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7607 3456..3619 +
1696842423.1053267-CDS-E_fasciculatus_S2_contig7607:4872..50531696842423.1053267-CDS-E_fasciculatus_S2_contig7607:4872..5053Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7607 4873..5053 +
1696842423.116571-CDS-E_fasciculatus_S2_contig7607:5703..59131696842423.116571-CDS-E_fasciculatus_S2_contig7607:5703..5913Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7607 5704..5913 +
1696842423.1270173-CDS-E_fasciculatus_S2_contig7607:6337..63791696842423.1270173-CDS-E_fasciculatus_S2_contig7607:6337..6379Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7607 6338..6379 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7607.15775.1prot_E_fasciculatus_S2_contig7607.15775.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7607 3456..6379 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7607.15775.1

>prot_E_fasciculatus_S2_contig7607.15775.1 ID=prot_E_fasciculatus_S2_contig7607.15775.1|Name=mRNA_E_fasciculatus_S2_contig7607.15775.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=199bp
MRFAAAGASATLVLGALAPPARAFVAQAPTGGATRFSRSSGGDVLVAGRR
ASVGRRPSEMAAATKMAIAGPGDDAKVVVCGPPGGIAGLIAGRLTAAGGI
REVVLADETETLEQQLLGAKVVVGSSDGGPGAEEAPPGLADEVVSALPAS
TDYLIWVDSPEARASAKVAKLEIGVLGSLLGGGFKESLEAVRSVEGGVR
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mRNA from alignment at E_fasciculatus_S2_contig7607:3276..6379+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7607.15775.1 ID=mRNA_E_fasciculatus_S2_contig7607.15775.1|Name=mRNA_E_fasciculatus_S2_contig7607.15775.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3104bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7607:3276..6379+ (Ectocarpus fasciculatus EfasUO2)
CGCAGAGCTTCAGGATAGAGCATCAACGCAAGGCAAGACGAGGGCAAAGG
GGTCAGAAGGCAAGCCAATCGCACGTGGTGCTTTGACCACACACAGGAGA
GCGAAGGGTAGGGTCTCCCCACGTGCCTGAGCAGCGGAGGGGCCGGAACT
AAGGACGCTTGCATCAGATCACTGCCAAGTATGCGGTTCGCTGCCGCCGG
TGCCAGCGCGACACTGGTCCTCGGCGCATTGGCACCACCGGCGCGAGCCT
TCGTGGCGCAGGCTCCGACGGGAGGTGCCACGAGATTCTCACGGAGCAGT
GGCGGCGATGTGTTGGTGGCAGGGAGGAGGGCGAGCGTCGGCAGGTGGGT
GGGTGTGTGTGTGTGCTGCCAACATGAGTCGGTGCTGTTGCTGCTGCTGC
TGCACAAGAGCTGCAAAACATGCACGCCCCCCCCTGTGGCTAACACGAAG
ACTCTGCATGCTTGGCGTAGTCCAGCAGCGAGGCCCGAGACTCGTGCCTT
GTTTCTGTAATGACCAGCAGATGTTCTCCAATGCGTCCGGGCGAGCGGGT
TGAGCTACCTCTGCGATATTGAGTATCCATAGGTTTCAATTGGCACACGG
CACACATGCATGTTCCCGACGAGAAAAAGCGGCGCAACCGCCTCCAACAC
CCCCACACGCTCCTCCTGCTAACGCGCACAACTTCTCCGCCGCACGGCAC
GGCACTGGCACTTCCTATAATCATATGTTAGGCCCGTGAGGGTCGTAGTA
CTTCGGTCCCGCTGCTTCTCTTGTTTCCGCTAGTCCAGATTTTTCCTTCA
ATCGCTTTCGTCCCATCTCAACACTACTACATACTGCTGTGTGTTTGTAG
CTGCTCTGCATGACGTGTCCGCTGTACAGCAGTAGTTTGTAGATACAGAC
TTTGGGCGTGTGCCCGAGGCCCTCGAGGTTGCAGAGAGGCGACTCGGCGA
CTTGCTGTTTGCGGGGCAGATCGTCCTCTCTCGTGAGCGTTGGTGACGCG
TGGGGTGGCGCAGCCACGCGCAGCGTGTTTGGACCCGCAGGTAGTGTATC
CGCGCGCGGAGTCTTTGCAGCACAGCAGTTCGAAAGCTGCGCCGCCTGTA
GCAGCAGCATCAGCCCCGGTGGCCTTCTGCTCGCGATCGCGCTGTTCTAT
ACTACAAGATTAGAGAGAGAGGGGGGTGGGGGGGCGTGTGTGCGCCGTTC
CAGTGTAATCATAGTGGTTGCATGCCGAAGGACCGACGGTGCCCCACGAG
ACCCAACACCTTCGTCGACTGTGACCTATGCAAACGACAGCCGTGGTGTC
GTACATGCAAACCAATCACGCTAAGAAGGAATAGCGCGCACCCGAATGCC
TCAGTAACAAGAAAACCGATCCGCCAAAGACAAAAAAACGTTCTGCCCAA
AACACCCATCATAATTTAATTAAAAAAAAAAAAAAAGCTTCAATTGAGTC
TGTGGAGTTAAATAGTGGAAAGACGCTTCTATGGAGGACGCAACAATATA
TATCAAATACGGTGTGCGTCCTTACGTAGAGGTTCGACTGTTCTCAACTC
GAGAGGGTGTTGTTTCACCCCCACCCGCCCCCCACCCCCGTGGATAGGAG
ACCGTCTGAGATGGCGGCGGCAACGAAGATGGCGATAGCCGGGCCTGGAG
ACGACGCCAAGGTCGTGGTGTGCGGCCCTCCTGGCGGCATCGCGGGCCTG
ATCGCCGGCAGGCTCACGGCGGCGGGTGGGATAAGGGAGGTCGTCCTCGC
CGACGAGACCGAGACCTTGGAGCAGCAGGTGGGGGCGGCGCGTGCCGTGG
GCCTGAGCCCTGTGGGCTTGTCGAGGGGGCGTACTCTTATGTGTTTGCAT
GCCGTTAGCTTTTAGATCGTGCACCACGCGTCCTCAAGAGAACCGGGGCA
TTGGAGTACTGTAGGTGTGGTTTGCGTGTTGCTGTTCCTGTTGACATCGG
TCGGGCCAACCATGAACATCTACAGGCCTTTGACAGCAGTACTATACATG
CATTCATGTTTCTCCAAGGTGAGCGCAGGGAGACGAAGTTTCCTAGCTTC
CAGCCCTCGTGTCGGAGGTGAACCGCGAACCTGGTCCTACCGCTCCACCG
GTACCCCGTGTGGCATACCAACGTTTGTGCCCGGAGCAAGGGGAAAGTTC
CGAGCTTTGTATACGCTCCCCTCTTTCTTTCCGCCGTCCTGCTTTTTTTC
TTGGCGTATTTGTCCTCTTGGTCTTCTTTTTTTTTCCCCATGACTGCCTC
TCTCTCTGTCTGTCTGTCTGTCTGCCTCCCTCTCTGCCGCCTTCTAACCG
TTGCCCGTCTATTTTCTTCCCCTCTCTGTCCGTCCGTTTTGTCTGTCTGC
CTATGAACCCACCGTTCGGGATATCAACGCAAAACCCAACAATAACAACA
ACAAACAACCATACAAACCAACACACAGCTCCTAGGCGCCAAGGTGGTGG
TCGGATCGTCCGACGGGGGGCCCGGCGCAGAGGAGGCCCCCCCCGGCCTC
GCAGACGAGGTCGTTTCGGCGCTCCCCGCCTCCACCGACTACCTCATCTG
GGTTGACTCGCCCGAGGCAAGGGCGTCGGCCAAGGTCGCCAAGCTCGAGA
TCGGCGTCCTCGGCAGCCTTCTGGGAGGAGGGTTTAAGGTGGGGGGGGGG
TGACGCCTAGAAGTTCTGGTCCGCGCACGGTTTTTTGGTCAAGAAATGTG
ATCCAGACGGGAACACCGGCGCCGCAGTGACCGAGAGATAGCAGGGATGG
GAAGGAAGGAAGAGCGGATATTACAGCGGCTTGGGTTTTCAACGTGTTGC
CGGGGGTGATGTGATGGTTTTCGCCCTTCCGCGACTTGCCACCCGGCGTT
TGACGATGCCCGATGCCTCCTTTGCTGTGTGTATCGCTCGCGATACATGG
GTCGCGCCACAAGCTGCGGCTGGTGGTACGGTATGGTATTGGTGCGGTAC
GGGTGTACTGCTGTGCCTGTTTCGTTATTTCCCTGCTCTATGTGTACCAC
CAAGCGAATCGCTCCTCTCGCCTTTGTATGGTTGTTCTTGCTGTTGTTTC
GCCTCCGTACAGGAGTCGCTGGAGGCGGTGCGCAGCGTGGAGGGGGGCGT
CAGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7607:3276..6379+

>mRNA_E_fasciculatus_S2_contig7607.15775.1 ID=mRNA_E_fasciculatus_S2_contig7607.15775.1|Name=mRNA_E_fasciculatus_S2_contig7607.15775.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=597bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7607:3276..6379+ (Ectocarpus fasciculatus EfasUO2)
ATGCGGTTCGCTGCCGCCGGTGCCAGCGCGACACTGGTCCTCGGCGCATT
GGCACCACCGGCGCGAGCCTTCGTGGCGCAGGCTCCGACGGGAGGTGCCA
CGAGATTCTCACGGAGCAGTGGCGGCGATGTGTTGGTGGCAGGGAGGAGG
GCGAGCGTCGGCAGGAGACCGTCTGAGATGGCGGCGGCAACGAAGATGGC
GATAGCCGGGCCTGGAGACGACGCCAAGGTCGTGGTGTGCGGCCCTCCTG
GCGGCATCGCGGGCCTGATCGCCGGCAGGCTCACGGCGGCGGGTGGGATA
AGGGAGGTCGTCCTCGCCGACGAGACCGAGACCTTGGAGCAGCAGCTCCT
AGGCGCCAAGGTGGTGGTCGGATCGTCCGACGGGGGGCCCGGCGCAGAGG
AGGCCCCCCCCGGCCTCGCAGACGAGGTCGTTTCGGCGCTCCCCGCCTCC
ACCGACTACCTCATCTGGGTTGACTCGCCCGAGGCAAGGGCGTCGGCCAA
GGTCGCCAAGCTCGAGATCGGCGTCCTCGGCAGCCTTCTGGGAGGAGGGT
TTAAGGAGTCGCTGGAGGCGGTGCGCAGCGTGGAGGGGGGCGTCAGG
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