mRNA_E_fasciculatus_S2_contig7573.15736.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7573.15736.1
Unique NamemRNA_E_fasciculatus_S2_contig7573.15736.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7573.15736.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE8_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 3.230e-41
Identity = 73/83 (87.95%), Postives = 78/83 (93.98%), Query Frame = 2 
Query:    2 AIELVVPALIMLLIGVIKGSLNPEELDAGVPATDTPVVTYEALQNTTLSPNVLCYDNNVFHRCGCHRSTDDYEVPEGYISGAG 250
            AIEL+VPALIMLLIGVIK S++P+EL AG PATDTPVVTYEALQNTTLSPNVLCYDNNVFHRCGCHRSTDDYE PE Y+SGAG
Sbjct:   29 AIELIVPALIMLLIGVIKNSISPKELPAGTPATDTPVVTYEALQNTTLSPNVLCYDNNVFHRCGCHRSTDDYEPPESYLSGAG 111
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BLAST of mRNA_E_fasciculatus_S2_contig7573.15736.1 vs.
Match: ABC (transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFQ4_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 3.830e-40
Identity = 70/82 (85.37%), Postives = 77/82 (93.90%), Query Frame = 2 
Query:    2 AIELVVPALIMLLIGVIKGSLNPEELDAGVPATDTPVVTYEALQNTTLSPNVLCYDNNVFHRCGCHRSTDDYEVPEGYISGA 247
            AIEL+VPAL+MLLIGVIK S++P+EL AG PATDTPVVTYEALQNTT+SPNVLCYDNNVFHRCGCHRSTDDYE PE Y+SGA
Sbjct:   19 AIELIVPALVMLLIGVIKNSISPKELPAGTPATDTPVVTYEALQNTTVSPNVLCYDNNVFHRCGCHRSTDDYEPPESYVSGA 100
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7573.15736.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE9_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 3.310e-19
Identity = 42/83 (50.60%), Postives = 57/83 (68.67%), Query Frame = 2 
Query:    2 AIELVVPALIMLLIGVIKGSLNPEELDAGVPATDTPVVTYEALQNTTLSPNVLCYDNNVFHRCGCHRSTDDYEVPEGYISGAG 250
            A+EL+ PA+IMLL+G IK ++  +  +  VP +DTPV TY A+QN +  PNVLC+DNN+F RC CH   D Y  P  Y++G G
Sbjct:   45 ALELLCPAMIMLLVGSIKNTIVSQVTEETVPTSDTPVATYGAMQNISTFPNVLCFDNNMFMRCDCHLDEDAYSAPGIYLTGLG 127
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7573.15736.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized3.230e-4187.95protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
ABC3.830e-4085.37transporter domain-containing protein n=1 Tax=Ecto... [more]
Uncharacterized3.310e-1950.60protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7573contigE_fasciculatus_S2_contig7573:1183..2389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score141.4
Seed ortholog evalue1.7e-31
Seed eggNOG ortholog2880.D7FZE8
Model size250
KEGG koko:K05643,ko:K05645
KEGG TC3.A.1.211
KEGG Pathwayko02010,map02010
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006810,GO:0006869,GO:0008150,GO:0009653,GO:0010876,GO:0015399,GO:0015405,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0030587,GO:0031288,GO:0032502,GO:0033036,GO:0042623,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044424,GO:0044464,GO:0048856,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0055085,GO:0071702,GO:0090702,GO:0099120
Exons2
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1131@1,KOG0059@2759
Cds size219
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842418.7113273-CDS-E_fasciculatus_S2_contig7573:1182..12461696842418.7113273-CDS-E_fasciculatus_S2_contig7573:1182..1246Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7573 1183..1246 -
1696842418.7277677-CDS-E_fasciculatus_S2_contig7573:2203..23581696842418.7277677-CDS-E_fasciculatus_S2_contig7573:2203..2358Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7573 2204..2358 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842418.7417781-UTR-E_fasciculatus_S2_contig7573:2358..23891696842418.7417781-UTR-E_fasciculatus_S2_contig7573:2358..2389Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7573 2359..2389 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7573.15736.1prot_E_fasciculatus_S2_contig7573.15736.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7573 1183..2358 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7573.15736.1

>prot_E_fasciculatus_S2_contig7573.15736.1 ID=prot_E_fasciculatus_S2_contig7573.15736.1|Name=mRNA_E_fasciculatus_S2_contig7573.15736.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=73bp
MLLIGVIKGSLNPEELDAGVPATDTPVVTYEALQNTTLSPNVLCYDNNVF
HRCGCHRSTDDYEVPEGYISGAG
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mRNA from alignment at E_fasciculatus_S2_contig7573:1183..2389-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7573.15736.1 ID=mRNA_E_fasciculatus_S2_contig7573.15736.1|Name=mRNA_E_fasciculatus_S2_contig7573.15736.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1207bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7573:1183..2389- (Ectocarpus fasciculatus EfasUO2)
GGCAATCGAGCTCGTCGTGCCGGCGCTAATCATGCTGCTCATCGGCGTCA
TCAAGGGCAGCCTTAACCCCGAGGAGCTCGACGCGGGCGTGCCTGCGACC
GACACACCCGTAGTCACCTACGAGGCCCTGCAGAACACCACCCTCTCCCC
CAACGTCCTCTGCTACGACAACAACGTGTTCCACAGGCAAGCTTCTTGAT
AGTTTATAGTCTAGTTTATACTGCCATATTGTAGCCGTGCTGGCGGTCCC
AACACAAAACATGTTCGACGGGATGTGCCCTTCGTTCGAGGAACGCTCTC
GGTTAGGGTCTGCGTGCCCCCTACCCGGTCTATTTTTGTAATCATGCTTA
CATGCTTGTTTGCGTATGGAATCCCAGTGCCCCGGCGGTTGTTTCTTAAT
GTTGCGGTGTTGCACTACCATCATGTACAACCCCGAACCGCGTTGGGTTA
GTTGAACCGGGTTACGCCGGGTTGCCGGGTTGGGTTTGTTGAACCAGCTA
CGCCGGGTTGCCGGGTTGGACCCGTTGTTGAGAGTCGCGCCTCCTTTTGC
AAGGCGATGTATGCAGAACAAAAGTCTCATCGCCATCTGCACCGGCGCTG
CCTGCAGCGACACACCCACGAGCTCGTGACGCGGTGGTAGGGGCCAGGGG
GGTTGTCTTTGCTCGCCGGGCATCTACAAGTACCTCAACAGTGTTGAGTG
TTTTCTCTTGCCAGCTTATGTTCGAAGGTGATGGCGAGACAACTAAAATA
TGTTGTAACGGGACTGCTGTTTGCGACCTGGCTGGCTGTTAAATCATAGG
CACAAATATTGCGTGAGACGTACTCGTGTTCATGTACGCCAATGTACGGT
ACACAGCAACAAACCGACAGCCAAAGGCGGTTACTTGTACCGCTTCATGC
CAGTATACCCGCGTACCATACGATACAACCGCAGCGAGCCACCCCCGCGA
CTATCGTGGTGGAGGTCTTTCATTCTATGCATAGCGGTTTGGGTTTTTGT
GAGGAGAGACCACGACGTTTGCGTGTTCGCTGCTCTTATGGCCGACGGGG
AAACGAAGGCGCCGACAGCATTTGCAAATAACAGCAACGAATGCTCACGA
AGGCCCTCCTTGTACTATTTATGTTCCCAATCCCATTGAACAGGTGCGGG
TGCCACAGGAGCACCGATGACTACGAAGTCCCAGAAGGATACATCTCGGG
TGCCGGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7573:1183..2389-

>mRNA_E_fasciculatus_S2_contig7573.15736.1 ID=mRNA_E_fasciculatus_S2_contig7573.15736.1|Name=mRNA_E_fasciculatus_S2_contig7573.15736.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=219bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7573:1183..2389- (Ectocarpus fasciculatus EfasUO2)
ATGCTGCTCATCGGCGTCATCAAGGGCAGCCTTAACCCCGAGGAGCTCGA
CGCGGGCGTGCCTGCGACCGACACACCCGTAGTCACCTACGAGGCCCTGC
AGAACACCACCCTCTCCCCCAACGTCCTCTGCTACGACAACAACGTGTTC
CACAGGTGCGGGTGCCACAGGAGCACCGATGACTACGAAGTCCCAGAAGG
ATACATCTCGGGTGCCGGC
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