mRNA_E_fasciculatus_S2_contig758.15742.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig758.15742.1
Unique NamemRNA_E_fasciculatus_S2_contig758.15742.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig758.15742.1 vs.
Match: EsV-1-209 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM79_ECTSI)

HSP 1 Score: 568 bits (1463), Expect = 4.610e-198
Identity = 341/415 (82.17%), Postives = 354/415 (85.30%), Query Frame = 1 
Query:  217 MDRFKATKTPNLTELGNTTSTTKNPHYKGRRPTVLYVRAEIEALRVRERRISAEKIAKDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXIEILKTDHDIDPDLVTNEDLKNAIFGDVLDSDTPFTSLQDVRQAYRFKDQAAKTVPADPVRALNFFLQNVDFFTSQXXXXXXXXXXXXXQRVLQSVVDTLSSPSGSDEALENDDQAMFDTFWRTNDIIQGVIGREGPSVVIVSFLNPGDVKRLEQSNMKRLVYNARFISEKCQARRRIGHVIQRVVGQEGLSAAIVSLLCPADVRRLQQSSMRQIASNAKFVSERSDARRRLCCEIEQLGGIPDVDAFLEDPAVLERVTRYETHCACMDVGRVARKLHEFYRLRGDPAARREMLSEAMEAEGMRIRGDSTFCREFINGSTDVDLGEI 1461
            MDRFKATKTP+LTEL NTTSTT NPHYKG RPTVLYVRAEIEALRVRERRISAEKIA+  XXXXXXXXXXXXXXXXXXXXXXXXXXXX  +LK DHDIDP++VTNEDLKNAIFGD LDSDTPFTSLQD RQAYRFKDQAAKTVPADPVRALNF LQNV+F TSQ             QR LQSVVD LSSP G++E L NDDQAMFDTFWRTNDIIQGVIGREG SV IVSFLNP DVKRLEQSNMKRLVYNARFISEKCQARRRIG VIQRVVGQEGLSAAIVS LCPADVRRLQ+SSMRQ+ASNAKFVS+RSDARRRLCCEIEQLGGIPDV AFLEDPAVLERVTR                      LRGDPAARREMLS+AMEAEGM IRGDS FCREFINGSTDVDLG +
Sbjct:    1 MDRFKATKTPDLTELDNTTSTTTNPHYKGSRPTVLYVRAEIEALRVRERRISAEKIARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMLKADHDIDPEMVTNEDLKNAIFGDYLDSDTPFTSLQDARQAYRFKDQAAKTVPADPVRALNF-LQNVEFLTSQTTRAVPGDSVSVIQRALQSVVDALSSP-GNNEVLGNDDQAMFDTFWRTNDIIQGVIGREGLSVAIVSFLNPEDVKRLEQSNMKRLVYNARFISEKCQARRRIGRVIQRVVGQEGLSAAIVSFLCPADVRRLQKSSMRQLASNAKFVSKRSDARRRLCCEIEQLGGIPDVGAFLEDPAVLERVTR----------------------LRGDPAARREMLSKAMEAEGMSIRGDSAFCREFINGSTDVDLGSL 391
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig758.15742.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
EsV-1-2094.610e-19882.17n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig758contigE_fasciculatus_S2_contig758:21631..23292 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1662
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionSecreted protein
Ec32 orthologEc-16_004750.1
Cds size1653
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842419.190954-UTR-E_fasciculatus_S2_contig758:21630..216391696842419.190954-UTR-E_fasciculatus_S2_contig758:21630..21639Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig758 21631..21639 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842419.2114866-CDS-E_fasciculatus_S2_contig758:21639..232921696842419.2114866-CDS-E_fasciculatus_S2_contig758:21639..23292Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig758 21640..23292 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig758.15742.1prot_E_fasciculatus_S2_contig758.15742.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig758 21640..23292 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig758.15742.1

>prot_E_fasciculatus_S2_contig758.15742.1 ID=prot_E_fasciculatus_S2_contig758.15742.1|Name=mRNA_E_fasciculatus_S2_contig758.15742.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=551bp
MASSIEKVCELCRINRVEGTLCGIVLAVSCLKCATDPRFSSRASVRNFSV
GGKGDGGGNVAFLTFPARGMDRFKATKTPNLTELGNTTSTTKNPHYKGRR
PTVLYVRAEIEALRVRERRISAEKIAKDRKEKTERLANDRREKAEKLEKE
RREKGARIEILKTDHDIDPDLVTNEDLKNAIFGDVLDSDTPFTSLQDVRQ
AYRFKDQAAKTVPADPVRALNFFLQNVDFFTSQTTRTVPGDSVSEIQRVL
QSVVDTLSSPSGSDEALENDDQAMFDTFWRTNDIIQGVIGREGPSVVIVS
FLNPGDVKRLEQSNMKRLVYNARFISEKCQARRRIGHVIQRVVGQEGLSA
AIVSLLCPADVRRLQQSSMRQIASNAKFVSERSDARRRLCCEIEQLGGIP
DVDAFLEDPAVLERVTRYETHCACMDVGRVARKLHEFYRLRGDPAARREM
LSEAMEAEGMRIRGDSTFCREFINGSTDVDLGEIVGRMKLAKHLFDLGGH
VTWSKNREAANAKFKELFHMEGLSMKESFKKSIEGCRPERVPLYEYDQYE
*
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mRNA from alignment at E_fasciculatus_S2_contig758:21631..23292+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig758.15742.1 ID=mRNA_E_fasciculatus_S2_contig758.15742.1|Name=mRNA_E_fasciculatus_S2_contig758.15742.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1662bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig758:21631..23292+ (Ectocarpus fasciculatus EfasUO2)
ACTCAAGCAATGGCTTCCTCCATCGAAAAGGTTTGCGAGCTCTGCCGCAT
CAACCGCGTTGAAGGAACACTGTGCGGAATCGTGCTGGCCGTGTCATGCC
TGAAATGTGCTACCGATCCGAGGTTCTCCAGTAGGGCATCGGTAAGGAAC
TTCTCGGTTGGTGGTAAGGGCGATGGTGGAGGCAACGTGGCGTTCTTGAC
GTTCCCAGCTAGGGGGATGGACAGGTTCAAGGCAACCAAGACCCCGAACT
TGACAGAACTCGGCAACACTACGTCAACGACTAAAAACCCACACTACAAG
GGCAGGAGGCCGACGGTGTTGTACGTTAGGGCCGAGATTGAGGCTCTCCG
CGTCAGGGAACGGCGAATCTCTGCCGAGAAGATTGCCAAAGATCGCAAGG
AGAAGACCGAGAGGTTGGCCAACGATCGTAGGGAGAAGGCCGAAAAGCTG
GAGAAAGAACGCAGGGAGAAGGGTGCCAGGATCGAGATCCTCAAGACCGA
TCACGACATCGACCCCGACTTGGTTACCAATGAAGACTTGAAGAACGCCA
TTTTCGGCGACGTCTTGGACTCCGACACGCCGTTTACGTCGCTTCAAGAC
GTCAGGCAAGCGTATCGGTTCAAAGACCAGGCAGCAAAGACTGTTCCTGC
CGATCCTGTGAGAGCCCTCAACTTCTTCTTGCAAAACGTTGACTTTTTCA
CGTCGCAGACTACGAGGACCGTGCCCGGCGACTCTGTTTCGGAAATTCAA
CGAGTCTTACAAAGCGTGGTGGATACGCTTTCCAGCCCATCCGGTAGCGA
CGAGGCGTTGGAAAACGATGACCAGGCCATGTTCGACACGTTCTGGCGCA
CGAACGACATCATTCAAGGCGTGATCGGCCGCGAGGGACCGTCGGTAGTG
ATCGTTTCATTCCTGAACCCCGGGGACGTGAAGAGACTCGAGCAAAGCAA
CATGAAAAGGCTCGTCTACAACGCAAGATTCATCTCGGAGAAGTGCCAGG
CTCGCAGGCGTATCGGCCACGTCATCCAGCGCGTGGTCGGCCAAGAGGGC
TTATCGGCGGCGATCGTGTCGCTCCTGTGCCCGGCGGACGTGCGACGGCT
CCAGCAAAGCAGCATGAGACAGATCGCCTCCAACGCCAAGTTTGTTTCGG
AGAGATCGGACGCGCGCCGTAGGCTTTGCTGCGAAATCGAGCAGCTGGGG
GGGATACCGGACGTGGACGCTTTCCTGGAGGACCCTGCTGTCTTGGAGCG
AGTTACGAGGTATGAGACGCATTGTGCGTGCATGGACGTCGGGCGCGTGG
CACGAAAGCTGCACGAGTTCTACAGGCTGCGGGGCGACCCTGCGGCGAGA
CGAGAAATGTTGTCGGAGGCGATGGAGGCCGAAGGGATGCGCATCCGCGG
GGACAGCACGTTCTGTCGCGAGTTCATCAACGGATCAACGGACGTCGATC
TCGGTGAGATCGTGGGGAGGATGAAGCTAGCGAAGCACCTCTTCGACTTG
GGAGGCCATGTGACGTGGTCGAAGAATCGAGAGGCTGCGAACGCAAAGTT
CAAGGAACTCTTCCACATGGAGGGGCTGAGCATGAAGGAATCCTTCAAGA
AGTCGATAGAGGGGTGCCGTCCGGAGAGGGTACCCCTGTACGAGTATGAC
CAGTATGAGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig758:21631..23292+

>mRNA_E_fasciculatus_S2_contig758.15742.1 ID=mRNA_E_fasciculatus_S2_contig758.15742.1|Name=mRNA_E_fasciculatus_S2_contig758.15742.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1653bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig758:21631..23292+ (Ectocarpus fasciculatus EfasUO2)
ATGGCTTCCTCCATCGAAAAGGTTTGCGAGCTCTGCCGCATCAACCGCGT
TGAAGGAACACTGTGCGGAATCGTGCTGGCCGTGTCATGCCTGAAATGTG
CTACCGATCCGAGGTTCTCCAGTAGGGCATCGGTAAGGAACTTCTCGGTT
GGTGGTAAGGGCGATGGTGGAGGCAACGTGGCGTTCTTGACGTTCCCAGC
TAGGGGGATGGACAGGTTCAAGGCAACCAAGACCCCGAACTTGACAGAAC
TCGGCAACACTACGTCAACGACTAAAAACCCACACTACAAGGGCAGGAGG
CCGACGGTGTTGTACGTTAGGGCCGAGATTGAGGCTCTCCGCGTCAGGGA
ACGGCGAATCTCTGCCGAGAAGATTGCCAAAGATCGCAAGGAGAAGACCG
AGAGGTTGGCCAACGATCGTAGGGAGAAGGCCGAAAAGCTGGAGAAAGAA
CGCAGGGAGAAGGGTGCCAGGATCGAGATCCTCAAGACCGATCACGACAT
CGACCCCGACTTGGTTACCAATGAAGACTTGAAGAACGCCATTTTCGGCG
ACGTCTTGGACTCCGACACGCCGTTTACGTCGCTTCAAGACGTCAGGCAA
GCGTATCGGTTCAAAGACCAGGCAGCAAAGACTGTTCCTGCCGATCCTGT
GAGAGCCCTCAACTTCTTCTTGCAAAACGTTGACTTTTTCACGTCGCAGA
CTACGAGGACCGTGCCCGGCGACTCTGTTTCGGAAATTCAACGAGTCTTA
CAAAGCGTGGTGGATACGCTTTCCAGCCCATCCGGTAGCGACGAGGCGTT
GGAAAACGATGACCAGGCCATGTTCGACACGTTCTGGCGCACGAACGACA
TCATTCAAGGCGTGATCGGCCGCGAGGGACCGTCGGTAGTGATCGTTTCA
TTCCTGAACCCCGGGGACGTGAAGAGACTCGAGCAAAGCAACATGAAAAG
GCTCGTCTACAACGCAAGATTCATCTCGGAGAAGTGCCAGGCTCGCAGGC
GTATCGGCCACGTCATCCAGCGCGTGGTCGGCCAAGAGGGCTTATCGGCG
GCGATCGTGTCGCTCCTGTGCCCGGCGGACGTGCGACGGCTCCAGCAAAG
CAGCATGAGACAGATCGCCTCCAACGCCAAGTTTGTTTCGGAGAGATCGG
ACGCGCGCCGTAGGCTTTGCTGCGAAATCGAGCAGCTGGGGGGGATACCG
GACGTGGACGCTTTCCTGGAGGACCCTGCTGTCTTGGAGCGAGTTACGAG
GTATGAGACGCATTGTGCGTGCATGGACGTCGGGCGCGTGGCACGAAAGC
TGCACGAGTTCTACAGGCTGCGGGGCGACCCTGCGGCGAGACGAGAAATG
TTGTCGGAGGCGATGGAGGCCGAAGGGATGCGCATCCGCGGGGACAGCAC
GTTCTGTCGCGAGTTCATCAACGGATCAACGGACGTCGATCTCGGTGAGA
TCGTGGGGAGGATGAAGCTAGCGAAGCACCTCTTCGACTTGGGAGGCCAT
GTGACGTGGTCGAAGAATCGAGAGGCTGCGAACGCAAAGTTCAAGGAACT
CTTCCACATGGAGGGGCTGAGCATGAAGGAATCCTTCAAGAAGTCGATAG
AGGGGTGCCGTCCGGAGAGGGTACCCCTGTACGAGTATGACCAGTATGAG
TGA
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