mRNA_E_fasciculatus_S2_contig760.15769.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig760.15769.1
Unique NamemRNA_E_fasciculatus_S2_contig760.15769.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig760.15769.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV9_ECTSI)

HSP 1 Score: 295 bits (754), Expect = 8.370e-94
Identity = 149/166 (89.76%), Postives = 152/166 (91.57%), Query Frame = 1 
Query:  544 KGIPTGEHLLDMFKLEHFERVGGGGGEAYFGVGTSSGPQFEEQPGEDEGGFRSAEAECLVTRRMCNYMPGTMHGGAIAVAAEEIARRCRPAPLPMDTVPVPGNPRVQYMEVHYMSPIKRRAGLAAVSAASGTGKNITRVGLSEVGGTEGGVLSAEAVLLWSQAGGG 1041
            KGIPTGEHLLDMFKLE FERVGGGG EAYFGV TSS PQ EEQ G+DEGGFRSAEAECLVTRRMCNYMPGTMHGGAIAVAAEEIARRC PAP PMD VP+PGNPRVQYMEVHYMSPIKRRAGLAAVSAAS  GKN+TRVGLSE GGTEGGVLSAEAVLLWSQ G G
Sbjct:   85 KGIPTGEHLLDMFKLEQFERVGGGGDEAYFGVATSSDPQVEEQAGDDEGGFRSAEAECLVTRRMCNYMPGTMHGGAIAVAAEEIARRCPPAPFPMDAVPIPGNPRVQYMEVHYMSPIKRRAGLAAVSAASEIGKNVTRVGLSEAGGTEGGVLSAEAVLLWSQRGEG 250
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BLAST of mRNA_E_fasciculatus_S2_contig760.15769.1 vs.
Match: 4HBT (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ82_9PHAE)

HSP 1 Score: 292 bits (748), Expect = 2.760e-91
Identity = 148/166 (89.16%), Postives = 151/166 (90.96%), Query Frame = 1 
Query:  544 KGIPTGEHLLDMFKLEHFERVGGGGGEAYFGVGTSSGPQFEEQPGEDEGGFRSAEAECLVTRRMCNYMPGTMHGGAIAVAAEEIARRCRPAPLPMDTVPVPGNPRVQYMEVHYMSPIKRRAGLAAVSAASGTGKNITRVGLSEVGGTEGGVLSAEAVLLWSQAGGG 1041
            KGIPTGEHLLDMFKLE FERVGGGG E YFG  TSSGPQ EEQ GE EGGFRSAEAECLVTRRMCNYMPGTMHGGAIAVAAEEI+RRC PAP PMD VP+PGNPRVQYMEVHYMSPIKRRAGLAAVSAASG GKN+TRVGLSE GGTEGGVLSAEAVLLWSQ G G
Sbjct:  199 KGIPTGEHLLDMFKLEQFERVGGGGDEEYFGGATSSGPQVEEQAGEVEGGFRSAEAECLVTRRMCNYMPGTMHGGAIAVAAEEISRRCPPAPFPMDAVPIPGNPRVQYMEVHYMSPIKRRAGLAAVSAASGIGKNVTRVGLSEAGGTEGGVLSAEAVLLWSQRGEG 364
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig760.15769.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized8.370e-9489.76protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
4HBT2.760e-9189.16domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig760contigE_fasciculatus_S2_contig760:5371..6931 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score298.5
Seed ortholog evalue3e-78
Seed eggNOG ortholog2880.D7FYV9
Model size1549
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2EY9U@1,2SZTY@2759
Ec32 ortholog descriptionHotDog domain
Ec32 orthologEc-19_002660.1
Cds size783
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842422.3666897-UTR-E_fasciculatus_S2_contig760:5370..56401696842422.3666897-UTR-E_fasciculatus_S2_contig760:5370..5640Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig760 5371..5640 +
1696842422.4017308-UTR-E_fasciculatus_S2_contig760:6435..69311696842422.4017308-UTR-E_fasciculatus_S2_contig760:6435..6931Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig760 6436..6931 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842422.3797784-CDS-E_fasciculatus_S2_contig760:5640..64031696842422.3797784-CDS-E_fasciculatus_S2_contig760:5640..6403Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig760 5641..6403 +
1696842422.3903267-CDS-E_fasciculatus_S2_contig760:6415..64351696842422.3903267-CDS-E_fasciculatus_S2_contig760:6415..6435Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig760 6416..6435 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig760.15769.1prot_E_fasciculatus_S2_contig760.15769.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig760 5641..6435 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig760.15769.1

>prot_E_fasciculatus_S2_contig760.15769.1 ID=prot_E_fasciculatus_S2_contig760.15769.1|Name=mRNA_E_fasciculatus_S2_contig760.15769.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=261bp
MHSRALCTGQTITQRHTGSRDCHSQGYIQIEKSIATSHFCLPLFHSNILG
VDCAAPGVILFVRCRAIYHHSAYPCLTSPLPSTRACVQLIRKGIPTGEHL
LDMFKLEHFERVGGGGGEAYFGVGTSSGPQFEEQPGEDEGGFRSAEAECL
VTRRMCNYMPGTMHGGAIAVAAEEIARRCRPAPLPMDTVPVPGNPRVQYM
EVHYMSPIKRRAGLAAVSAASGTGKNITRVGLSEVGGTEGGVLSAEAVLL
WSQAGGGGVH*
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mRNA from alignment at E_fasciculatus_S2_contig760:5371..6931+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig760.15769.1 ID=mRNA_E_fasciculatus_S2_contig760.15769.1|Name=mRNA_E_fasciculatus_S2_contig760.15769.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1561bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig760:5371..6931+ (Ectocarpus fasciculatus EfasUO2)
AGGCCGAGCGCAACGTTGTTGCTCGACGTGACTCTGAGCGGAGACCTGTA
CTCTGCGGCTCACCAGACGACAAGAGCATCTTCTGGGCAGGGTCCTGTAC
TCACCGTTGGCACCGAGAAGTGCCTATTGTTGTATATAGTGGGTTTGGGC
AACATACTGTAGTTTGGTGTTTTTCTTGTCGAGGTTCTCGTTCGCGGTCG
GAATAAAGTTCTTGCTGCTTTGTCGTTTTTGCTCTGCTGCCCCTCTTGAT
TTTGAGCTAATGTGTGGGCTATGCACTCGAGAGCCCTTTGTACCGGCCAG
ACCATTACGCAAAGGCACACTGGGTCTCGTGATTGTCACTCTCAGGGATA
CATCCAAATCGAGAAGAGTATTGCCACGTCTCACTTCTGCCTGCCGCTGT
TCCACAGCAACATACTGGGAGTAGATTGTGCAGCGCCCGGGGTCATTTTG
TTTGTCCGCTGCCGAGCGATATATCACCACAGCGCCTACCCCTGCCTCAC
TTCCCCTCTCCCGTCTACGCGGGCTTGTGTGCAACTAATACGGAAGGGAA
TTCCTACGGGAGAGCATCTACTGGACATGTTCAAGCTGGAACATTTCGAA
CGTGTTGGAGGAGGGGGAGGCGAGGCGTACTTCGGCGTGGGAACATCCAG
CGGCCCCCAATTTGAAGAGCAACCGGGAGAAGACGAGGGAGGTTTTCGTA
GCGCCGAGGCGGAGTGCCTCGTGACGAGACGCATGTGCAACTACATGCCA
GGGACGATGCACGGCGGCGCAATAGCCGTTGCGGCGGAAGAGATCGCCCG
ACGATGTCGCCCGGCGCCCCTCCCGATGGACACCGTTCCGGTTCCTGGAA
ACCCTCGCGTTCAATACATGGAGGTGCACTACATGTCGCCGATCAAGCGA
CGAGCTGGGCTTGCCGCCGTGTCGGCTGCTTCGGGGACAGGCAAAAACAT
CACAAGAGTAGGACTGTCGGAGGTGGGCGGGACGGAGGGTGGCGTTCTAA
GCGCGGAAGCGGTGCTGCTGTGGAGTCAAGCGGGCGAGGGGGGAGGGGGG
GGGGGAGTTCATTGACTGAACGCGAGGAGGATCAAGAAGTGTAGGGGGGA
TAGTCTGGCATACCTATCGAGTAGGGGATGCATTTGAATAGTAGCGCTGC
GGGTGAATGGAACATGTTACATCTGGGTTATCAAGGAAGAATGACGACCC
GAAACTTCGGCTTGCGAAACATTGATCGAACACGACACGGCGTCAGGAAA
GCGTATTATTTTCTTCGGTCGCTGCGTTCGTTTGTGTTCGTAGCTCGGAG
GGCACACTCACACTATTTTCTGGGGTGAGCTAGGAATCACAAAACCTGCG
TTTGCAGGGCGTTAACTGTAAAAACGAGCACAACGCGCGCAAACACGCAT
GGGATCCCTCTTTTCTGCGCCCACACCGGGGGTATAAAATCCAGAAAGAA
GAAGAGAAGAACAGACTCTCACCGCGGCACGAAGAAGGGGTCGTGGGACA
CAACCGGGCTTGACCTTTTGCGTGCTGCCTAAACCAGGACGTCGGAAACC
GATCGTTGCCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig760:5371..6931+

>mRNA_E_fasciculatus_S2_contig760.15769.1 ID=mRNA_E_fasciculatus_S2_contig760.15769.1|Name=mRNA_E_fasciculatus_S2_contig760.15769.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=783bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig760:5371..6931+ (Ectocarpus fasciculatus EfasUO2)
ATGCACTCGAGAGCCCTTTGTACCGGCCAGACCATTACGCAAAGGCACAC
TGGGTCTCGTGATTGTCACTCTCAGGGATACATCCAAATCGAGAAGAGTA
TTGCCACGTCTCACTTCTGCCTGCCGCTGTTCCACAGCAACATACTGGGA
GTAGATTGTGCAGCGCCCGGGGTCATTTTGTTTGTCCGCTGCCGAGCGAT
ATATCACCACAGCGCCTACCCCTGCCTCACTTCCCCTCTCCCGTCTACGC
GGGCTTGTGTGCAACTAATACGGAAGGGAATTCCTACGGGAGAGCATCTA
CTGGACATGTTCAAGCTGGAACATTTCGAACGTGTTGGAGGAGGGGGAGG
CGAGGCGTACTTCGGCGTGGGAACATCCAGCGGCCCCCAATTTGAAGAGC
AACCGGGAGAAGACGAGGGAGGTTTTCGTAGCGCCGAGGCGGAGTGCCTC
GTGACGAGACGCATGTGCAACTACATGCCAGGGACGATGCACGGCGGCGC
AATAGCCGTTGCGGCGGAAGAGATCGCCCGACGATGTCGCCCGGCGCCCC
TCCCGATGGACACCGTTCCGGTTCCTGGAAACCCTCGCGTTCAATACATG
GAGGTGCACTACATGTCGCCGATCAAGCGACGAGCTGGGCTTGCCGCCGT
GTCGGCTGCTTCGGGGACAGGCAAAAACATCACAAGAGTAGGACTGTCGG
AGGTGGGCGGGACGGAGGGTGGCGTTCTAAGCGCGGAAGCGGTGCTGCTG
TGGAGTCAAGCGGGGGGGGGGGGAGTTCATTGA
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