mRNA_E_fasciculatus_S2_contig7563.15725.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7563.15725.1
Unique NamemRNA_E_fasciculatus_S2_contig7563.15725.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7563.15725.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R7_9PHAE)

HSP 1 Score: 609 bits (1570), Expect = 3.810e-218
Identity = 322/368 (87.50%), Postives = 330/368 (89.67%), Query Frame = 1 
Query:    1 MRLLFWSPCLAVCYLLPAHGFVRQRFSMRIGHEEHRTGYGRRGASTAISSRPT-IIARTASSTTAVDSSSSAVEDEDMPCLSFRHCSTVYIEMTDMYRIVYHANYITYAQRAIEHAFGAPGARVHGLPIVKYRAAATLGEEIAVQGTLVSCDDDGGSGGGRSRWRFELAAASDPSRVFVTAEATISWPGGAAMPPGVAESKLPSSAEPRTTDAELLPQPLPEAFTDSPKTLKVVVWSDDLDGGGNLSIRAVLNYFERIRTLSLGRGQDGELGLMRLHREGVSVVVTSISDLRVNSDGLVAGETLDVRLGAKLSRGNRVMTMYESLWREDGALVAHAEIALFCMDNETRKFRPVPEWVQEAIMLPSAVL 1101
            MRLL WSP L VCYLLPAHGFVRQRF  R G E HRTGYGR G STA S+RPT IIA  ASSTTAVDSS  AVED+ M C SFRHCSTVYIEMTDMYRIVYHANY+TYAQRAIEHAFGAPG RVH LPIVKYRAAATLG+EIAVQGTLVSCDD   SGGGRSRWRFELAAASDPSRVFVTAEAT+SWPGGAAMPPGVA  KLP SAEP  +D   L QPLPEAFTD PK LKVVVWSDDLD GGNLSIRAVLNYFERIRTLSLGRGQDGELGLMRLHREGVSVVVTSISDLRVNSDGLVAGETLDVRLGAKLSRGNRVMTMYESLW+E+G LVAHAEIALFCMDNETRKFRPVPEWVQ AIMLPSAVL
Sbjct:    1 MRLLCWSPYLMVCYLLPAHGFVRQRFRTRTGPEGHRTGYGRGGTSTATSTRPTTIIACAASSTTAVDSS--AVEDKHMSCSSFRHCSTVYIEMTDMYRIVYHANYVTYAQRAIEHAFGAPGVRVHSLPIVKYRAAATLGDEIAVQGTLVSCDDSS-SGGGRSRWRFELAAASDPSRVFVTAEATVSWPGGAAMPPGVAVIKLPRSAEPTMSDDTELLQPLPEAFTDPPKALKVVVWSDDLDVGGNLSIRAVLNYFERIRTLSLGRGQDGELGLMRLHREGVSVVVTSISDLRVNSDGLVAGETLDVRLGAKLSRGNRVMTMYESLWKENGTLVAHAEIALFCMDNETRKFRPVPEWVQVAIMLPSAVL 365
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BLAST of mRNA_E_fasciculatus_S2_contig7563.15725.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB89_ECTSI)

HSP 1 Score: 499 bits (1284), Expect = 4.930e-176
Identity = 257/276 (93.12%), Postives = 260/276 (94.20%), Query Frame = 1 
Query:  274 MTDMYRIVYHANYITYAQRAIEHAFGAPGARVHGLPIVKYRAAATLGEEIAVQGTLVSCDDDGGSGGGRSRWRFELAAASDPSRVFVTAEATISWPGGAAMPPGVAESKLPSSAEPRTTDAELLPQPLPEAFTDSPKTLKVVVWSDDLDGGGNLSIRAVLNYFERIRTLSLGRGQDGELGLMRLHREGVSVVVTSISDLRVNSDGLVAGETLDVRLGAKLSRGNRVMTMYESLWREDGALVAHAEIALFCMDNETRKFRPVPEWVQEAIMLPSAVL 1101
            MTDMYRIVYHANY+TYAQRAIEHAFGAPG RVH LPIVKYRAAATLGEEI VQGTLVSCDD   SGGGRSRWRFELAAASDPSRVFVTAEAT+SW GGAAMPPGVA SKLP SAEP  TD   L QPLPEAFTDSPKTLKVVVWSDDLDGGGNLSIRAVLNYFERIRTLSLGRGQDGELGLMRLHREGVSVVVTSISDLRVNSDGLVAGETLDVRLGAKLSRGNRVMTMYESLWRE+G LVAHAEIALFCMDNETRKFRPVPEWVQEAIMLPSAVL
Sbjct:    1 MTDMYRIVYHANYVTYAQRAIEHAFGAPGVRVHSLPIVKYRAAATLGEEITVQGTLVSCDDSS-SGGGRSRWRFELAAASDPSRVFVTAEATVSWLGGAAMPPGVAVSKLPRSAEPTMTDDTELLQPLPEAFTDSPKTLKVVVWSDDLDGGGNLSIRAVLNYFERIRTLSLGRGQDGELGLMRLHREGVSVVVTSISDLRVNSDGLVAGETLDVRLGAKLSRGNRVMTMYESLWRENGTLVAHAEIALFCMDNETRKFRPVPEWVQEAIMLPSAVL 275
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BLAST of mRNA_E_fasciculatus_S2_contig7563.15725.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTJ2_9STRA)

HSP 1 Score: 115 bits (287), Expect = 8.720e-26
Identity = 87/284 (30.63%), Postives = 141/284 (49.65%), Query Frame = 1 
Query:  268 IEMTDMYRIVYHANYITYAQRAIEHAFGAPGARVHGLPIVKYRAAATLGEEIAVQGTLVSCDDDGGSGGGRSRWRFELAAASDPSRVFVTAEATISWPGGAAMPPGVAESKLPSSAEPRTTDAELLPQPLPEAFTDSPKTLKVVVWSDDLDGGGNLSIRAVLNYFERIRTLSLGRGQDGELGLMRLHREGVSVVVTSISDLRVNSDGLVA-GETLDVRLGAKLSRGNRVMTMYESLWRE------DGALVAHAEIALFCMDNETRKFRPVPEWVQEAIMLPSAV 1098
            +E TDM+  +YH NYI +  RA +   G     + G+  ++YR AA LG+ + + GT     +D         W+  +  A +  RVFVTA   +          G A S   +SA       E +PQ        S +   +V + D+L   G LS  +V+NY ER RTLSLG  ++G   L RLH++G  +V++ ISDLR++    +A G  L+V      +R  R +++ + ++ +         L+AHA + L C+D  T+K    P+W+ E + + S++
Sbjct:   58 VEDTDMFGHMYHGNYIKWLARASQKCLGHDTVLI-GVDALRYRNAAVLGDNMVISGTF---SEDA------QAWQCSVVDARNEKRVFVTASVLL----------GTASSDAGASA--LAGKVESVPQ--------SAQYFDMVAYGDELGADGALSPSSVINYMERTRTLSLGPPEEG---LYRLHKQGTDIVISRISDLRLDHTVRIAPGAELEVVNSGSANR--RTVSVRQRVYVKAPDEVSGRRLIAHATVELLCIDGATKKLSAFPDWILERLHVISSI 306
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7563.15725.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized3.810e-21887.50protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.930e-17693.12protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized8.720e-2630.63protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7563contigE_fasciculatus_S2_contig7563:3458..5910 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score68.9
Seed ortholog evalue5.5e-09
Seed eggNOG ortholog227086.JGI_V11_78812
Model size1104
Hectar predicted targeting categorysignal peptide
Exons3
EggNOG OGs2CZXS@1,2SC25@2759
Ec32 ortholog descriptionHotDog domain
Ec32 orthologEc-27_004780.1
Cds size1104
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842417.6766832-CDS-E_fasciculatus_S2_contig7563:3457..37411696842417.6766832-CDS-E_fasciculatus_S2_contig7563:3457..3741Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7563 3458..3741 +
1696842417.6916885-CDS-E_fasciculatus_S2_contig7563:4468..50331696842417.6916885-CDS-E_fasciculatus_S2_contig7563:4468..5033Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7563 4469..5033 +
1696842417.7040787-CDS-E_fasciculatus_S2_contig7563:5655..59101696842417.7040787-CDS-E_fasciculatus_S2_contig7563:5655..5910Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7563 5656..5910 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7563.15725.1prot_E_fasciculatus_S2_contig7563.15725.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7563 3458..5910 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7563.15725.1

>prot_E_fasciculatus_S2_contig7563.15725.1 ID=prot_E_fasciculatus_S2_contig7563.15725.1|Name=mRNA_E_fasciculatus_S2_contig7563.15725.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=368bp
MRLLFWSPCLAVCYLLPAHGFVRQRFSMRIGHEEHRTGYGRRGASTAISS
RPTIIARTASSTTAVDSSSSAVEDEDMPCLSFRHCSTVYIEMTDMYRIVY
HANYITYAQRAIEHAFGAPGARVHGLPIVKYRAAATLGEEIAVQGTLVSC
DDDGGSGGGRSRWRFELAAASDPSRVFVTAEATISWPGGAAMPPGVAESK
LPSSAEPRTTDAELLPQPLPEAFTDSPKTLKVVVWSDDLDGGGNLSIRAV
LNYFERIRTLSLGRGQDGELGLMRLHREGVSVVVTSISDLRVNSDGLVAG
ETLDVRLGAKLSRGNRVMTMYESLWREDGALVAHAEIALFCMDNETRKFR
PVPEWVQEAIMLPSAVL*
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mRNA from alignment at E_fasciculatus_S2_contig7563:3458..5910+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7563.15725.1 ID=mRNA_E_fasciculatus_S2_contig7563.15725.1|Name=mRNA_E_fasciculatus_S2_contig7563.15725.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2453bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7563:3458..5910+ (Ectocarpus fasciculatus EfasUO2)
ATGCGTCTGCTGTTTTGGTCACCGTGCTTGGCGGTATGCTATTTGCTACC
GGCCCACGGCTTCGTGCGGCAGCGCTTCAGCATGAGAATAGGTCACGAGG
AACACCGCACGGGGTACGGACGCCGCGGTGCCTCGACTGCCATATCGAGT
CGACCAACAATAATTGCTCGTACGGCGTCGTCAACAACAGCGGTGGACAG
TAGTAGCAGTGCCGTCGAGGATGAAGACATGCCATGTTTGTCGTTCCGTC
ACTGCAGCACAGTTTATATCGAGATGACCGACATGTGAGTGTCTGCGTTT
CCCCGATGTAACTGGTCTCGCATCCAGTTCAGTACGTGTAGTCTTTTGTC
TACAAGCTGATAGCGCATGTCGTGGTTCTTGCGCCGGAATCACTGCTACC
CGAGGTCTTTACTGCGAAGAAGCCATCCAGAACACGTTGGAACTGTAGCT
CACACGACGGTTACAGTTTTGAAAGTATTCAGGCACAGCGTCCGTCACAA
GACTGTTCCTCCGACTGTTTTTATCGGGTCGACTCTGCTCCATGCGACTA
CTGCTGCTGTAGATCTATGGATGATGTTTGGCCACGGAGGTGTTCCTGCA
GACAGAAAGCCTCACAGCAGTACAACTCTTTTCCTGGAGATTTCGTTGTG
CTGGTTTCTTTCAGGGAAATTGGTCGTTATTTTGCCTTTTTTCGCGACCC
TGGTTTGTTACCGGGTCCGACGTAAGTTGTACCTTTCAGATATCTCCCCC
CACCGGTACATCGTTCGCCATGAGAAGAAACAGATGGTGCGAAATGCACT
TTTCCACGTTCCCCGCATGTTTGTGTTAGGATCCCGTCCATTGAGACGCC
AGACTAGACTACACCTTTCGGGATATGAGCACGAATTGGCGGAGGTCGCA
CAGGAGTAAGGCCACGTATTCCACTGTATGCAGTCCTTCTCCACCTGCCC
TCTGCGGTGCTTTTCTGGTGTAAACGATCCAAAACCCAACGCGACCGTCT
GCGCCGCGCAGGTATCGCATCGTGTACCACGCAAACTACATCACCTACGC
GCAGCGAGCAATCGAGCACGCGTTTGGCGCGCCCGGCGCCCGCGTCCACG
GCCTCCCTATCGTCAAGTACAGAGCCGCGGCCACTCTCGGCGAGGAGATA
GCCGTGCAGGGAACCCTCGTCTCGTGCGACGACGACGGCGGCAGTGGTGG
CGGGCGCTCGCGCTGGCGCTTCGAGCTAGCCGCCGCTTCCGACCCCTCTC
GGGTGTTCGTCACCGCAGAGGCCACCATTTCCTGGCCGGGAGGGGCGGCT
ATGCCCCCGGGGGTAGCGGAAAGCAAACTGCCCAGCAGCGCCGAACCAAG
GACGACTGACGCGGAGCTGCTGCCGCAGCCCTTGCCCGAGGCGTTCACCG
ACTCGCCCAAGACTCTGAAGGTGGTGGTGTGGAGCGATGACTTGGACGGA
GGGGGGAATCTCTCCATCCGTGCGGTGCTAAACTACTTCGAGCGGATACG
CACGCTCAGCCTGGGAAGAGGTCAAGACGGGGAGCTCGGGCTGATGCGAC
TGCATCGAGAGGGGGTTTCCGTGGTGGTGAGATTTTTCGTTTCTCCGGTG
TGCTCGGTGTTATAGACTTGAGACTTTTGTTGTTTCCGGATGAAAACAAG
TGCAACAATGTACTTAGCTTATTTCGTGGACGAAACAACCACGTAGTTAG
CTGGGGGATAAACGCAAGGGTGTTTGTAGCGTCCACGAGCGACGTGTGCA
GCGCTGATCCGATTGTACCAATGTACGCCCAAATAGTAACAGTGGGAGCC
TCTAATGCTCTGTACGTCCCGCCCCGGATCCGAGGCATTCGGTCTGACCT
TTGCACGTCACCGGGGCAACTCTGTAGAGGTGCATAGCCCGCCTACAGTA
AATATTAGTTGGCCAAAGCACTCGCTCAATGAACGCTTTTAGGGGTTGTT
TTTGCGAAGAGAGGAACCGACGATGGCATTAGCAGAACCAACCGTCTGGT
ACGGTAGAGTCTCGCGAAGGCGGTGAACGAAACGTTCAAGAACTGCCAGC
ATGTAAGCTAACGAATGATGGCACGAAGCTTTCAGACCAAGGCTTTCCGG
CAACGACCCACCGTTCCAGATAAATCTCCTAGAGGAATGCAATCTCTTTT
TGTCAAGAACCGCCGACCCCCAACTCCTGCGTGTACTCACGTCTCCAGGT
GACAAGTATTTCCGATCTCCGCGTGAACAGCGACGGCTTGGTTGCGGGAG
AGACGCTGGACGTGCGCCTAGGAGCAAAGCTATCGAGGGGGAACCGGGTC
ATGACCATGTACGAATCGCTGTGGAGGGAGGACGGGGCTCTCGTCGCGCA
CGCAGAGATCGCGCTGTTCTGCATGGACAACGAAACTCGCAAGTTTCGAC
CGGTTCCCGAGTGGGTGCAAGAAGCCATAATGCTACCCTCTGCCGTCCTT
TGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7563:3458..5910+

>mRNA_E_fasciculatus_S2_contig7563.15725.1 ID=mRNA_E_fasciculatus_S2_contig7563.15725.1|Name=mRNA_E_fasciculatus_S2_contig7563.15725.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1104bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7563:3458..5910+ (Ectocarpus fasciculatus EfasUO2)
ATGCGTCTGCTGTTTTGGTCACCGTGCTTGGCGGTATGCTATTTGCTACC
GGCCCACGGCTTCGTGCGGCAGCGCTTCAGCATGAGAATAGGTCACGAGG
AACACCGCACGGGGTACGGACGCCGCGGTGCCTCGACTGCCATATCGAGT
CGACCAACAATAATTGCTCGTACGGCGTCGTCAACAACAGCGGTGGACAG
TAGTAGCAGTGCCGTCGAGGATGAAGACATGCCATGTTTGTCGTTCCGTC
ACTGCAGCACAGTTTATATCGAGATGACCGACATGTATCGCATCGTGTAC
CACGCAAACTACATCACCTACGCGCAGCGAGCAATCGAGCACGCGTTTGG
CGCGCCCGGCGCCCGCGTCCACGGCCTCCCTATCGTCAAGTACAGAGCCG
CGGCCACTCTCGGCGAGGAGATAGCCGTGCAGGGAACCCTCGTCTCGTGC
GACGACGACGGCGGCAGTGGTGGCGGGCGCTCGCGCTGGCGCTTCGAGCT
AGCCGCCGCTTCCGACCCCTCTCGGGTGTTCGTCACCGCAGAGGCCACCA
TTTCCTGGCCGGGAGGGGCGGCTATGCCCCCGGGGGTAGCGGAAAGCAAA
CTGCCCAGCAGCGCCGAACCAAGGACGACTGACGCGGAGCTGCTGCCGCA
GCCCTTGCCCGAGGCGTTCACCGACTCGCCCAAGACTCTGAAGGTGGTGG
TGTGGAGCGATGACTTGGACGGAGGGGGGAATCTCTCCATCCGTGCGGTG
CTAAACTACTTCGAGCGGATACGCACGCTCAGCCTGGGAAGAGGTCAAGA
CGGGGAGCTCGGGCTGATGCGACTGCATCGAGAGGGGGTTTCCGTGGTGG
TGACAAGTATTTCCGATCTCCGCGTGAACAGCGACGGCTTGGTTGCGGGA
GAGACGCTGGACGTGCGCCTAGGAGCAAAGCTATCGAGGGGGAACCGGGT
CATGACCATGTACGAATCGCTGTGGAGGGAGGACGGGGCTCTCGTCGCGC
ACGCAGAGATCGCGCTGTTCTGCATGGACAACGAAACTCGCAAGTTTCGA
CCGGTTCCCGAGTGGGTGCAAGAAGCCATAATGCTACCCTCTGCCGTCCT
TTGA
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