mRNA_E_fasciculatus_S2_contig7583.15744.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7583.15744.1
Unique NamemRNA_E_fasciculatus_S2_contig7583.15744.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7583.15744.1 vs.
Match: Ribosome (biogenesis protein WDR12 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI35_ECTSI)

HSP 1 Score: 486 bits (1250), Expect = 2.110e-164
Identity = 245/278 (88.13%), Postives = 255/278 (91.73%), Query Frame = 3
Query:    3 NASLEAAAILRGHDNSISAAHAAGSGS-ESGGAPRAYTGDWSGHVCVWDVACLEGGHADGDDNGSGVGSAPQGTKRRKTDKGAAAPA---VSELTPMADFRAHAQAVTGLAGPGGVGGPQAAAVVVPSSTLYSASLDRAVKTWDAERQDCLHTLNAPKAVTCLGCSESGRMLATGHPDARVRIWDTRTQGETITRASLSSHKQWVTDVKWAPGSETMVLSCGHDGAVKLWDIRSTLPLHSAQAHQGKALCCGWQEGKIVSGGEDGAVKTYVVPERNHD 824
            N+SLEAAAILRGH NSISAAHAA SGS +SGGAPRAYTGDWSGHVC+WDVACLEGGHADGDD         QGTKRRKTD GAAA     V+ELTP+A FRAHAQAVTGLAGPGGVG PQ AAVVVPSSTLYSASLDRAVKTWDAERQDCLHTLNAPKAVTCLGCS+SGRMLATGHPDARVRIWDTRTQGET+TRASLSSHKQWVT VKWAPGSETMVLSC HDG+VKLWDIRSTLPLHSAQAH+GKALCCGWQ+GKIVSGGEDGAVKTYVVPERNHD
Sbjct:  196 NSSLEAAAILRGHANSISAAHAAASGSGDSGGAPRAYTGDWSGHVCLWDVACLEGGHADGDD--------AQGTKRRKTDTGAAAXXXXXVTELTPLASFRAHAQAVTGLAGPGGVGRPQTAAVVVPSSTLYSASLDRAVKTWDAERQDCLHTLNAPKAVTCLGCSDSGRMLATGHPDARVRIWDTRTQGETLTRASLSSHKQWVTGVKWAPGSETMVLSCSHDGSVKLWDIRSTLPLHSAQAHRGKALCCGWQDGKIVSGGEDGAVKTYVVPERNHD 465          
BLAST of mRNA_E_fasciculatus_S2_contig7583.15744.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ32_9PHAE)

HSP 1 Score: 392 bits (1007), Expect = 1.660e-131
Identity = 191/206 (92.72%), Postives = 198/206 (96.12%), Query Frame = 3
Query:  216 GTKRRKTDKGAAAPAVS---ELTPMADFRAHAQAVTGLAGPGGVGGPQAAAVVVPSSTLYSASLDRAVKTWDAERQDCLHTLNAPKAVTCLGCSESGRMLATGHPDARVRIWDTRTQGETITRASLSSHKQWVTDVKWAPGSETMVLSCGHDGAVKLWDIRSTLPLHSAQAHQGKALCCGWQEGKIVSGGEDGAVKTYVVPERNHD 824
            GTKRRKTD GAAA AV+   ELTP+A FRAH+QAVTGL GPGGVGGPQ AAVVVPSSTLYSASLDRAVKTWDAERQDCLHTLNAPKAVTCLGCS+SGRMLATGHPDARVRIWDTRTQGET+TRASLSSHKQWVTDVKWAPGSETMVLSCGHDGAVKLWDIRSTLPLHSAQAHQGKALCCGWQ+GKIVSGGEDGAVKTYVVPERN+D
Sbjct:   10 GTKRRKTDTGAAAAAVAAVTELTPLAGFRAHSQAVTGLVGPGGVGGPQTAAVVVPSSTLYSASLDRAVKTWDAERQDCLHTLNAPKAVTCLGCSDSGRMLATGHPDARVRIWDTRTQGETLTRASLSSHKQWVTDVKWAPGSETMVLSCGHDGAVKLWDIRSTLPLHSAQAHQGKALCCGWQDGKIVSGGEDGAVKTYVVPERNND 215          
BLAST of mRNA_E_fasciculatus_S2_contig7583.15744.1 vs.
Match: Ribosome (biogenesis protein WDR12 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE58_9STRA)

HSP 1 Score: 186 bits (473), Expect = 9.820e-49
Identity = 114/274 (41.61%), Postives = 149/274 (54.38%), Query Frame = 3
Query:   15 EAAAILRGHDNSISAAHAAGSGSESGGAPRAYTGDWSGHVCVWDVACLEGGH-ADGDDNGSGVGSAPQGTKRRKTDKGAAAPAVSELTPMADFRAHAQAVTG--LAGPGGVGGPQAAAVVVPSSTLYSASLDRAVKTWDAERQDCLHTLNAPKAVTCLGC------SESGRMLATGHPDARVRIWDTRTQ-GETITRASLSSHKQWVTDVKWAPGSETMVLSCGHDGAVKLWDIRSTLPLHSAQAHQGKALCCGWQEGKIVSGGEDGAVKTYVV 806
            E AA+L GH NS++A     S S +GG   A +GDW G +C+WD+A  +G   AD +  G GV       KRRK   G A   V EL P A F+AH+QAVTG  LAGP                TLY+ S D ++K WDA+RQDC+ T+   KAV C+        + +  +LATGHPD R+R+WD RT+ GET+T A+L++   WV  VKWA GS                   S   L +  AH+G ALC  W  G + SGG+DG V+T+ V
Sbjct:  243 EQAAVLSGHQNSVAAV----SFSPAGGTHTAASGDWDGRMCLWDLAAAQGAAGADAEAGGPGV-------KRRKRAAGEADAVVVELEPTAVFKAHSQAVTGVYLAGP---------------DTLYTGSWDHSLKAWDAQRQDCVRTMACAKAVACMDAQGGDDAAAASGLLATGHPDGRIRVWDVRTKAGETLTLATLAARGGWVYGVKWAHGSAYNXXXXXXXXXXXXXXXXSGAALRTLPAHKGAALCVAWHAGGVASGGDDGVVRTFKV 490          
BLAST of mRNA_E_fasciculatus_S2_contig7583.15744.1 vs.
Match: Ribosome (biogenesis protein WDR12 homolog n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q0R3_9STRA)

HSP 1 Score: 150 bits (379), Expect = 6.080e-36
Identity = 82/236 (34.75%), Postives = 126/236 (53.39%), Query Frame = 3
Query:  111 TGDWSGHVCVWDVACLEGGHADGDDNGSGVGSAPQGTKRRKTDKGAAAPAVSELTPMADFRAHAQAVTGLAGPGGVGGPQAAAVVVPSSTLYSASLDRAVKTWDAERQDCLHTLNAPKAVTCLGCSESGRMLATGHPDARVRIWDTRT----QGETITRASLSSHKQWVTDVKWAPGSETMVLSCGHDGAVKLWDIRSTLPLHSAQAHQ--GKALCCGWQEGKIVSGGEDGAVKTY 800
            +GDW G +C+W V              S    + +  ++R+     A  AV E +P   F+AH+  ++G++                S+T+ ++S D ++KTWD E Q+ + TLN  K VT LG   +  ++ATGHPD  VR+WD R+    +G         SH+ W++ V+W+P    ++ S  HDG+VK+WDIRS++PLH+ +AH    KALC  + E  I SGG D  VK +
Sbjct:  249 SGDWDGGLCIWKVP-------------SDTNESAKPREKRRKGSSDANDAVREASPFYCFKAHSNNISGISWSS-----------ESSNTIITSSWDHSIKTWDVESQNNILTLNGSKVVTALGRCHNSDVVATGHPDCTVRLWDMRSSSKNEGNVFDNTLRPSHRSWISAVEWSPVDPFVMASTSHDGSVKVWDIRSSVPLHTIKAHAKGSKALCLSFTEKAIFSGGSDCIVKQF 460          
BLAST of mRNA_E_fasciculatus_S2_contig7583.15744.1 vs.
Match: Ribosome (biogenesis protein WDR12 homolog n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GAP8_9STRA)

HSP 1 Score: 147 bits (372), Expect = 1.500e-34
Identity = 86/270 (31.85%), Postives = 132/270 (48.89%), Query Frame = 3
Query:   36 GHDNSISAAHAAGSGSESGGAPRAYTGDWSGHVCVWDVAC-----LEGGHADGDDNGSGVGSAPQGTKRRKTDKGAAAPAVSELTPMADFRAHAQAVTGLAGPGGVGGPQAAAVVVPSSTLYSASLDRAVKTWDAERQDCLHTLNAPKAVTCLGCSESGRMLATGHPDARVRIWDTRTQGETITRASLSSHKQWVTDVKWAPGSETMVLSCGHDGAVKLWDIRSTLPLHSAQAHQGKALCCGWQEG--KIVSGGEDGAVKTYVVPERNHD 824
            GH+ S+ A  A     + G      +G W   VC+W VA      +     +G+D G     + +  K+RK     AA A+  + P +    H  +V+ L      G P         STL+S S DR+++ WD  R+ C   LN  K VT +  + +   +ATGH D +VR+WD+R  GE I + SL SH+ W+T V+W+P    ++ S   D  +KLWD+RS++PLH+ ++H  K     W      ++S G D  ++ Y V     D
Sbjct:  279 GHERSVEALDAV----QIGNFAVMGSGGWDQSVCIWKVALGNEDDVTAAKEEGEDEGDAANGSDR--KKRKVKGAKAASALKTVKPASVLSGHTDSVSALTW-ADRGSP---------STLFSGSWDRSIRAWDVVREVCTIKLNGNKVVTAIAHNPTTATIATGHADEQVRLWDSRVTGEAIVKLSLKSHEAWITSVQWSPSRPHLLASASQDQTIKLWDVRSSVPLHTLKSHTNKVFGLSWDASGTMLMSAGADSMLRAYRVGTEKSD 532          
BLAST of mRNA_E_fasciculatus_S2_contig7583.15744.1 vs.
Match: Hypothetical (protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SDZ9_9STRA)

HSP 1 Score: 147 bits (371), Expect = 1.800e-34
Identity = 93/255 (36.47%), Postives = 128/255 (50.20%), Query Frame = 3
Query:  111 TGDWSGHVCVWDVACLEGGHADGDDNGSGVGSAPQGTKRRKTDKGA-------------AAPAVSELTPMADFRAHAQAVTGLAGPGGVGGPQAAAVVVPSSTLYSASLDRAVKTWDAERQDCLHTLNAPKAVTCLGCSESGRMLATGHPDARVRIWDTRT------QGETITRASLS----SHKQWVTDVKWAPGSETMVLSCGHDGAVKLWDIRSTLPLHS--AQAHQGKALCCGWQEGKIVSGGEDGAVKTY 800
            +GDW G +C W +  L GG     D G  V +   G K                     AA +V E+ P +  RAH   ++GL+      G          +TL + S D +VK WD E+ DC+ TLN  + VT LG   +  ++ATGHPD  VR+WD RT        ++ T+ S S    SHK WV+ V+W+P    ++ S  HDG VK+WDIRS+LPLH+  AQ    K LC  + +G I SGG D  V+ +
Sbjct:  280 SGDWDGGLCFWKIPSLSGGG----DGGMNVDNVDAGKKXXXXXXXXXXXXXXXXXXXXEAAISVVEVQPFSTIRAHNSNLSGLSFGYNSSG----------NTLLTGSWDHSVKVWDIEKSDCILTLNGARVVTSLGRCHNSDVVATGHPDCTVRLWDMRTGMNASNSKQSSTQVSDSILKPSHKSWVSAVEWSPTDPYVLASTSHDGTVKMWDIRSSLPLHTIRAQPKGQKGLCLAYGDGAIYSGGSDCIVRKF 520          
BLAST of mRNA_E_fasciculatus_S2_contig7583.15744.1 vs.
Match: Ribosome (biogenesis protein YTM1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K4H4_FISSO)

HSP 1 Score: 145 bits (366), Expect = 3.520e-34
Identity = 94/277 (33.94%), Postives = 136/277 (49.10%), Query Frame = 3
Query:   15 EAAAILRGHDNSISAAHAAGSGSESGGAPRAYTGDWSGHVCVWDVACLEGGHADGDDNGSGVGSAPQGTKRRKTDKGA-AAPAVSELTPMADFRAHAQAVTGLAGPGGVGGPQAAAVVVPSSTLYSASLDRAVKTWDAERQDCLHTLNAPKAVTCLGCSESGRMLATGHPDARVRIWDTRTQGETIT-----RASLSSHKQWVTDVKWAPGSETMVLSCGHDGAVKLWDIRSTLPLHSAQAH-QGKALCCGWQEGKIVSGGEDGAVKTYVVPERNHD 824
            + A+ + GH+ +IS+A       + G + +  +GDW G + +W++      + D  +  +         K+ K DK +  A     LTP    +AH+  +TG+A                S  + + S D ++K W+ ERQDCL TLN+ + VTCL  S     LATGHPD  VR+WD RT+ ET +          SHK WV+ V+W    + +  S  HDG VK WDIRS+LPLHS +A  + K L        I  GG D  VK   +P+   D
Sbjct:  212 QVASCIEGHNAAISSA-------DFGSSSQLASGDWGGELYLWNL------NQDISEQAT--------VKKAKKDKSSETASHFRSLTPTGSMKAHSSQITGIAWNS-------------SDQMITGSWDHSIKVWNVERQDCLLTLNSSRVVTCLDASRVSAALATGHPDCTVRLWDVRTKSETSSWSVSDNTFRPSHKAWVSAVQWFDAYQLVTTS--HDGMVKWWDIRSSLPLHSIRAFSKNKGLALSTTSSAIYVGGTDNRVKRLQIPQSGMD 452          
BLAST of mRNA_E_fasciculatus_S2_contig7583.15744.1 vs.
Match: Ribosome (biogenesis protein WDR12 homolog n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L654_9EUKA)

HSP 1 Score: 143 bits (360), Expect = 1.610e-33
Identity = 86/253 (33.99%), Postives = 127/253 (50.20%), Query Frame = 3
Query:   36 GHDNSISAAHAAGSGSESGGAPRAYTGDWSGHVCVWDVACLEGGHADGDDNGSGVGSAPQGTKRRKTDKGAAAPAVSELTPMADFRAHAQAVTGLAGPGGVGGPQAAAVVVPSSTLYSASLDRAVKTWDAERQDCLHTLNAPKAVTCLGCSESGRMLATGHPDARVRIWDTRTQGETITRASLSSHKQWVTDVKWAPGSETMVLSCGHDGAVKLWDIRSTLPLHSAQAHQGKALCCGWQ-EGKIVSGGEDGAV 791
            GH +S+ AA A  +G       R  +G W G +C+W         A+ D   +         KR +T      PAVSE  P++  +AH++ ++GL                 ++ LYSAS D  V+ WD   +     + + KAV CL  S +   + TGH D  +R+WD R +G  ++     +HK WV+ V WAP    ++ S  HDG+V+LWD RST+PLH   AH+ K+LC  W    ++VSGG DG +
Sbjct:  215 GHTDSVEAACANPAGD------RFCSGGWDGQLCIWRAPDTSVSTAEVDHEPA--------AKRART------PAVSEAHPLSKMQAHSECLSGLCWR-------------TAALLYSASWDGTVREWDVNAESSTSAVTSQKAVLCLDVSLASASIVTGHSDHCLRVWDVRQRG--LSARLTLAHKSWVSGVAWAPHQPLLLASASHDGSVRLWDTRSTVPLHELPAHKPKSLCVSWDGSDRLVSGGADGVL 432          
BLAST of mRNA_E_fasciculatus_S2_contig7583.15744.1 vs.
Match: Ribosome (biogenesis protein WDR12 homolog n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IFE5_KLENI)

HSP 1 Score: 142 bits (358), Expect = 2.370e-33
Identity = 95/264 (35.98%), Postives = 132/264 (50.00%), Query Frame = 3
Query:   27 ILRGHDNSISAAHAAGSGSESGGAPRAYTGDWSGHVCVWDVACLEGGHADGDDNGSGVGSAPQGTKRRKTDKGAAAPAVSELTPMA--DFRAHAQAVTGLAGPGGVGGPQAAAVVVPSSTLYSASLDRAVKTWDAERQDCLHTLNAPKAVTCLGCS-ESGRMLATGHPDARVRIWDTRTQGETITRASLSSHKQWVTDVKWAPGSETMVLSCGHDGAVKLWDIRSTLPLHSAQAHQGKALCCGW-QEGKIVSGGEDGAVKTYVV 806
            +LRGH  +I +  A+ SG+E        +G W   + VW V+       D +D GS    AP   KR++ +   AAPA  +    A      H+Q V+             A     + T++SAS D +V+TWD +      T+   K +  L    E G +LATG  D  +RIWD+R    T +   L SHK W+T VKW       +LS  HDG VK+WD+RS +PLH+ QAH  KALC  W QE  IVSGG D  ++ + +
Sbjct:  191 VLRGHSAAIQSVVASPSGNEVA------SGSWDTTIKVWSVS------RDAEDGGS----AP---KRQRVEDSGAAPAGEQEAREARVTLEGHSQCVS-------------AVDWSRADTIHSASWDHSVRTWDVQAAVNTSTITGSKVILALSVGGEGGALLATGGADPAIRIWDSRDSSSTGSAIQLLSHKGWITAVKWHKTRTHQLLSTSHDGTVKMWDVRSKVPLHTVQAHTVKALCVDWFQEATIVSGGADNQLRFHAL 422          
BLAST of mRNA_E_fasciculatus_S2_contig7583.15744.1 vs.
Match: Hypothetical (protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GL41_9STRA)

HSP 1 Score: 142 bits (357), Expect = 1.080e-32
Identity = 96/273 (35.16%), Postives = 143/273 (52.38%), Query Frame = 3
Query:   36 GHDNSISAAHAAGSGSESGGAPRAYTGDWSGHVCVWDVACLEGGHADGDDNGSGVGSAPQGTKRRKTDKGAAAPAVSELTPMADFRAHAQAVTGLAGPGGVGGPQAAAVVVPSSTLYSASLDRAVKTWDAERQDCLHTLNAPKAVTCLGCSESGRMLATGHPDARVRIWDTRTQ----GETITRASLS------SHKQWVTDVKWAPGSETMVLSCGHDGAVKLWDIRSTLPLHSAQAHQG--KALCCGWQEGKIVSGGEDGAVKTYVVPERN 818
            GH NSI +  A G+ S+        +GDW G +C+W+V         GD   + V +AP  TK+ KT   + A AV E+ P A ++AHA +++ L           +     SS L S+S D ++K WD ERQDC+ TLN  + V+ +    +  ++ATGHPD  +R+WD RTQ    GE      +S      SHK W++ ++W+P    ++ +  HDG +KLWDIRS++PLHS +AH+   K LC  +      + G +G        E N
Sbjct:  241 GHSNSIESV-ALGASSDK---TFLASGDWMGGLCLWEVPR-------GD---AAVETAP--TKKAKTATNSTATAVREVQPKASWKAHASSISHLCY------THDSVSSSTSSKLISSSWDHSLKVWDVERQDCILTLNGNRVVSAMDRCSNSDVVATGHPDCTMRLWDMRTQSGGGGEKEGSTGVSEKTFRPSHKSWISALQWSPTDPFILATNSHDGILKLWDIRSSVPLHSTRAHEKGEKGLCLAFD-----ASGSNGXXXXXXXXETN 486          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7583.15744.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Ribosome2.110e-16488.13biogenesis protein WDR12 homolog n=1 Tax=Ectocarpu... [more]
Uncharacterized1.660e-13192.72protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Ribosome9.820e-4941.61biogenesis protein WDR12 homolog n=1 Tax=Tribonema... [more]
Ribosome6.080e-3634.75biogenesis protein WDR12 homolog n=1 Tax=Chaetocer... [more]
Ribosome1.500e-3431.85biogenesis protein WDR12 homolog n=1 Tax=Hondaea f... [more]
Hypothetical1.800e-3436.47protein n=2 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Ribosome3.520e-3433.94biogenesis protein YTM1 n=2 Tax=Fistulifera solari... [more]
Ribosome1.610e-3333.99biogenesis protein WDR12 homolog n=1 Tax=Coccolith... [more]
Ribosome2.370e-3335.98biogenesis protein WDR12 homolog n=1 Tax=Klebsormi... [more]
Hypothetical1.080e-3235.16protein n=1 Tax=Proboscia inermis TaxID=420281 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7583contigE_fasciculatus_S2_contig7583:3595..7193 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score360.5
Seed ortholog evalue4.5e-97
Seed eggNOG ortholog2880.D8LI35
Preferred nameYTM1
Model size1778
KEGG koko:K11578,ko:K14863
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000460,GO:0000470,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005911,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0007154,GO:0008150,GO:0008152,GO:0009267,GO:0009506,GO:0009605,GO:0009607,GO:0009987,GO:0009991,GO:0010035,GO:0010038,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0022613,GO:0030054,GO:0030447,GO:0030684,GO:0030686,GO:0030687,GO:0031461,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034470,GO:0034641,GO:0034660,GO:0036170,GO:0036180,GO:0040007,GO:0042221,GO:0042254,GO:0042273,GO:0042594,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044182,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0046689,GO:0050896,GO:0051276,GO:0051716,GO:0055044,GO:0070013,GO:0070545,GO:0071496,GO:0071704,GO:0071840,GO:0080008,GO:0090304,GO:1901360,GO:1902494,GO:1990234,GO:1990904
Exons6
EggNOG free text desc.ribosomal large subunit biogenesis
EggNOG OGsKOG0313@1,KOG0313@2759
Cds size549
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03036,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7583.15744.1prot_E_fasciculatus_S2_contig7583.15744.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7583 4588..6618 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842419.3690963-UTR-E_fasciculatus_S2_contig7583:3594..39991696842419.3690963-UTR-E_fasciculatus_S2_contig7583:3594..3999Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7583 3595..3999 -
1696842419.3812804-UTR-E_fasciculatus_S2_contig7583:4023..45221696842419.3812804-UTR-E_fasciculatus_S2_contig7583:4023..4522Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7583 4024..4522 -
1696842419.3920357-UTR-E_fasciculatus_S2_contig7583:4540..45871696842419.3920357-UTR-E_fasciculatus_S2_contig7583:4540..4587Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7583 4541..4587 -
1696842419.443605-UTR-E_fasciculatus_S2_contig7583:6618..66811696842419.443605-UTR-E_fasciculatus_S2_contig7583:6618..6681Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7583 6619..6681 -
1696842419.4579694-UTR-E_fasciculatus_S2_contig7583:6978..71931696842419.4579694-UTR-E_fasciculatus_S2_contig7583:6978..7193Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7583 6979..7193 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842419.4028034-CDS-E_fasciculatus_S2_contig7583:4587..47731696842419.4028034-CDS-E_fasciculatus_S2_contig7583:4587..4773Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7583 4588..4773 -
1696842419.4164312-CDS-E_fasciculatus_S2_contig7583:5369..55111696842419.4164312-CDS-E_fasciculatus_S2_contig7583:5369..5511Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7583 5370..5511 -
1696842419.432968-CDS-E_fasciculatus_S2_contig7583:6397..66181696842419.432968-CDS-E_fasciculatus_S2_contig7583:6397..6618Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7583 6398..6618 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7583.15744.1

>prot_E_fasciculatus_S2_contig7583.15744.1 ID=prot_E_fasciculatus_S2_contig7583.15744.1|Name=mRNA_E_fasciculatus_S2_contig7583.15744.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=183bp
MADFRAHAQAVTGLAGPGGVGGPQAAAVVVPSSTLYSASLDRAVKTWDAE
RQDCLHTLNAPKAVTCLGCSESGRMLATGHPDARVRIWDTRTQGETITRA
SLSSHKQWVTDVKWAPGSETMVLSCGHDGAVKLWDIRSTLPLHSAQAHQG
KALCCGWQEGKIVSGGEDGAVKTYVVPERNHD*
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mRNA from alignment at E_fasciculatus_S2_contig7583:3595..7193-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7583.15744.1 ID=mRNA_E_fasciculatus_S2_contig7583.15744.1|Name=mRNA_E_fasciculatus_S2_contig7583.15744.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3599bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7583:3595..7193- (Ectocarpus fasciculatus EfasUO2)
GTAATGCCTCCTTGGAGGCTGCTGCGATTCTCCGGGGGCACGACAACAGC ATCTCCGCCGCGCACGCCGCCGGCTCAGGCAGCGAGAGCGGCGGAGCCCC GAGGGCGTACACCGGCGATTGGAGCGGCCACGTGTGCGTGTGGGACGTGG CCTGTCTTGAGGGAGGCCACGCGGACGGGGATGACAACGGCAGCGGTGTA GGGTCCGCCCCCCAGGTACGCGCCTGGAGTTATCGTTTTGCGCGCGCGCG TTCCGGATGGTGTGCGCTCCTTGCCTTCTTTGCAGTGTCCGTGATGCGGG CCGCGTGAATAGGGTTTTAGGCATACTCCGAGTGATAGGGACGACGTTTG GTTGGCCCTCCGTATTATGTCGACCAAGGGCGCAACCTTCGCGGAGACGG CAACATTCGCCTAGCCAGAAAACCGCCCTTGGCTCGGGTGGGACGCGCAT GTCTCCTTCCAGGTTTTTCTTTCAAATTTTTAATGGAAACGGTTTCGGAT TGATGCGGACAGGGGACGAAGCGTCGAAAGACGGACAAGGGTGCAGCGGC GCCGGCGGTTTCCGAGCTGACGCCTATGGCGGACTTTCGCGCCCACGCTC AGGCGGTCACGGGGCTGGCGGGTCCGGGCGGGGTAGGGGGGCCGCAGGCA GCAGCAGTGGTGGTGCCTAGCAGCACTTTGTACAGCGCGTCGTTGGACCG TGCGGTAAAGACGTGGGACGCGGAGAGGCAGGACTGCTTGCACACTCTGA ACGCACCCAAGGCGGTCACGTGCCTTGGCTGTTCGGAGAGCGGGAGGTAT GGAGCGAAGCTTTCGGGCTGTTGCAGCCGGTTGTTGTCTGTTGTCGTTTG TTGTTGATGTTAGTGGTGGTGGTGGTGATTGTGCTGATGGCTTAACATCA AACACCGTTCAGCACTCTACTCAAGTGACTTTTTTTGCCTCGTACTGGTC CCACAGGGGTATGGTTATGGCATGCATACAAACTTTATTGAAGAGTCAAA AGAGAAAATTGAAATGACCCATATGTAAACATCAACACGAACGCAACAAT ACCGTGAGGATGATGCAGGTCTGGGGTGTTGGCGTTTTTGAGAGCTTCCT TGCTCGACGACTAGAAGGCACCACTGCCGAAAAGGGTGGTTTTGGAATTT GTTTCTGGTCGGGATGTTTCCTTAAGCGTGTCGTTTGGCTTTCGCACCGT CCAAGTTGTGGAGCAAAAAAGCTTTGAAAAACGTCGTGACCTCTGTGCAG AGACCCGCATCCTTGTGGTATGTGGATTCCAGAGACAAGGCCCCAGGCAG CCAGACGCCGCAGACGAGTTGTTGGACGACAAAGCCTGGTAGACTGACAG AGCCCATCGCTCCCGCTCTACACGCTAGCGTTGGTCAAAAATACCACTTG AAGAGCAACCAATTTTTTGCTTGTGAACACAACGCACCGGTCAAACCAAG CCCTGGTTTGTATCTCCTCCGTCCCTCCCTTCTCTCACTGCCCTGTCCTT TGCTAGGGTTCCCTGCTACACGTTGCCCTTTAGCCACGCCATTTATTACC CTTCGCACGTCATCGCGCTGGCCGGCTACATAACAGCCGCCATCTTGCTG TTCGGATTCCTCTAGAAAGCTCATCAACTCACCCTCTCTCTGGCCACGTC CGCACCCCTATGTCTGTACTGCTGCGTGTCAGGATGCTGGCCACCGGCCA TCCGGATGCACGAGTGCGCATCTGGGACACTCGCACGCAGGGAGAGACAA TCACCAGGGCTTCCCTGAGCTCCCACAAGCAGTGGGTCACGGACGTGAAA TGGGCTCCGGGGTCGGAAACCATGGTGCGTACGAGTCGTTAGTGGAGGAA ATTACACCGCCCCTTTTTGCACACCTCGCAAAGCGCCGAGACGAGATAGG CGGGTCTCTCTTGCGTCTGTACAGGAGGCTGCTTCTGTTTTGGGGACGGG AACGGTGTTCCGTGTTGAACACTAATATAATAGAACACGATTTATTGTCA ATGGTTGAATTACTCAAGGCAAGCAATAAGTGTGTACGCTTACCCTCCCC CCCTGCCCCGTCGCAACGGGTACGAAGTATGTCTGTCGACCTCGTTTTCC GCTTGCAACTACACACCTAGAACCACTCCTCGTCTGCAGCTACTTTCGGC CTAAATAACACGCTGCAAGGGACATGGCGTCCGTAGTCTGGACGCGAGTG ACTGTACGTGTACTGGTAGGGGAGGGGAAAAATGTGTGTGTTTGGTTGTT GGCATCGACCTCGGTACTCGGCTGACCACTGAAAATACTTCAGTCTCAGT GGGGTTCCGGAAAATACAAAATCAAATGTGTGTGTTGCATGTAGGAGGGC GTGCAATCGACGGGGCCCTTGTCGCTTCCGCGTCCAACCGTTTCATCTTG CTCCCTCGTTCGTACCGTAGGTGTTGAGCTGCGGCCACGACGGCGCGGTC AAGCTCTGGGACATCCGCTCCACGCTGCCGCTGCACAGCGCCCAGGCGCA CCAGGGGAAGGCTCTTTGCTGCGGGTGGCAGGAGGGGAAGATCGTCAGCG GGGGAGAAGACGGAGCGGTTAAGACTTACGTCGTGCCGGAGAGGAATCAC GACTGACTGATTTTGGTGTTGGCGTGACCAGCGGTTGCTCTCCCGTGCTA TTTGTACCCCCCCCCCCCCAGTACGCCCCCCCCCCCGGTTTCGAAGTGTC CCCGGTTTTCACAGCAGTGTTTTTTTGTTTTGCCGTGAGAGTGTTGACAG GCTTGAACTGAGCACTGGTGCTGCTATACAACGCGAGCTGCTCTGAACTT GTCTTGCGGTTGGGGGAGATTTTTAGTCCCCGTGCTTGCGTGGTAGGATA GTCGTGTGTGATTTGTTAGCAAAAGTTTGCTGAAGTCTGTGTTTTCCGTA TCCCCACTCTCCCGCGTAGTTGCTCTCCCTGATTGGTGGCGTTTTTTTTA GCTGAAAGAACGGGCGATGAAGCGTTCTTGCTGTCCAGATTGGCGAGATC AACCGTGACATAGCCATGCATACATCCTCGTGTTGCCGATGTGATGATGA TTCTTAGAAGACAACGCTTGACTTGAGTTGTGCTTTAGACAGAAAGGACG GGCCGGCCGATTTCGGGTCGAGGTTCATAGATAGGAGGAGCGCGCGGGGG GGTGCTACGTGCCCCGCTCGGGGGGGTGCTACGTGCCCCGCTCGTCACAT GCCAAACAGCTCTCGGTTACAGCACACGTGCCTAGCGCACTTTTGAACAA CAACGGTCGGGTTCGACCGTGAGCTTCGACCGTGAGCAAAGGAACGATTT TTTCCCGTCTCTCACTGCGTGTTGTTGAGTTCTTCAGCACAATATTTTTT GGGGGGTTATGATGCCCGGTGTTACGCACAGCACTACTTTCAATACGACT CAAAGCGAGCATTTTTCGAGTCTGTCACAATCTGTGTTACGGGTGCTATT CCAAGTCCATGGTATTTTGCGTTTCGGAGAACAAACTGACCGTATGTAGA GCAGTGCATGCATGCACGCACTCAAGAACCCTGACCCGTCGTACTGGTCT TTGCCGGTAGTAGGTGTCCCGATATAGCGCCGGTATGTGCCCAGAGGTC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7583:3595..7193-

>mRNA_E_fasciculatus_S2_contig7583.15744.1 ID=mRNA_E_fasciculatus_S2_contig7583.15744.1|Name=mRNA_E_fasciculatus_S2_contig7583.15744.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=549bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7583:3595..7193- (Ectocarpus fasciculatus EfasUO2)
ATGGCGGACTTTCGCGCCCACGCTCAGGCGGTCACGGGGCTGGCGGGTCC
GGGCGGGGTAGGGGGGCCGCAGGCAGCAGCAGTGGTGGTGCCTAGCAGCA
CTTTGTACAGCGCGTCGTTGGACCGTGCGGTAAAGACGTGGGACGCGGAG
AGGCAGGACTGCTTGCACACTCTGAACGCACCCAAGGCGGTCACGTGCCT
TGGCTGTTCGGAGAGCGGGAGGATGCTGGCCACCGGCCATCCGGATGCAC
GAGTGCGCATCTGGGACACTCGCACGCAGGGAGAGACAATCACCAGGGCT
TCCCTGAGCTCCCACAAGCAGTGGGTCACGGACGTGAAATGGGCTCCGGG
GTCGGAAACCATGGTGTTGAGCTGCGGCCACGACGGCGCGGTCAAGCTCT
GGGACATCCGCTCCACGCTGCCGCTGCACAGCGCCCAGGCGCACCAGGGG
AAGGCTCTTTGCTGCGGGTGGCAGGAGGGGAAGATCGTCAGCGGGGGAGA
AGACGGAGCGGTTAAGACTTACGTCGTGCCGGAGAGGAATCACGACTGA
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