mRNA_E_fasciculatus_S2_contig7598.15763.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7598.15763.1
Unique NamemRNA_E_fasciculatus_S2_contig7598.15763.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7598.15763.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD74_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 3.270e-20
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 1 
Query:   85 KGAEENLTSDELWRLASTATKKRFQILSQDLETRRAGLDRRLRDEKRR 228
            KGAEENLTSDELWRLASTATKKRFQILSQDLETRRA LDRRLRDEKRR
Sbjct:    6 KGAEENLTSDELWRLASTATKKRFQILSQDLETRRARLDRRLRDEKRR 53
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BLAST of mRNA_E_fasciculatus_S2_contig7598.15763.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2D9_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 2.880e-16
Identity = 43/48 (89.58%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:  106 TSDELWRLASTATKKRFQILSQDLETRRAGLDRRLRDEKRRRPSSKAG 249
            ++DELWRLASTATKKRFQILSQDLETRRA LDRRLRD KRRRPSSK G
Sbjct:   85 SNDELWRLASTATKKRFQILSQDLETRRARLDRRLRDAKRRRPSSKTG 132
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7598.15763.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.270e-2097.92protein (Fragment) n=1 Tax=Ectocarpus siliculosus ... [more]
Uncharacterized2.880e-1689.58protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7598contigE_fasciculatus_S2_contig7598:5873..7070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size308
Hectar predicted targeting categoryother localisation
Exons2
Cds size306
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842421.0397658-CDS-E_fasciculatus_S2_contig7598:5872..59591696842421.0397658-CDS-E_fasciculatus_S2_contig7598:5872..5959Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7598 5873..5959 +
1696842421.0530999-CDS-E_fasciculatus_S2_contig7598:6849..70681696842421.0530999-CDS-E_fasciculatus_S2_contig7598:6849..7068Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7598 6850..7068 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7598.15763.1prot_E_fasciculatus_S2_contig7598.15763.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7598 5873..7068 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7598.15763.1

>prot_E_fasciculatus_S2_contig7598.15763.1 ID=prot_E_fasciculatus_S2_contig7598.15763.1|Name=mRNA_E_fasciculatus_S2_contig7598.15763.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=102bp
KKDADEDKAAVKRIFRDFDNVSELLGLEKGAEENLTSDELWRLASTATKK
RFQILSQDLETRRAGLDRRLRDEKRRRPSSKAGAGGKGGRKGGAGTAAAA
AA
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mRNA from alignment at E_fasciculatus_S2_contig7598:5873..7070+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7598.15763.1 ID=mRNA_E_fasciculatus_S2_contig7598.15763.1|Name=mRNA_E_fasciculatus_S2_contig7598.15763.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1198bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7598:5873..7070+ (Ectocarpus fasciculatus EfasUO2)
AAGAAGGACGCCGACGAAGACAAGGCGGCCGTGAAAAGAATTTTTCGGGA
TTTCGACAATGTTTCGGAGCTGCTTGGGCTGGAGAAGGTGAGGGGGGGGG
GGGCTCCGTCGAGCAAATGTTTCTCGTTTCGCGCCGCGGGGGCTCCGTCG
ATTCCTGTTGGAAAAAAACCCGGTGGGGTGTAAGGGAGTAAGGGAGCACA
CACGGATGATGGTGTATTAAAATTTATCGTTCGGAACAGCAGTGTGTACG
GGCGTCTCCACTGGTGCAGTTGGCACGCTTACGGTTTCCGCAAACACGCA
CATGAGAAACCGGTGCGCGGCACAGCACCAGTGGGTCTCGACGCAATGGG
TCCTATGACGAGGTCCGCTGCCTGCATGATGGTTCGAAGCGCATGAACAA
TATGTGCATGTATCATGTGGTACGCCCGTTAGGTCCGTGGTCACGGCGAA
GGGTGCCATGATTCTTTTGCAGGAAGTGGTCTGTGGCCTAGTGATAACCG
GTGTAGTCTTGAACCACACACACCCAATCACTGAAAGACTGCTCGTTCGA
GATATTACCCCAGTCGATTTCCTGATAAAGACTACTCGTTCGAGATATTT
CCCCAGTCGAAGGTGCGCGTGGACTGAATTGTTTGCAGTGGATGGGGATT
TAAGCGCTTGCTGGATGTTTGTTTTGAGCCTGTCCTAAGCCTACACACTG
AAGGATCGGTCATGCCAGGTGGCACAAGTCGCAATACCACCTCCGTACAT
GGATAGGTAAATGTTAGTTTCTCCTCAAGACCGAGGAAGAATCTTTGCGT
TGTTGTTTGTTGCTGTTGATGACGATGCCTTTTGGCTGCCGAAGAAAGCA
AGCCACCTGGATGGCCCGATTGAGTTCGGCCGCTAGATGATCTGCGCCTG
CCGTGCACATATCCACACCAAACAGCCAACGTACACCCTCCTTTCTGTCT
TCTCCCTGCCAACCTTTTCCCCCAAAGGGGGCCGAGGAAAACCTTACCAG
CGACGAGCTCTGGCGCCTCGCCTCCACTGCGACCAAAAAGCGCTTCCAGA
TCCTAAGCCAAGACCTGGAAACCCGCCGCGCTGGGCTCGACCGAAGGCTG
AGGGACGAGAAACGCCGCAGGCCGTCGTCGAAAGCCGGAGCGGGGGGAAA
GGGCGGCCGCAAGGGCGGTGCCGGTACTGCAGCGGCGGCGGCGGCGGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7598:5873..7070+

>mRNA_E_fasciculatus_S2_contig7598.15763.1 ID=mRNA_E_fasciculatus_S2_contig7598.15763.1|Name=mRNA_E_fasciculatus_S2_contig7598.15763.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=306bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7598:5873..7070+ (Ectocarpus fasciculatus EfasUO2)
AAGAAGGACGCCGACGAAGACAAGGCGGCCGTGAAAAGAATTTTTCGGGA
TTTCGACAATGTTTCGGAGCTGCTTGGGCTGGAGAAGGGGGCCGAGGAAA
ACCTTACCAGCGACGAGCTCTGGCGCCTCGCCTCCACTGCGACCAAAAAG
CGCTTCCAGATCCTAAGCCAAGACCTGGAAACCCGCCGCGCTGGGCTCGA
CCGAAGGCTGAGGGACGAGAAACGCCGCAGGCCGTCGTCGAAAGCCGGAG
CGGGGGGAAAGGGCGGCCGCAAGGGCGGTGCCGGTACTGCAGCGGCGGCG
GCGGCG
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