mRNA_E_fasciculatus_S2_contig7594.15757.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7594.15757.1
Unique NamemRNA_E_fasciculatus_S2_contig7594.15757.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7594.15757.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKQ9_9PHAE)

HSP 1 Score: 267 bits (683), Expect = 4.500e-79
Identity = 127/138 (92.03%), Postives = 133/138 (96.38%), Query Frame = 1 
Query:    1 QWCGEGLAAADAAYVICTSLEPSLLSREQELLDHYHAELSRGLETRFGKPPAPQGGEGSDGAWYPSEQFVDDYRVAFLDYMRCVVSTLWKGLTPEKMERNRSSGPGMSLINRSPRHMQWMIEKATRLLDELDTLEEEK 414
            QWCGEGLAAADAAYVICTSLEPSLLSRE+ELLDHYHAELSRGLE RFGKPPAP+GG  SDGAWYPS QF DDYRVAFLDYMRCVVSTLWKGLTPEKM+RNRSSGPGMSLINRSPRHMQWMIE+ATRLLDELD+LE+EK
Sbjct:  455 QWCGEGLAAADAAYVICTSLEPSLLSRERELLDHYHAELSRGLEARFGKPPAPEGGGDSDGAWYPSGQFADDYRVAFLDYMRCVVSTLWKGLTPEKMDRNRSSGPGMSLINRSPRHMQWMIERATRLLDELDSLEKEK 592
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BLAST of mRNA_E_fasciculatus_S2_contig7594.15757.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDB8_ECTSI)

HSP 1 Score: 263 bits (671), Expect = 1.320e-78
Identity = 125/138 (90.58%), Postives = 131/138 (94.93%), Query Frame = 1 
Query:    1 QWCGEGLAAADAAYVICTSLEPSLLSREQELLDHYHAELSRGLETRFGKPPAPQGGEGSDGAWYPSEQFVDDYRVAFLDYMRCVVSTLWKGLTPEKMERNRSSGPGMSLINRSPRHMQWMIEKATRLLDELDTLEEEK 414
            +WCGEGLAA DAAYVICTSLEPSLLSRE+ELLDHYHAELSRGLE RFGKP AP+GG GSDGAWYPS QF DDYRVAFLDYMRCVVSTLWKGLTPEKM+RNRSSGPGMSLINRS RHMQWMIEKATRLLDELD+LEE+K
Sbjct:  337 EWCGEGLAATDAAYVICTSLEPSLLSRERELLDHYHAELSRGLEARFGKPSAPEGGGGSDGAWYPSGQFADDYRVAFLDYMRCVVSTLWKGLTPEKMDRNRSSGPGMSLINRSARHMQWMIEKATRLLDELDSLEEDK 474
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BLAST of mRNA_E_fasciculatus_S2_contig7594.15757.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9XU18_MICPS)

HSP 1 Score: 72.0 bits (175), Expect = 1.250e-9
Identity = 43/133 (32.33%), Postives = 64/133 (48.12%), Query Frame = 1 
Query:    1 QWCGEGLAAADAAYVICTSLEPSLLSREQELLDHYHAELSRGLETRFGKPPAPQGGEGSDGAWYPSEQFVDDYRVAFLDYMRCVVSTLWKGLTPEKMERNRSSGPGMSLINRSPRHMQWMIEKATRLLDELDT 399
            QW G G  A D  Y + TSL    L+R  EL++ YHAEL+R L  R         G  +    + +    +D  V   DY+R    +++  LTPE+M  N        +  RS  H+ W++ KA R LD +++
Sbjct:  237 QWVGPGAVAHDLLYFLATSLSMDALTRVDELVEAYHAELTRRLRAR---------GHHAAADAFTATDLREDLDVHAADYLRYCAGSVFGELTPERMAHNAPK-QNYGIARRSMPHLTWLVRKAARALDAMES 359
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BLAST of mRNA_E_fasciculatus_S2_contig7594.15757.1 vs.
Match: CHK (domain-containing protein (Fragment) n=3 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2VE03_LEPSM)

HSP 1 Score: 66.6 bits (161), Expect = 3.870e-8
Identity = 44/135 (32.59%), Postives = 71/135 (52.59%), Query Frame = 1 
Query:    1 QWCGEGLAAADAAYVICTSLEPSLLSREQELLDHYHAELSRGLETRFGKPPAPQGGEGSDGAWYPSEQFVDDYRVAFLDYMRCVVSTLWKGLTPEKMERNRSSGPGMSLINRSPRHMQWMIEKATRLLDELDTLE 405
            QW G+G    D  YV+ TSL+ S L +   L+D+Y  ELS+ L              G     Y + +    + + + DY+R +V+ +WK LT + ME N+    G S+INRS +H+ ++I++   L+ E D L+
Sbjct:  285 QWTGKGHPLQDVVYVLTTSLDSSCLPQMNNLVDYYIEELSKYL--------------GDKSLNYSTLR--SQFDLVWCDYVRVIVTGIWKKLTLQSMESNKEK-IGPSMINRSIKHVLFIIKRLHGLIIEKDILD 402
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7594.15757.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized4.500e-7992.03protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.320e-7890.58protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Hypothetical1.250e-932.33protein (Fragment) n=1 Tax=Micromonas pusilla TaxI... [more]
CHK3.870e-832.59domain-containing protein (Fragment) n=3 Tax=Lepeo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7594contigE_fasciculatus_S2_contig7594:653..2866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score264.6
Seed ortholog evalue2.6e-68
Seed eggNOG ortholog2880.D8LDB8
Model size1517
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs2E71V@1,2SDPS@2759
Cds size417
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842420.5725076-CDS-E_fasciculatus_S2_contig7594:652..8971696842420.5725076-CDS-E_fasciculatus_S2_contig7594:652..897Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7594 653..897 +
1696842420.5857794-CDS-E_fasciculatus_S2_contig7594:1261..13321696842420.5857794-CDS-E_fasciculatus_S2_contig7594:1261..1332Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7594 1262..1332 +
1696842420.6037848-CDS-E_fasciculatus_S2_contig7594:1616..17171696842420.6037848-CDS-E_fasciculatus_S2_contig7594:1616..1717Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7594 1617..1717 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842420.6252356-UTR-E_fasciculatus_S2_contig7594:1717..25341696842420.6252356-UTR-E_fasciculatus_S2_contig7594:1717..2534Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7594 1718..2534 +
1696842420.63763-UTR-E_fasciculatus_S2_contig7594:2583..28661696842420.63763-UTR-E_fasciculatus_S2_contig7594:2583..2866Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7594 2584..2866 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7594.15757.1prot_E_fasciculatus_S2_contig7594.15757.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7594 653..1717 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7594.15757.1

>prot_E_fasciculatus_S2_contig7594.15757.1 ID=prot_E_fasciculatus_S2_contig7594.15757.1|Name=mRNA_E_fasciculatus_S2_contig7594.15757.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=139bp
QWCGEGLAAADAAYVICTSLEPSLLSREQELLDHYHAELSRGLETRFGKP
PAPQGGEGSDGAWYPSEQFVDDYRVAFLDYMRCVVSTLWKGLTPEKMERN
RSSGPGMSLINRSPRHMQWMIEKATRLLDELDTLEEEK*
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mRNA from alignment at E_fasciculatus_S2_contig7594:653..2866+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7594.15757.1 ID=mRNA_E_fasciculatus_S2_contig7594.15757.1|Name=mRNA_E_fasciculatus_S2_contig7594.15757.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2214bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7594:653..2866+ (Ectocarpus fasciculatus EfasUO2)
CAGTGGTGCGGGGAAGGGCTAGCAGCAGCGGACGCCGCTTATGTCATCTG
CACCAGCCTGGAACCATCGCTCTTGTCGAGGGAGCAAGAGCTGCTCGACC
ACTACCACGCCGAGTTGTCCCGGGGCTTAGAGACGCGCTTCGGCAAACCG
CCGGCGCCGCAGGGGGGGGAAGGTAGCGATGGTGCCTGGTACCCGTCGGA
GCAATTCGTGGACGACTATCGGGTTGCGTTTCTAGACTACATGAGGTGAG
AGAGGGCAGGCTGAGAAGAGTTGCATTTGCATGCGGGGCGGAAAGGTTAC
TCATGTCTGGCAATGTCGCCGCTCTTTTTTGCCCGACGACGTTTTTGCGG
ACTGCTGTAAAAGGCTCCCATGAGAGACAGAGGAAGCGGGATAAATTAAA
CTTAGATGTTGAAACGTCGAAATTGGGAGCGGGAGATAAGCAAGTGTTCT
ACGCGCCGCTGTTGTTGGTGCACCCGCCGGTGTCGCTTCCCCGCTGGCGC
ATCGTACTTGCCTCCTTGTTCTGCACGAGCATGTCTGCCATTTACCATCA
GCACGCGGCGTCCCCGCTCTCTGTTTCACTGCCTTGCCGGCACAAATAAC
ACTCATCAGGTGCGTGGTCAGCACGCTGTGGAAAGGGCTGACGCCCGAGA
AGATGGAGAGAAATCGCTCCTCCGGACCCGGTAAGTACGGGGAGGGGGGC
GTCTCTTATGCCTTAGAGGTTAGATTGTTGACCACGCGTCCTCGAGAGGA
CGGAAAGTTTGGGGTGCGAACATAAAGCAGACCAAACGCTGCAGCTGCTG
CACCTAGTGGCTACCGCCTGCTTTGTGGCTCTTTTTTGGTACAACCCTCG
TCCTCACGTAGTAGCAGTACGAGCACACCAAGTTGCTGGCACAAGGGCTG
GCGCAAGTGTTGACGTGTTTACCGCCGACCCGCCGGACTCTGCTCTGTTC
CGATCTTGACCCAGGTATGAGCCTGATCAACCGCTCACCTCGACACATGC
AGTGGATGATCGAGAAAGCGACAAGACTCTTGGACGAGCTCGACACCCTT
GAGGAGGAAAAATAGCGACGACTTTGTGCATGTTTAAAAGTCAGCTAGCG
TAGGGAAGTTGGGCCCAAACAGCGCTGGGTAGAGGTCATACCTTTGCGAC
GAAGACCCACAAGCCGATGTTGCACTTCGCTTTTCGAGAACCCGTCCTGG
TCTTGGGCACGTTGACGTGCGGTATCTTGCGTGTCTCGCGGTTGCATAAG
GAGTCGTGCTTGTTATGTGGTATGGATACGCATTTCCGGATTTCCTTCGG
GGCGTGAACATGACCCGCGGTCGCATCTCCCAGTAAGATAGCCGAGACCC
CGATTCTTTCGAGGAGAAAGTCTGGAGGTTGAGGTGTCTCGAACCAGCGC
ACAGCACGTGAACCTCCTGTTCTGCGCAATCCTGAAGATCTTATCCTGAA
GATTTCTTTTGTACGTGTTAGTTTGGTTTGCCAACAAGTTTATATATAGG
TTTCAGTATGGGGTCGGGTTCTTGTGTTTCGAGGTGCTTGACCCTCGCGA
CACACAACCGTACGTTGTTACATAACTGCGGTGCGGGGCTTTTGTGCTGT
ACGCGTGTTTTCATGCCCAAGCGTTTTGTTGTACTTGAATGCCCGTTGAC
GAAAGACAGGCACAACAGCAGTAGTGGCAAAGGTTGGTGATCGGCTACGG
CAGTAGTAGTACCGTTAGAGGCGGAGAGGTGGCACAAAGCGGAGATAGCA
TATGGCACCGGGCGGGGTACGCAAAACAAAGGAACGACATCGTATTTTAT
TTCCGATTTCCGCACACGGGCCAATGAGATCGCACCCCAGGTACCATCTC
GCCGACCCAAGATAGATGAGAGTTTCACAGGTGTGGGAAATGGGCCACTT
TTTGAGCTGCTTGTGAGGAACACGTGGGGAGCGTGGTGAGGGCATGTTAT
CATCAAGGCGACACTCCAGTCACGGTTGTCGCAGCACCAAGGTAGGTCAC
TGCTGTGTGCATGGAAATGGGCATCGTACCGGTCTGTCTGAGTGATACAA
CCGCGGTCTGCCCTCATAAAGCTTTAGGATGGTTGAATGATATTTCCACA
CCGAGGTCGGTGAGATGGCACCTGTCGGAGAGATATGTAGATCCCACCGG
GTTGCGACGAAGACTAAGACTCAAAAACGATCGTACCCACAGCAGTAGTG
GCATCTCTCCGCCT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7594:653..2866+

>mRNA_E_fasciculatus_S2_contig7594.15757.1 ID=mRNA_E_fasciculatus_S2_contig7594.15757.1|Name=mRNA_E_fasciculatus_S2_contig7594.15757.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=417bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7594:653..2866+ (Ectocarpus fasciculatus EfasUO2)
CAGTGGTGCGGGGAAGGGCTAGCAGCAGCGGACGCCGCTTATGTCATCTG
CACCAGCCTGGAACCATCGCTCTTGTCGAGGGAGCAAGAGCTGCTCGACC
ACTACCACGCCGAGTTGTCCCGGGGCTTAGAGACGCGCTTCGGCAAACCG
CCGGCGCCGCAGGGGGGGGAAGGTAGCGATGGTGCCTGGTACCCGTCGGA
GCAATTCGTGGACGACTATCGGGTTGCGTTTCTAGACTACATGAGGTGCG
TGGTCAGCACGCTGTGGAAAGGGCTGACGCCCGAGAAGATGGAGAGAAAT
CGCTCCTCCGGACCCGGTATGAGCCTGATCAACCGCTCACCTCGACACAT
GCAGTGGATGATCGAGAAAGCGACAAGACTCTTGGACGAGCTCGACACCC
TTGAGGAGGAAAAATAG
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