mRNA_E_fasciculatus_S2_contig7596.15760.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7596.15760.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDR3_ECTSI) HSP 1 Score: 743 bits (1917), Expect = 2.600e-266 Identity = 388/438 (88.58%), Postives = 395/438 (90.18%), Query Frame = 1
Query: 1 ISMTDEYGDGWVGGVDGYYNTWQLTDLTTDTVWSKGTLADNHESATIKECLADGEYKFNTTATSAFADDMGWGICDNYGTAGEGLIFTVLNGACDGGSATPIARETAEETSDAAGSYCVLPAPESDEDYRTSTCTALSSGMKIDGVGLYYDDRCNSADYSGCYARSIPACRLCFYDKDLWMSRFPNSRVPDWELCPCCVADTLGIDCASGGGGGTDEGVIIGVSVGIAGVIAIACCLSCAFGPTIVRFLRRMRKKKHAEDQLDLDGHAGTSAFPESPSGGMSGGGNTLRGAVLTHGNRDRGRSGHFPIPRFDSIRGRFDSGIFASNVGGXXXXXXXXXXXXXXVGAGAHVGGGGPSGELEKISAEQANVSTTAQSTPSGVNGNATGTGGGGKKSGNAPRSTVLDGRLVAQGYATSDMGRPTSLTSGTSGAATAGGGEG 1314
ISMTDEYGDGWVGGVDGYYNTWQLTDLTTDTVWSKGTLADNHESATIKECLADGEY FNTTATSAFADDMGWGICDNYG AGEGL FTVLNGACDG SA IAR TAEETSDA SYCVLPAPESD DYRTSTCTALSSGMKIDGVGL+YDDRCNSADYSGC+ARSIPACRLCF+DKDLW+SRFP+SRVPDWELCPCCVADTLGIDCASGGGGGTDEGVIIGVSVGIAGVIAIACCLSCAFGPTIVRFLRRMRKKKHAEDQLDLDGH GTSAFPESP GGM G GNTLRGAVLTHGNRDRGRSGHFPIPRFDSIRGRFDSGIFASNVGG XXXXXX VGA AHVGGGGPSGELEKISAEQANVSTTAQSTPSG N K+GNAPRSTVLDGRLVAQGY T+DM RPTS SG S AATA GG G
Sbjct: 151 ISMTDEYGDGWVGGVDGYYNTWQLTDLTTDTVWSKGTLADNHESATIKECLADGEYMFNTTATSAFADDMGWGICDNYGAAGEGLKFTVLNGACDGESAELIARATAEETSDAGDSYCVLPAPESDVDYRTSTCTALSSGMKIDGVGLFYDDRCNSADYSGCFARSIPACRLCFWDKDLWLSRFPSSRVPDWELCPCCVADTLGIDCASGGGGGTDEGVIIGVSVGIAGVIAIACCLSCAFGPTIVRFLRRMRKKKHAEDQLDLDGHPGTSAFPESPGGGMGGSGNTLRGAVLTHGNRDRGRSGHFPIPRFDSIRGRFDSGIFASNVGGGXXXXXXG------VGARAHVGGGGPSGELEKISAEQANVSTTAQSTPSGANXXXXXXXXXXXKAGNAPRSTVLDGRLVAQGYTTTDMERPTS--SGPSRAATAAGGGG 580
BLAST of mRNA_E_fasciculatus_S2_contig7596.15760.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M6_9PHAE) HSP 1 Score: 526 bits (1355), Expect = 4.340e-181 Identity = 250/278 (89.93%), Postives = 260/278 (93.53%), Query Frame = 1
Query: 1 ISMTDEYGDGWVGGVDGYYNTWQLTDLTTDTVWSKGTLADNHESATIKECLADGEYKFNTTATSAFADDMGWGICDNYGTAGEGLIFTVLNGACDGGSATPIARETAEETSDAAGSYCVLPAPESDEDYRTSTCTALSSGMKIDGVGLYYDDRCNSADYSGCYARSIPACRLCFYDKDLWMSRFPNSRVPDWELCPCCVADTLGIDCASGGGGGTDEGVIIGVSVGIAGVIAIACCLSCAFGPTIVRFLRRMRKKKHAEDQLDLDGHAGTSAFPESPS 834
ISMTDEYGDGWVGGVDGYYNTWQLTDLTTDTVWSKGTLADNHESATIKECLADGEY FNTTATSAFADDMGWGICDNYG AGEGL FTVLNGACDG SA IAR TAEETSDA SYCVLPAPESDEDYRTSTCTALSSGMKIDGVGL+YDDRCNSADYSGC+ARSIPACRLCF+DKDLWMSRFPNSRVPDWELCPCCVADTLGIDCASGGGGGTD+GVIIG+SVGIAGVIAIACCLSCAFGPTIVRF RR + K+ E+ LD+ G GTSAFPESP+
Sbjct: 295 ISMTDEYGDGWVGGVDGYYNTWQLTDLTTDTVWSKGTLADNHESATIKECLADGEYMFNTTATSAFADDMGWGICDNYGAAGEGLKFTVLNGACDGESAELIARATAEETSDAGDSYCVLPAPESDEDYRTSTCTALSSGMKIDGVGLFYDDRCNSADYSGCFARSIPACRLCFWDKDLWMSRFPNSRVPDWELCPCCVADTLGIDCASGGGGGTDDGVIIGISVGIAGVIAIACCLSCAFGPTIVRFFRRFQNKRLDEEDLDMAGVLGTSAFPESPT 572
BLAST of mRNA_E_fasciculatus_S2_contig7596.15760.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L443_9PHAE) HSP 1 Score: 255 bits (651), Expect = 8.470e-80 Identity = 143/171 (83.63%), Postives = 149/171 (87.13%), Query Frame = 1
Query: 754 MRKKKHAEDQLDLDGHAGTSAFPESPSGGMSGGGNTLRGAVLTHGNRDRGRSGHFPIPRFDSIRGRFDSGIFASNVGGXXXXXXXXXXXXXXVGAGAHVGGGGPSGELEKISAEQANVSTTAQSTPSGVNGNATGTGGGGKKSGNAPRSTVLDGRLVAQGYATSDMGRPTS 1266
MRKKKHAEDQLDLDGH GTSAFP+SP GGGNTLRGAVLTHGNRDRGRSGHFPIPRFDSIRGRFDSGIFASNV G XXXXX AGAHVGGGGPSGELEKISAEQANVSTTAQSTPSG NG+ GTGGGG+K+GNAPRSTVLDGRLVA+GY T+DMGRPTS
Sbjct: 1 MRKKKHAEDQLDLDGHPGTSAFPDSP-----GGGNTLRGAVLTHGNRDRGRSGHFPIPRFDSIRGRFDSGIFASNVAGGXXXXXV---------AGAHVGGGGPSGELEKISAEQANVSTTAQSTPSGANGSGVGTGGGGRKAGNAPRSTVLDGRLVAKGYTTTDMGRPTS 157
BLAST of mRNA_E_fasciculatus_S2_contig7596.15760.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G003_ECTSI) HSP 1 Score: 181 bits (458), Expect = 6.410e-46 Identity = 101/300 (33.67%), Postives = 149/300 (49.67%), Query Frame = 1
Query: 1 ISMTDEYGDGWVGGVDGYYNTWQLTDLTTDTVWSKGTLADNHESATIKECLADGEYKFNTTATSAFADDMGWGICDNYGTAGEGLIFTVLNGACDGGSATPIARETAEETSDAAGSYCVLPAPESDEDYRTSTCTALSSGM-KIDG--VGLYYDDRC--NSADYSGCYARSIPACRLCFYDKDLWMSRFPNSRVPDWELCPCCVADTLGIDCASGGGGGT--DEGVI-----------------IGVSVGIAGVIAIACCLSCAFGPTIVRFLRRMRKKKHAEDQLDLDGHAGTSAFPES 828
I+ TDEYGDGWVGG+ NTW LTD + +V ++GTL D H S K CL DG+Y F TTA +A++ D W +C+ G G L F V + AC+ ++ A + ++G C LPA ++ C G+ ++ G VG+YYD+ C +GC + ACR+CF +++ W++ FP+ R PDW CPCCVAD LG+ C GG GT DE ++ +G +G+ + A+ CC + + R +++ DG P S
Sbjct: 119 ITTTDEYGDGWVGGLPDRSNTWALTDAASSSVVAEGTLHDWHFSGMTKLCLQDGDYSFETTAYTAWSSDSAWNVCEVDGGMGGSLEFEVSSSACNVLDSSSKDGPPATDAETSSGDLCALPADDA--------CVGFDVGVAEVSGPSVGMYYDEACLEGGGGNTGCGGGGVTACRICFVNREFWLADFPDERYPDWLDCPCCVADALGVTCQGGGETGTASDESIVEQAEAFYWEGGTLLYASLGGLIGLGLITALCCCRDIRKANQLALSYKHFRAAAVTQNKYKEDGDTSPDVSPPS 410
BLAST of mRNA_E_fasciculatus_S2_contig7596.15760.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX8_9PHAE) HSP 1 Score: 170 bits (430), Expect = 3.150e-42 Identity = 97/262 (37.02%), Postives = 139/262 (53.05%), Query Frame = 1
Query: 1 ISMTDEYGDGWVGGVDGYYNTWQLTDLTTDTVWSKGTLADNHESATIKECLADGEYKFNTTATSAFADDMGWGICDNYGTAGEGLIFTVLNGACD--GGSATPIARETAEETSDAAGSYCVLPAPESDEDYRTSTCTALSSGM-KIDG--VGLYYDDRC--NSADYSGCYARSIPACRLCFYDKDLWMSRFPNSRVPDWELCPCCVADTLGIDCASGGGGGT--DEGVI-----------------IGVSVGIAGVIAIACC 708
I+ TDEYGDGWVGG+ NTW LTD ++ +V ++GTL D H S K CL DG+Y F TTA +A++ + W +C+ G G L F + N AC+ S+ T ETS G +C LPA + C L G+ ++ G VG+YYD+ C +GC + CR+CF +++ W++ FP+ R PDW CPCCVAD L + C +G GT DE ++ +G +G+ + A+ CC
Sbjct: 217 ITTTDEYGDGWVGGLPDRSNTWTLTDASSSSVVAEGTLHDWHFSGMTKLCLQDGDYSFETTADAAWSSESAWNVCEVDGGMGGSLDFEMSNSACNVLDSSSKDGPPATVAETS--LGDFCALPADD--------PCVDLDVGVAEVRGPSVGMYYDESCLEGGGGDTGCGGGGVTVCRICFVNREFWLADFPDERYPDWLDCPCCVADALVVTCQAGVETGTASDESIVEKAEAFYWEGGTLLCASLGGLIGLGLITALCCC 468 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7596.15760.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7596.15760.1 >prot_E_fasciculatus_S2_contig7596.15760.1 ID=prot_E_fasciculatus_S2_contig7596.15760.1|Name=mRNA_E_fasciculatus_S2_contig7596.15760.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=436bp MTDEYGDGWVGGVDGYYNTWQLTDLTTDTVWSKGTLADNHESATIKECLAback to top mRNA from alignment at E_fasciculatus_S2_contig7596:3918..7256- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7596.15760.1 ID=mRNA_E_fasciculatus_S2_contig7596.15760.1|Name=mRNA_E_fasciculatus_S2_contig7596.15760.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3339bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7596:3918..7256- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7596:3918..7256- >mRNA_E_fasciculatus_S2_contig7596.15760.1 ID=mRNA_E_fasciculatus_S2_contig7596.15760.1|Name=mRNA_E_fasciculatus_S2_contig7596.15760.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1308bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7596:3918..7256- (Ectocarpus fasciculatus EfasUO2)back to top |