mRNA_E_fasciculatus_S2_contig759.15752.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig759.15752.1
Unique NamemRNA_E_fasciculatus_S2_contig759.15752.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig759.15752.1 vs.
Match: Protein (YIPF n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ4_ECTSI)

HSP 1 Score: 279 bits (713), Expect = 3.870e-92
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 1
Query:    1 DDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGMFGCIATAMVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAAMGIVTDLRGNLGHVLGLVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 405
            DDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGMFGCIATAMVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAAMGIVTDLRGNLGHVLG VAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY
Sbjct:  211 DDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGMFGCIATAMVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAAMGIVTDLRGNLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 345          
BLAST of mRNA_E_fasciculatus_S2_contig759.15752.1 vs.
Match: Protein (YIPF n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG11_9PHAE)

HSP 1 Score: 279 bits (713), Expect = 4.120e-92
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 1
Query:    1 DDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGMFGCIATAMVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAAMGIVTDLRGNLGHVLGLVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 405
            DDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGMFGCIATAMVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAAMGIVTDLRGNLGHVLG VAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY
Sbjct:  213 DDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGMFGCIATAMVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAAMGIVTDLRGNLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 347          
BLAST of mRNA_E_fasciculatus_S2_contig759.15752.1 vs.
Match: Protein (YIPF n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6H4_9STRA)

HSP 1 Score: 194 bits (493), Expect = 2.170e-60
Identity = 89/135 (65.93%), Postives = 110/135 (81.48%), Query Frame = 1
Query:    1 DDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGMFGCIATAMVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAAMGIVTDLRGNLGHVLGLVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 405
            D+TDLAGPLVF L FG CLLL GK HFGYIYGFG FGC A ++VLNL+G++PID W+TTSVLGYCLLPV+ L+A+GI  DL G +G  L   AVAW   +AT+LFE+YL+MR QR+L+AYP+GLLY CFVL+ ++
Sbjct:   91 DETDLAGPLVFALVFGTCLLLAGKLHFGYIYGFGAFGCGALSLVLNLMGDRPIDAWRTTSVLGYCLLPVVLLSAVGIALDLSGRVGLALAGAAVAWSCTAATKLFEQYLDMRHQRWLIAYPIGLLYCCFVLMAIF 225          
BLAST of mRNA_E_fasciculatus_S2_contig759.15752.1 vs.
Match: Protein (YIPF n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DM30_9EUKA)

HSP 1 Score: 175 bits (443), Expect = 2.030e-53
Identity = 78/134 (58.21%), Postives = 102/134 (76.12%), Query Frame = 1
Query:    4 DTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGMFGCIATAMVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAAMGIVTDLRGNLGHVLGLVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 405
            D D+AGPL FCL  G CLLLTGK HFGYIYGFG+ GC+   ++LNL+ ++ ID+++T S+LGYCLLP++ LAA  IV +L+G +G     V + WCT++ATR  E  L+MR QRYLVAYP+ LLY+CF LITV+
Sbjct:   46 DADMAGPLFFCLLLGFCLLLTGKVHFGYIYGFGLIGCLGMYIILNLMSDRSIDIYRTASILGYCLLPIVSLAAASIVFNLKGYIGFSTTTVTILWCTVAATRFVEATLDMRPQRYLVAYPLMLLYSCFALITVF 179          
BLAST of mRNA_E_fasciculatus_S2_contig759.15752.1 vs.
Match: Protein (YIPF n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1N9_9STRA)

HSP 1 Score: 174 bits (442), Expect = 2.770e-52
Identity = 84/135 (62.22%), Postives = 103/135 (76.30%), Query Frame = 1
Query:    1 DDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGMFGCIATAMVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAAMGIVTDLRGNLGHVLGLVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 405
            DD DLAGPL F L FG+ LL+TGK HFGYIYGFG+ GCIA  +VLNL+  K ID+W+  S+LGY LLPVIGLA +GI   L+G +G  L  + +AW T ++TRLFE+ L M +QRYLVAYPV L+YA FVLITV+
Sbjct:  120 DDADLAGPLFFLLSFGIFLLMTGKVHFGYIYGFGVSGCIAMYLVLNLLSPKDIDVWRVCSILGYGLLPVIGLAFLGIAVSLKGGVGQGLATLTIAWSTYASTRLFEKALNMSQQRYLVAYPVALVYAIFVLITVF 254          
BLAST of mRNA_E_fasciculatus_S2_contig759.15752.1 vs.
Match: Protein (YIPF n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TR42_9EUKA)

HSP 1 Score: 166 bits (419), Expect = 1.040e-49
Identity = 80/136 (58.82%), Postives = 99/136 (72.79%), Query Frame = 1
Query:    4 DTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGMFGCIATAMVLNLIGE--KPIDLWKTTSVLGYCLLPVIGLAAMGIVTDLRGNLGHVLGLVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 405
            D D+AGPLVFCL  G CL+L  K HFGYIYGFG+ GC+    +LNL+ +  K ID+++T S+LGYCLLP++GLAA+  V  L+G LG  L    V WCTI+ATR  E  L MR QRYLVAYP+ LLY+CF LITV+
Sbjct:   49 DADMAGPLVFCLLLGFCLMLRLKMHFGYIYGFGLIGCLGMYTILNLMSDPDKSIDIFRTISILGYCLLPIVGLAALSTVLSLKGYLGFGLTAFTVLWCTIAATRFVEATLGMRDQRYLVAYPLMLLYSCFALITVF 184          
BLAST of mRNA_E_fasciculatus_S2_contig759.15752.1 vs.
Match: Yip1 (domain-containing protein n=1 Tax=Stereum hirsutum (strain FP-91666) TaxID=721885 RepID=UPI000444A1BD)

HSP 1 Score: 165 bits (417), Expect = 1.060e-49
Identity = 76/135 (56.30%), Postives = 99/135 (73.33%), Query Frame = 1
Query:    1 DDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGMFGCIATAMVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAAMGIVTDLRGNLGHVLGLVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 405
            DD DLAGPL+FC CFG  LL +GKP FGYIYG G+ G  +   +LNL+ EK ID ++ +SVLGYCLLP++G+ A+ ++  L G LG+VL LV+V WCT +A+ +F   L M  QR LVAYPVGLLY CF L++V+
Sbjct:   16 DDADLAGPLLFCFCFGTFLLFSGKPQFGYIYGVGLLGSASIYTLLNLMSEKGIDAYRVSSVLGYCLLPMVGVGALSVLVTLDGLLGYVLALVSVTWCTYAASGIFVAVLRMSDQRLLVAYPVGLLYGCFALLSVF 150          
BLAST of mRNA_E_fasciculatus_S2_contig759.15752.1 vs.
Match: Protein (YIP (Fragment) n=1 Tax=Heterobasidion irregulare (strain TC 32-1) TaxID=747525 RepID=W4K4H1_HETIT)

HSP 1 Score: 166 bits (421), Expect = 4.380e-49
Identity = 73/135 (54.07%), Postives = 101/135 (74.81%), Query Frame = 1
Query:    1 DDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGMFGCIATAMVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAAMGIVTDLRGNLGHVLGLVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 405
            DD DLAGPL+FC CFG+ LL +GKP FGYIYG G+ G ++  ++LNL+ EK ID ++  SVLGYCLLP++G+ A+ ++  L G +G+ L LV++AWCT +A+ +F   L M  QR LVAYPVGLLY CF +++V+
Sbjct:  120 DDADLAGPLLFCFCFGISLLFSGKPQFGYIYGVGLLGSMSVYLLLNLMSEKAIDAYRVASVLGYCLLPMVGVGALSVLVTLDGLVGYALSLVSIAWCTYAASGIFVTVLRMTDQRLLVAYPVGLLYGCFAMLSVF 254          
BLAST of mRNA_E_fasciculatus_S2_contig759.15752.1 vs.
Match: Protein (YIP n=2 Tax=Gigaspora TaxID=4873 RepID=A0A8H3X8E3_GIGMA)

HSP 1 Score: 166 bits (420), Expect = 4.940e-49
Identity = 76/134 (56.72%), Postives = 99/134 (73.88%), Query Frame = 1
Query:    4 DTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGMFGCIATAMVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAAMGIVTDLRGNLGHVLGLVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 405
            DTDLAGPL+FCL FG+CLLLTGK HFGYIYG  + GC +  M+LNL+ E  ID ++T SVLGYCLLP++ L+ +G+V  L G +G     +AV WCT S++ +F   L+M  QR LVAYPVG+LY CF L+T++
Sbjct:  115 DTDLAGPLLFCLIFGVCLLLTGKIHFGYIYGVALLGCFSIYMILNLMSESGIDGYRTASVLGYCLLPMVLLSCVGVVVPLSGPIGLFASALAVGWCTYSSSTMFVTVLQMSEQRILVAYPVGMLYVCFALMTIF 248          
BLAST of mRNA_E_fasciculatus_S2_contig759.15752.1 vs.
Match: Yip1-domain-containing (protein n=1 Tax=Punctularia strigosozonata (strain HHB-11173) TaxID=741275 RepID=UPI000441865B)

HSP 1 Score: 164 bits (415), Expect = 7.090e-49
Identity = 74/135 (54.81%), Postives = 101/135 (74.81%), Query Frame = 1
Query:    1 DDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGMFGCIATAMVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAAMGIVTDLRGNLGHVLGLVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 405
            DD DLAGPL+F LCFG+ LLL+GKP FGYIYG G+ G ++  M+LNL+ E  ID ++  SVLGYCLLP++G+ A+ ++  L G LG +L ++++AWCT +A+ +F   L M  QR LVAYPVGLLY CF L++V+
Sbjct:   61 DDADLAGPLLFILCFGMFLLLSGKPQFGYIYGVGLLGSMSVYMLLNLMSETGIDAYRVVSVLGYCLLPMVGVGAVSVMVTLDGLLGSILSIISIAWCTYAASGIFVAVLRMSDQRLLVAYPVGLLYGCFALLSVF 195          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig759.15752.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Protein3.870e-9299.26YIPF n=1 Tax=Ectocarpus siliculosus TaxID=2880 Rep... [more]
Protein4.120e-9299.26YIPF n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867... [more]
Protein2.170e-6065.93YIPF n=1 Tax=Tribonema minus TaxID=303371 RepID=A0... [more]
Protein2.030e-5358.21YIPF n=1 Tax=Amorphochlora amoebiformis TaxID=1561... [more]
Protein2.770e-5262.22YIPF n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7... [more]
Protein1.040e-4958.82YIPF n=1 Tax=Lotharella oceanica TaxID=641309 RepI... [more]
Yip11.060e-4956.30domain-containing protein n=1 Tax=Stereum hirsutum... [more]
Protein4.380e-4954.07YIP (Fragment) n=1 Tax=Heterobasidion irregulare (... [more]
Protein4.940e-4956.72YIP n=2 Tax=Gigaspora TaxID=4873 RepID=A0A8H3X8E3_... [more]
Yip1-domain-containing7.090e-4954.81protein n=1 Tax=Punctularia strigosozonata (strain... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig759contigE_fasciculatus_S2_contig759:26070..27699 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score275.4
Seed ortholog evalue1.4e-71
Seed eggNOG ortholog2880.D7FRQ4
Preferred nameYIPF4
Model size408
KEGG koko:K20363
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005886,GO:0012505,GO:0016020,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0071944
Exons3
EggNOG free text desc.vesicle-mediated transport
EggNOG OGsCOG5080@1,KOG3103@2759
Cds size408
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842420.1713436-CDS-E_fasciculatus_S2_contig759:26069..262981696842420.1713436-CDS-E_fasciculatus_S2_contig759:26069..26298Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig759 26070..26298 -
1696842420.1898894-CDS-E_fasciculatus_S2_contig759:26712..268191696842420.1898894-CDS-E_fasciculatus_S2_contig759:26712..26819Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig759 26713..26819 -
1696842420.2025824-CDS-E_fasciculatus_S2_contig759:27627..276991696842420.2025824-CDS-E_fasciculatus_S2_contig759:27627..27699Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig759 27628..27699 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig759.15752.1prot_E_fasciculatus_S2_contig759.15752.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig759 26070..27699 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig759.15752.1

>prot_E_fasciculatus_S2_contig759.15752.1 ID=prot_E_fasciculatus_S2_contig759.15752.1|Name=mRNA_E_fasciculatus_S2_contig759.15752.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=136bp
DDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGMFGCIATAMVLNLIGE
KPIDLWKTTSVLGYCLLPVIGLAAMGIVTDLRGNLGHVLGLVAVAWCTIS
ATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY*
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mRNA from alignment at E_fasciculatus_S2_contig759:26070..27699-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig759.15752.1 ID=mRNA_E_fasciculatus_S2_contig759.15752.1|Name=mRNA_E_fasciculatus_S2_contig759.15752.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1630bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig759:26070..27699- (Ectocarpus fasciculatus EfasUO2)
GACGACACGGACCTGGCTGGCCCGCTCGTGTTCTGCTTGTGCTTCGGGCT GTGCCTGCTCTTGACAGGAAAGGTGAGCGAAGCCACGAACATTTTCAGGG ACGGCGGGGCTGGTAAAGCAGAGCAGGTGGACAGGATGACGGCAGCATAT CGACGCGTGTGTGAAACGTACCAGCGGCGACACCGGCGATATATGTGGTG CTGCTGCTCGAGTCCCAAGCTTCAGTATGCACATTGAACCATATATTTTT CTTTTTTGATGGTGGTGCGCGCAAGTGCAGCAGCGTGTGCACAGCTGCAA TACTTCCGTGTATGACACCAAAGCTCGGGTTACGCGAATTCCTGTGCATT TGGAAGCCATGGACGAGTGCGCGAGGCGTGTAACATGGGCAGATATCTCA TGCATCGCTAGGGCCGGATAGGTTGAAGAAGGAAAGACAACTTACCACCG CCGCCAAATAGCAGGCACTCAGAAGAGGCCAGGGCGGGCGCTTCAAAAGA TTGCCCGCATGTTGTACTTCCGTGTGTGTGTGTGTGCCGCTGACGAGAAG GCTACGTAGTGAATTGGTGTTCATCTTACTCCCCCCCTTTCACGATCGTT GCGGCACCTGTGTCGGAAGCTGGGGCTACTTGCACACTCCAGCGACTCCT GGAGGAGCGAGGGGCGACCCCTGAGTTTTTGCCCGCGCAGCGTTTGGCGT TGTACAATCGACCTCGTGGTAGTACGACCCTAATAACTGCAGCGCTATCC TCCCCCCCCGTGCGCCTTTCTTCGACCTTGCCCCGTGGTGAGTGATGTTA CCATGTTTTCTTCAACTGCTGCGGTCTTACGACCCCCTGCCTGCCCAAAT CACCCTACCGTTGTCTGGCGTCAACCGCAGCCACACTTTGGGTACATCTA TGGGTTTGGAATGTTCGGGTGCATCGCGACGGCGATGGTGCTCAACCTAA TTGGAGAAAAGCCGATTGACCTCTGGAAAACCACAAGGTGTGTGCCCCGG CCCCCTTTACCCCACACCGCGCCCCTCTTCCTCGCCAGCAGAGAACTCGT ACGTACTCCGAAGAACACGCGTCAATCCTGTATTTTGGCTTCAGGCACTT TGTTGGTGGTGGATGGCCGGAAGGGGTGATGTTTGCACCTATTTAGTGGT GCTGCTGTGGCAGTTGTTTGAGGTGTGCGGAAGGCATTGAAGAATGTGGT AGGCCGTTGTCGTGTCCGCGCGATGGTCAAACCGTAGGCGTAGGCAGCGC CAGAGGTGAATGAGCTGCTGGTTCTTGCCTTTTCCTCACATCTTCCATTC TACCTGTGTGCGAGCACAGAGCAGCACTGAGGCCACCTACCCTCGCGCAA TAGCCAACCCGACCTGACCCCTCCCTCCCCCCCGACAATCCAACGATGCA GTGTTCTGGGATACTGCCTCTTGCCGGTCATCGGCTTAGCGGCGATGGGG ATAGTGACGGACCTTCGTGGGAACTTGGGGCACGTGCTGGGTCTCGTCGC GGTGGCCTGGTGCACTATTTCGGCCACCCGCTTGTTCGAGGAGTATCTTG AGATGCGAAGACAGCGGTATCTCGTGGCCTACCCTGTAGGCCTGCTGTAC GCTTGTTTCGTTCTAATCACGGTTTACTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig759:26070..27699-

>mRNA_E_fasciculatus_S2_contig759.15752.1 ID=mRNA_E_fasciculatus_S2_contig759.15752.1|Name=mRNA_E_fasciculatus_S2_contig759.15752.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=408bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig759:26070..27699- (Ectocarpus fasciculatus EfasUO2)
GACGACACGGACCTGGCTGGCCCGCTCGTGTTCTGCTTGTGCTTCGGGCT
GTGCCTGCTCTTGACAGGAAAGCCACACTTTGGGTACATCTATGGGTTTG
GAATGTTCGGGTGCATCGCGACGGCGATGGTGCTCAACCTAATTGGAGAA
AAGCCGATTGACCTCTGGAAAACCACAAGTGTTCTGGGATACTGCCTCTT
GCCGGTCATCGGCTTAGCGGCGATGGGGATAGTGACGGACCTTCGTGGGA
ACTTGGGGCACGTGCTGGGTCTCGTCGCGGTGGCCTGGTGCACTATTTCG
GCCACCCGCTTGTTCGAGGAGTATCTTGAGATGCGAAGACAGCGGTATCT
CGTGGCCTACCCTGTAGGCCTGCTGTACGCTTGTTTCGTTCTAATCACGG
TTTACTGA
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