mRNA_E_fasciculatus_S2_contig7595.15759.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7595.15759.1
Unique NamemRNA_E_fasciculatus_S2_contig7595.15759.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7595.15759.1 vs.
Match: Ubiquinol (cytochrome c reductase subunit QCR7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK78_ECTSI)

HSP 1 Score: 213 bits (542), Expect = 6.140e-67
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 1
Query:   28 MARLLKKAGDFVLDVAATQYKRSMTRKLNAFGLKFDDLMIEEDPDVAEAVRRLTPEQQLARKRRQFRAFDISLKKTPLPDHIQAVQDPFEPYLQDIIKEVREERLERELLNQR 366
            MAR+LKKAGDFVLDVAATQYKRSMTRKLNAFGLKFDDLMIEEDPDVAEAVRRLTPEQQLARKRRQFRAFDISLKKTPLPDHIQAVQDPFEPYLQDIIKEVREERLERELLNQR
Sbjct:    1 MARVLKKAGDFVLDVAATQYKRSMTRKLNAFGLKFDDLMIEEDPDVAEAVRRLTPEQQLARKRRQFRAFDISLKKTPLPDHIQAVQDPFEPYLQDIIKEVREERLERELLNQR 113          
BLAST of mRNA_E_fasciculatus_S2_contig7595.15759.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FYD9_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 9.450e-19
Identity = 49/103 (47.57%), Postives = 66/103 (64.08%), Query Frame = 1
Query:   52 GDFVLDVAATQYKRSMTRKLNAFGLKFDDLMIEEDPDVAEAVRRLTPEQQLARKRRQFRAFDISLKKTPLPDHIQAVQDPFEPYLQDIIKEVREERLERELLN 360
            G  V +  A  Y+  + ++LN +GLK+DD++ E DPDV  A+ R+  + Q+AR RR  RA DIS KK PLP   Q    P EPY++ I+ E+R  RLERELLN
Sbjct:    7 GKNVWNSVAKVYQAGVVQRLNQYGLKYDDILNESDPDVKIALSRMPGDLQVARDRRLKRALDISFKKKPLPADFQKTLTPLEPYMESIVDEMRSLRLERELLN 109          
BLAST of mRNA_E_fasciculatus_S2_contig7595.15759.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GXC5_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.370e-17
Identity = 50/107 (46.73%), Postives = 68/107 (63.55%), Query Frame = 1
Query:   40 LKKAGDFVLDVAATQYKRSMTRKLNAFGLKFDDLMIEEDPDVAEAVRRLTPEQQLARKRRQFRAFDISLKKTPLPDHIQAVQDPFEPYLQDIIKEVREERLERELLN 360
            L+  G    +V A  Y+  + ++LN +GLK++D++ E  PDV +AV RL P+ Q +R RR  RA DIS KK PLP  IQ    P +PY+  ++ E RE RLERELLN
Sbjct:    3 LEMVGKRAWNVLAGGYQTMVIQRLNQYGLKYNDILNEALPDVQKAVSRLDPDMQQSRDRRIKRALDISFKKKPLPMDIQKKLFPLDPYIDSLLDEARELRLERELLN 109          
BLAST of mRNA_E_fasciculatus_S2_contig7595.15759.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9P6_AURAN)

HSP 1 Score: 82.0 bits (201), Expect = 2.870e-16
Identity = 44/87 (50.57%), Postives = 59/87 (67.82%), Query Frame = 1
Query:  100 TRKLNAFGLKFDDLMIEEDPDVAEAVRRLTPEQQLARKRRQFRAFDISLKKTPLPDHIQAVQDPFEPYLQDIIKEVREERLERELLN 360
            +R LN +GLK+DD+ IE+D D A+A+ R++ E+  AR RR  RAFDIS KK  LP  +Q +Q P  PY   +I E +  R+ERELLN
Sbjct:    1 SRSLNQYGLKYDDVKIEQDADYAKALGRISDEEVQARARRMKRAFDISFKKKSLPADLQRLQAPLAPYATPLIDEAKARRVERELLN 87          
BLAST of mRNA_E_fasciculatus_S2_contig7595.15759.1 vs.
Match: Hypothetical (protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2G2_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 2.380e-14
Identity = 43/100 (43.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query:   61 VLDVAATQYKRSMTRKLNAFGLKFDDLMIEEDPDVAEAVRRLTPEQQLARKRRQFRAFDISLKKTPLPDHIQAVQDPFEPYLQDIIKEVREERLERELLN 360
            +++  A  Y  S+TR L  +GL++DD++ E  P V EA+ RLTPE+++ R RR  RA D+S KK  +P+ +Q   DPF+ YL D  ++  +E+ ERE+LN
Sbjct:   44 IMNAVAKAYSESVTRSLQRYGLRYDDVVNEALPSVQEALTRLTPEEKVGRDRRLKRALDLSFKKKTMPEEMQNY-DPFQKYLYDHKEKALKEQDEREILN 142          
BLAST of mRNA_E_fasciculatus_S2_contig7595.15759.1 vs.
Match: Uncharacterized (protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NXZ7_PORUM)

HSP 1 Score: 75.9 bits (185), Expect = 1.270e-13
Identity = 38/93 (40.86%), Postives = 62/93 (66.67%), Query Frame = 1
Query:   73 AATQYKRSMTRKLNAFGLKFDDLMIEEDPDVAEAVRRLTPEQQLARKRRQFRAFDISLKKTPLPDHIQAVQDPFEPYLQDIIKEVREERLERE 351
            AA  Y+ ++  +L  +GL++DDL+ E DP+V + +R + PE+   R +R  RA D+ LKKT LPD IQA QD + PY++  +  +++ +LER+
Sbjct:   25 AAASYQAAVGNELRKYGLRYDDLLNEYDPEVRKTIRTMPPEEAELRAKRLTRAIDVDLKKTQLPDPIQAKQDIWNPYIRSRLGALKQSQLERQ 117          
BLAST of mRNA_E_fasciculatus_S2_contig7595.15759.1 vs.
Match: Hypothetical (protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TS46_9EUKA)

HSP 1 Score: 74.7 bits (182), Expect = 3.760e-13
Identity = 38/93 (40.86%), Postives = 61/93 (65.59%), Query Frame = 1
Query:   79 TQYKRSMTRKLNAFGLKFDDLMIEEDPDVAEAVRRLTPEQQLARKRRQFRAFDISLKKTPLPDHIQAVQDPFEPYLQDIIKEVREERLERELL 357
            T Y+  + + L+ +GL++DDL+IE DPDV  A+ RL+P ++  R  R  RA D  +K + +P+H+Q  Q P   YL   I++ R+ERLE+++L
Sbjct:   32 TSYRNQLIKDLDKYGLRYDDLLIETDPDVITAISRLSPRERTLRTMRLKRALDCEIKHSYVPEHLQGKQGPHR-YLTPYIEQARKERLEKDIL 123          
BLAST of mRNA_E_fasciculatus_S2_contig7595.15759.1 vs.
Match: Hypothetical (protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LNZ1_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 3.850e-13
Identity = 40/101 (39.60%), Postives = 67/101 (66.34%), Query Frame = 1
Query:   61 VLDVAATQYKRSMTRKLNAFGLKFDDLMIEEDPDVAEAVRRLTPEQQLARKRRQFRAFDISLKKTPLPDHIQAVQDPFEPYLQDIIKEVREERLERELLNQ 363
            ++   A +Y++ + + L  +GL+++D++I E+PDV  A++ + PE+  AR RR  RA D+S K   LP HIQA+Q P + YL + ++E+R+ R ERE L +
Sbjct:    6 IIGTVAKKYQKWVHKDLAKYGLRYEDVIIYENPDVQRALKYIPPEEVEARNRRIRRALDLSFKHKELPKHIQAIQAPGKFYLDETMEEMRKLRKEREELTK 106          
BLAST of mRNA_E_fasciculatus_S2_contig7595.15759.1 vs.
Match: Cytochrome (b-c1 complex subunit 7 n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LHI6_9CHLO)

HSP 1 Score: 73.2 bits (178), Expect = 1.430e-12
Identity = 48/108 (44.44%), Postives = 67/108 (62.04%), Query Frame = 1
Query:   37 LLKKAGDFVLDVAATQYKRSMTRKLNAFGLKFDDLMIEE-DPDVAEAVRRLTPEQQLARKRRQFRAFDISLKKTPLPDHIQAVQDPFEPYLQDIIKEVREERLERELL 357
            +L K  D ++ V A +Y+ ++   L  +GL+++DLM  E D +V EA+RRL  +   AR +R  RA D+S+K   LP  +QAVQ PFE YLQ  +  VR ER ERE L
Sbjct:    6 MLAKLFDPLVAVIAPRYQAAVGSSLRKYGLRYEDLMDHEHDLNVNEALRRLPQDVVDARNQRIKRALDLSMKHAELPKELQAVQTPFESYLQATLDVVRAERAEREAL 113          
BLAST of mRNA_E_fasciculatus_S2_contig7595.15759.1 vs.
Match: Cytochrome (b-c1 complex subunit 7-1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0E6_9FLOR)

HSP 1 Score: 72.0 bits (175), Expect = 3.040e-12
Identity = 37/100 (37.00%), Postives = 68/100 (68.00%), Query Frame = 1
Query:   61 VLDVAATQYKRSMTRKLNAFGLKFDDLMIEEDPDVAEAVRRLTPEQQLARKRRQFRAFDISLKKTPLPDHIQAVQDPFEPYLQDIIKEVREERLERELLN 360
            +L  AA  Y+ ++  +L  +GL++DDL+ E D +V  A+ +L+P++   R +R  RA D+ +KKT LP+ IQA +D + PYL+  I  +++++LER++++
Sbjct:   16 LLSRAARSYQAAVGAELRRYGLRYDDLLNEYDDEVKHAISKLSPQELELRNKRLKRAIDLDVKKTYLPEDIQAQEDIWNPYLRTRIAALKQKKLERQIVD 115          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7595.15759.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Ubiquinol6.140e-6799.12cytochrome c reductase subunit QCR7 n=2 Tax=Ectoca... [more]
Hypothetical9.450e-1947.57protein n=1 Tax=Florenciella parvula TaxID=236787 ... [more]
Hypothetical1.370e-1746.73protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
Uncharacterized2.870e-1650.57protein (Fragment) n=1 Tax=Aureococcus anophageffe... [more]
Hypothetical2.380e-1443.00protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=1... [more]
Uncharacterized1.270e-1340.86protein n=1 Tax=Porphyra umbilicalis TaxID=2786 Re... [more]
Hypothetical3.760e-1340.86protein n=1 Tax=Lotharella oceanica TaxID=641309 R... [more]
Hypothetical3.850e-1339.60protein n=1 Tax=Aplanochytrium stocchinoi TaxID=21... [more]
Cytochrome1.430e-1244.44b-c1 complex subunit 7 n=1 Tax=Helicosporidium sp.... [more]
Cytochrome3.040e-1237.00b-c1 complex subunit 7-1 n=1 Tax=Gracilariopsis ch... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7595contigE_fasciculatus_S2_contig7595:3815..7343 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score85.9
Seed ortholog evalue1.3e-14
Seed eggNOG ortholog44056.XP_009037032.1
Model size875
KEGG koko:K00417
KEGG Pathwayko00190,ko01100,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00152
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Ubiquinol-cytochrome C reductase complex 14kD subunit
EggNOG OGs2E3C6@1,2SAFS@2759
Ec32 ortholog descriptionubiquinol cytochrome c reductase subunit QCR7
Ec32 orthologEc-08_003040.1
Cds size342
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842420.748822-UTR-E_fasciculatus_S2_contig7595:3814..38411696842420.748822-UTR-E_fasciculatus_S2_contig7595:3814..3841Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7595 3815..3841 +
1696842420.7982123-UTR-E_fasciculatus_S2_contig7595:6837..73431696842420.7982123-UTR-E_fasciculatus_S2_contig7595:6837..7343Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7595 6838..7343 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842420.7659829-CDS-E_fasciculatus_S2_contig7595:3841..39351696842420.7659829-CDS-E_fasciculatus_S2_contig7595:3841..3935Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7595 3842..3935 +
1696842420.7757049-CDS-E_fasciculatus_S2_contig7595:5162..53381696842420.7757049-CDS-E_fasciculatus_S2_contig7595:5162..5338Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7595 5163..5338 +
1696842420.7857695-CDS-E_fasciculatus_S2_contig7595:6765..68371696842420.7857695-CDS-E_fasciculatus_S2_contig7595:6765..6837Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7595 6766..6837 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7595.15759.1prot_E_fasciculatus_S2_contig7595.15759.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7595 3842..6837 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7595.15759.1

>prot_E_fasciculatus_S2_contig7595.15759.1 ID=prot_E_fasciculatus_S2_contig7595.15759.1|Name=mRNA_E_fasciculatus_S2_contig7595.15759.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=114bp
MARLLKKAGDFVLDVAATQYKRSMTRKLNAFGLKFDDLMIEEDPDVAEAV
RRLTPEQQLARKRRQFRAFDISLKKTPLPDHIQAVQDPFEPYLQDIIKEV
REERLERELLNQR*
back to top

mRNA from alignment at E_fasciculatus_S2_contig7595:3815..7343+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7595.15759.1 ID=mRNA_E_fasciculatus_S2_contig7595.15759.1|Name=mRNA_E_fasciculatus_S2_contig7595.15759.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3529bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7595:3815..7343+ (Ectocarpus fasciculatus EfasUO2)
AGCAGACAGAGACACACGGAGGGAACGATGGCCAGACTACTGAAGAAGGC TGGGGACTTCGTGCTGGATGTTGCTGCGACGCAGTACAAGCGGAGCATGA CCAGGAAGCTCAATGCGTTCGGTGAGTCCCGAAAGACCAAGCAGCAGGAA CTGCTGTGCGGGGATGTGTTGCAAGACGCATTGTTGTCTACATATGTGGT AACAGCGTTGCTCTCTGCTTCGGAACGGAAGGCCTGGAACAAACTCCCTG GGCTCTCTTGCAGAGCACGTTTGCGGAAGGAGCATTGCACAGCGGGGAGT ATTATCGGTCCGAATTCCCCCTTTGGTATGCTCGTTATCGTTTCGTTTCA CTGCTAGGCTGCTATGCGTACGAACACGCTCTCCTCCCCTGTGTGTGAAT GCATTTTGCGTCAGCGGACAGAGAGGGGGGCGGTTCCACGAGAAGACAGC AGTGTGCTTCGTTGGTATCGTAGAGTGCGTTCCCCGCCCCGCGTCGTATC TCTCCACGTGTCTCTCTTTCTCTCTCTCACCAGGACTTTGCACCTCACCT GATATTTCATTGTTGGGCACTCGCTATGAAACCACCGACAATCAGTGTTG ATTTCTGCTGGCTGTATGATACACAGCACAGAAATCATGCCGACAGAAAT CGGAGGGGGCCTGAGCTTGGTGTGTCCGCCGGTGTTGAGTGCATTCGCTG CAGCAGTTCCCACTGCTGCTCTCGACGCCAGCAGGAGTTATTCGGCGCCA GCAGGAGTTATTTTCGTGTGCACCTAATATTCAGGGTTGTTGATCTACTT GGCACAATGTTGGTACAAATGGTGCTTGTTCCCAAACGCTCACAGGGCCG CTCCCCTCTCTTTCTCTCTCTCTAAGCCTACTCCCGTGAAATCACGTACA TACAAGTCACCCCATTTTCATGATGTGCACTGCTGTACGCCCACAGGGTC GCTCCCCCCTCTCTCTCTAGCCGACTCCGGTGAAATCACGTAGTCACCCC TTGATGCTGTTCTTGCTGCACCGCTATCTTCGGACACACACTATCGGGGG CGTTGCCGTTCTCTTCGTGACTTGCCCCGTACAGCAGTAGCTGCGGATGT CGCAGCACATTTTGAACTGCTGTATTTGCAACTGGATACACAGGCGACAT TGGCGAAGCTGGTTGTATTGCTGTTACGGGGTGGCGAACTGATCTACTTG CACATATGCGTACATCCCACTCACTGCAAAGACTAAGACTTCAACACATC CCCTTCGACTATGGGTATATCTCGAACGGCTAGTCTTTCTGTTTGTATTT ATTTTTCTAATACTTGTTGCTGTGTCTTGGTTGGTTGGTGCTATACAGGG CTTAAGTTCGACGACCTCATGATCGAGGAGGACCCCGACGTGGCCGAGGC CGTGCGCCGCCTTACCCCGGAGCAGCAGCTCGCGCGCAAGCGCCGCCAGT TCAGGGCGTTCGACATCTCGCTCAAGAAGACCCCGCTGCCAGACCACATC CAGGCCGTACAGGACCCCTTCGAGGTGGGTGTGTACGACTATTGCTGTAA ACCGTTTTTTTTTTTTGGCATTCCACCGCCTTCATAGTATTTCAGCTGAG CAGGCACGATTTGGGTGTAGAGACTTCGAATGAAGAATGGGGCAGGAGTA CCGCTCTTTTATGCACAGTTTGCAGGATGAAAATGAAAATATCCTCTGGT TCTCCCTTGCCCGAATCACAGCAGCAAGTACTGGCGCAAAGAGGGTGTGT ACTCCACGCCTGGCCGGCCGAAGCTGACACATGCTGATACCGCTGCTGGC CTCCCGCAGGAGCCAGACAAAACAGTCGCAGTGTATTGTGTGTGTGCCTG TGTCTGTCTCTCTACTGTAGTTAGCATCGACCGTGCTACAGCAGCACCCG GCTGACCAATGAAAATACACGCCGGTCTTGCATCTTGCATCTTGCAGGGT GTTCGTGTTTCTTTGGTTAGCATCGAACGCGCTAATACTCGTCTGCCCAA CGAAAAAACGTCTGTCTTGTAGCGGGATAAAACGTGTGTGTGAGAATATG CAGACGTTTGTCGCTATTATTCCTGTCCTCCTGATTCGGTGGGCTGGCTG ACATACAACTAGTGCTTCGTCCTTAGAACGGCGGTGAAAAAAAGAAAAAA AGAACTGCTGCTGATGACACATTCGTCGGCGCTTAGTCAAGAGTCAGCTG CATAGAAGGGATGCTGTCACGAGCGGTTCCCCTCTTTTTTTTTCTGGTGC GTCGAGTTTTAAGGAAGGGGGCGCTAACGCCTTGGCCTCCCGCCTCACTC CGTGCATGCTCTCCGTGCGTGCTTACCGTAAGAGGCGGAGATATATTTAG CACCACCACCCCACCGACACCGACTTTCAAAGCTCGATAGATTAGATTGC TCCACAGCCAAGAGGGTGCGGGAGGAGCCCGATACTGCTACTGTACGGAT AGTAGTCAATGAGATGATTCCAAAGCCAACATTCTTGGCGTTGGCAATAA CTACCTTGGTCGTGAGGCACTCGACCTTTGAAGACCCGGTCTAGGCAGGG TGCCATCGTTGCGCCTCTTAACGGTGCATGTCGCTTACAAGCCAACGTGA GAGTCGCCCGCCGGCCGCAGCAGCATGTGAAAATGTCGAGTCGGCGACAC TGAGTAGAGAGAAGTCGACCTTGCTGCAGGACGCCCAACACTACGATGCG ACAGCAGCGCGATTGGCTTGTTGAAAATTTGGTACTCTGCCCCTTTTTGA GCACGATGAACAGCTAGTTGTAAGAGAGGAACGTTTTATTCGAAAAATAA ACGTTTTATTCGAAAAATACGCTTTTAGGTCTGGACTGACTGGAACTAAA ACCAACCCCCACATTTTCACGTTTGTATTTGTCGGTATGCTTAACCTGTC CCCTCCCCGTCGATGCCCCCCCATACGACCTCCCCCCCCCCCCGCGCGCA GCCGTACTTGCAGGACATCATCAAAGAAGTACGGGAGGAGAGGCTCGAGA GGGAGCTGCTCAACCAACGGTGATGGAGTGGTACAATAATGAGCGAGAAG GGCGATTTCGTGGGCGCGGGGGGGCACCGCAAGAGACGTGTGTGTGGAAT TGCCAGCGAGGCGGTTTCACTCACGAGCTGAATCGTCGATCTCGGAGGGA GGATTCGCTGATGGCTGGATCCAGCTTTGGGATTGGGAAGGGGGAGGGAG AAGGGTTGTTGGAAAGGGTCGATCGTTTGTACTTCTCTACCGCGCACTTC AACAGCTCTCTTTGTCTCGCGTAAATGCGCGTTGTTGTATTTCAAGACGA ATCTTGCATCGATCAGCACCCCTTGCCGAGTTAGGCCTTCCTCATGTAGG TGGGAGATGACAAAAAAGTTTGGCGCGGCATGATCGTTTTTGCGGTAAGC CAACTGGGAATAAGATTGTTGGCAGCGAGGTTTGGCTCAAACGTTCGGTA GCACTTCTCTCGGAGGTGTTTGTGGAAACATCAGCCCATCAACGATACCG ATACCATTTATCACCACGTCTTGGGAGGA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7595:3815..7343+

>mRNA_E_fasciculatus_S2_contig7595.15759.1 ID=mRNA_E_fasciculatus_S2_contig7595.15759.1|Name=mRNA_E_fasciculatus_S2_contig7595.15759.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=342bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7595:3815..7343+ (Ectocarpus fasciculatus EfasUO2)
ATGGCCAGACTACTGAAGAAGGCTGGGGACTTCGTGCTGGATGTTGCTGC
GACGCAGTACAAGCGGAGCATGACCAGGAAGCTCAATGCGTTCGGGCTTA
AGTTCGACGACCTCATGATCGAGGAGGACCCCGACGTGGCCGAGGCCGTG
CGCCGCCTTACCCCGGAGCAGCAGCTCGCGCGCAAGCGCCGCCAGTTCAG
GGCGTTCGACATCTCGCTCAAGAAGACCCCGCTGCCAGACCACATCCAGG
CCGTACAGGACCCCTTCGAGCCGTACTTGCAGGACATCATCAAAGAAGTA
CGGGAGGAGAGGCTCGAGAGGGAGCTGCTCAACCAACGGTGA
back to top