mRNA_E_fasciculatus_S2_contig7560.15723.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7560.15723.1
Unique NamemRNA_E_fasciculatus_S2_contig7560.15723.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7560.15723.1 vs.
Match: Mitochondrial (ribosomal protein L46 isoform 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8Q3_ECTSI)

HSP 1 Score: 575 bits (1483), Expect = 2.010e-203
Identity = 288/308 (93.51%), Postives = 296/308 (96.10%), Query Frame = 1
Query:   67 MLARRCAMLASSSARIAKLRPLAVLVAPSCREVSSSNLTKKQQIEGFTIKDRRPPRPRVAKQKRKQYLAERKAAFEAEQEKAESLGLDWGTRSALILERLPVIVEEYTDWQRDFWDIQTTQAHYGAKFPAEMGFKYDDEKSLTMEQVLEQSPVPLAARRTPADESNDRTTLDRALDERLVLIVKPRSGDEWRLPESAWEPGETIRQTAERTAQQLLQKTATRKGQRDDVAQLHFVGNCPAGWFWRTANGEQGGQHEKFGDKVFINRVQLICGQPTVVKRQAAEHLWVTKHEIGEYLGESMGVYLKHLI 990
            M ARRC ML+SS+ R  KLRPLAVL+AP+CRE+SSSNLTKKQQIEGFTIKDRRPPRPRVAKQKRKQYLAERK AFEAEQEKA SLGLDWG RSALILERLPVIVEEYTDWQRDFWD+QT QAHYGAKFPAEMGFKYDDEKSLTMEQVLEQSPVPLA RRTPADESNDRTTLDRALDERLVLIVKPRSGDEWRLPESAWEPGETIRQTAERTAQQLL K+ATRKGQRDDVAQLHFVGNCPAGWFWRTA+ EQGGQHEKFGDKVFINRVQLICGQPTVVKRQAAEHLWVTKHEIGEYLGESMGVYLKHLI
Sbjct:    1 MFARRCTMLSSSAVRRVKLRPLAVLLAPNCRELSSSNLTKKQQIEGFTIKDRRPPRPRVAKQKRKQYLAERKDAFEAEQEKATSLGLDWGIRSALILERLPVIVEEYTDWQRDFWDLQTKQAHYGAKFPAEMGFKYDDEKSLTMEQVLEQSPVPLAPRRTPADESNDRTTLDRALDERLVLIVKPRSGDEWRLPESAWEPGETIRQTAERTAQQLLLKSATRKGQRDDVAQLHFVGNCPAGWFWRTADEEQGGQHEKFGDKVFINRVQLICGQPTVVKRQAAEHLWVTKHEIGEYLGESMGVYLKHLI 308          
BLAST of mRNA_E_fasciculatus_S2_contig7560.15723.1 vs.
Match: Mitochondrial (ribosomal protein l46 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRZ1_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.870e-27
Identity = 84/247 (34.01%), Postives = 126/247 (51.01%), Query Frame = 1
Query:  265 YLAERKAAFEAEQEKAESLGLDWGTRSALILERLPVIVEEYTDWQRDFWDIQTTQAHYGAKFPAEMGFKYDD-EKSLTMEQVLEQSPVPLAARRTPADESNDRTTLDRALDERLVLIVK-PRSGDEWRLPESAWEPGE--------TIRQTAERTAQQLLQKTATRKGQRDDVAQLHFVGNCPAGWFWRT----ANGEQGGQHEKFGDKVFINRVQLICGQPTVVKRQAAEHLWVTKHEIGEYLGES 963
            YL  R A     +  A+   L W   +A I+ER P+I++E  DW+  + ++Q   A +G  FP E+       E   + ++VL + P  LA R T AD  NDRTTL+RAL ERL L+++ P +   W LP +  E G         ++R+T E T ++ L           D  + +   N P G  WR     + G+ GG+ + +GDKVF  R Q + G+  VV     E +WVT+ E+GEYL ++
Sbjct:  102 YLQSRAAQLSRHEAAAKEANLPWRIVAASIVERHPIIMKEPEDWEAAYMEMQEEIAKHGKVFPPELNLMGQAAELDRSDDEVLPELPFKLAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRGRWDLPMAVLEGGGKGGDMKGLSMRKTHEATVRRFL----------GDKFEAYVPSNAPVGMHWRVPSEPSTGKTGGE-QTYGDKVFFYRAQHLKGRGKVVGEGVEEFVWVTREEMGEYLPQA 337          
BLAST of mRNA_E_fasciculatus_S2_contig7560.15723.1 vs.
Match: Serine (threonine-kinase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VD62_9CHLO)

HSP 1 Score: 112 bits (281), Expect = 1.910e-22
Identity = 87/261 (33.33%), Postives = 127/261 (48.66%), Query Frame = 1
Query:  346 ALILERLPVIVEEYTDWQRDFWDIQTTQAHYGAKFPAEMGFKYDDEKSLTMEQVLEQSPVPLAARRTPADESNDRTTLDRALDERLVLIVKPRSGDEWRLPESAWEPGETIRQTAERTAQQLLQKTATRKGQRDDVAQLHFVGNCPAGWFWRTANGEQGGQHEKFGDK--VFINRVQLICGQPTVVKRQA-AEHLWVTKHEIGEYLGESMGVYLKHLI*KFGERP---NFDVFGKDTRVSHDKVGGQITACEGTYLCGVPA 1110
            A++ ERLPV+V E  +W+R++++ Q   A    K+  E+  ++ D K   M++    S  P A R T AD +NDR +L R LD+RL ++V+ + G  W LP+     GET+RQTAER     ++  A R          +FVGN PAG             H   GD   +F +R QLI G P +      +EH+WVTK E+GEYL +   + +   +    E+    +    G D R   +  G Q  A  G  L    A
Sbjct:   52 AVVFERLPVVVPEDPEWEREYFEWQDGLA---GKYRKELPREFTDLKDSEMKEDAGASYEP-APRVTAADHANDRRSLKRRLDQRLFMLVRQKGG--WTLPQQENAEGETMRQTAERALADAVELEAVRP---------YFVGNAPAG-------------HAPLGDAGTLFFHRCQLIQGVPALRGGSGYSEHVWVTKEELGEYLQQPDVLAVMQKMLHANEQDLIVSHPENGTDLRWGLNDAGRQQAAAAGAQLAAALA 284          
BLAST of mRNA_E_fasciculatus_S2_contig7560.15723.1 vs.
Match: 39S (ribosomal protein L46, mitochondrial n=6 Tax=Canidae TaxID=9608 RepID=A0A3Q7SNB8_VULVU)

HSP 1 Score: 103 bits (258), Expect = 3.010e-21
Identity = 78/238 (32.77%), Postives = 115/238 (48.32%), Query Frame = 1
Query:  316 SLGLDWGTRSALILERLPVIVEEYTDWQRD----FWDIQTTQAHYG-------------AKFPAEMGFKYDDEKSLTM----EQVLEQSPVPL--AARRTPADESNDRTTLDRALDERLVLIVKPRSGDE--WRLPESAWEPGETIRQTAERTAQQLLQKTATRKGQRDDVAQLHFVGNCPAGWFWRTANGEQGGQHEKFGDKVFINRVQLICGQPTVVKRQAAEHLWVTKHEIGEYL 954
            S G  W    AL L+R P++ +  T  Q +    F  I+  ++ Y              AK  A++  + DDE+ + +    E V EQ  +     AR T AD+ NDRT+L R LD  LVL+VK + GD+  W LP++ W+PGET+R TAERT   L +     K          F+GN P G + +    +        G KVF  +  L+ G  +   ++   H+WV K E+G+YL
Sbjct:   40 SSGSPWRLLGALCLQRPPLVSKPLTPLQEEMAALFQQIEVERSRYSDHELRALDEARRLAKKKADLNDEEDDEQDILLVQDLEDVWEQKFLQFKPGARVTEADKKNDRTSLQRKLDRNLVLLVKEKLGDQDVWMLPQAEWQPGETLRGTAERTLATLSENNLEAK----------FLGNAPCGHY-KFKFPQALRTESSLGAKVFFFKALLLTGDFSRTSKKD-HHVWVCKEELGDYL 265          
BLAST of mRNA_E_fasciculatus_S2_contig7560.15723.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2E5_9STRA)

HSP 1 Score: 100 bits (250), Expect = 8.860e-21
Identity = 69/210 (32.86%), Postives = 107/210 (50.95%), Query Frame = 1
Query:  376 VEEYTDWQRDFWDIQTTQAHYGAKFPAEMGFK-YDDEKSLTMEQVLEQSPVPLAARRTPADESNDRTTLDRALDERLVLIVK-PRSGDEWRLPESAWEPGE--------TIRQTAERTAQQLLQKTATRKGQRDDVAQLHFVGNCPAGWFWRT----ANGEQGGQHEKFGDKVFINRVQLICGQPTVVKRQAAEHLWVTKHEIGEYLGES 963
            ++E  DW+  + ++Q   A +G  FP E+    +  E   + + VL + P  LA R T AD  NDRTTL+RAL ERL L+++ P +   W LP +  E G         ++R T E T ++ +           +  + +   N P G  WR     + G+ GG+ + +GDKVF  R Q + G+  VV     E +WVT+ E+GEYL ++
Sbjct:    1 MKEPEDWEAAYMEMQEEIAKHGKVFPPELNLMGHAAELDRSDDDVLPELPFKLAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRGRWDLPMAVLEGGGKGGDMKGLSMRNTHEATVRRFM----------GEKFEAYVPSNAPVGVHWRVPSEPSTGKTGGE-QAYGDKVFFYRAQHLKGRGKVVGEGVEEFVWVTREEMGEYLPQA 199          
BLAST of mRNA_E_fasciculatus_S2_contig7560.15723.1 vs.
Match: 39S (ribosomal protein L46, mitochondrial n=8 Tax=Simiiformes TaxID=314293 RepID=F7GBZ6_CALJA)

HSP 1 Score: 100 bits (250), Expect = 3.460e-20
Identity = 75/237 (31.65%), Postives = 111/237 (46.84%), Query Frame = 1
Query:  316 SLGLDWGTRSALILERLPVIVEEYTDWQRD--------------FWDIQTTQAHYGAKFPAEMGFKYD--DEKSLTMEQVLEQS------PVPLAARRTPADESNDRTTLDRALDERLVLIVKPRSGDE--WRLPESAWEPGETIRQTAERTAQQLLQKTATRKGQRDDVAQLHFVGNCPAGWFWRTANGEQGGQHEKFGDKVFINRVQLICGQPTVVKRQAAEHLWVTKHEIGEYL 954
            S G  W    AL L+R P++ + +T  Q +              + D +        +   +    YD  DE+ + + Q LE           L AR T ADE NDRT+L+R LD  LVL+V+ + GDE  W LP++ W+PGET+R TAERT   L +     K          F+GN P G + +    +        G KVF  +  L+ G  +   ++  +H+WVTK E+ +YL
Sbjct:   39 SSGSPWRLLGALCLQRPPLVSKPFTPLQEEMASLLQQIEIERSLYSDHELRALEESKRLEKKKADLYDEEDEQDILLVQDLEDMWEQRFVQFKLGARVTEADEKNDRTSLNRKLDRNLVLLVREKLGDEDVWMLPQAEWQPGETLRGTAERTLVTLSENNMEAK----------FLGNAPCGHY-KFKFPQAMRTESNLGAKVFFFKALLLTGDFSEAGKKG-QHVWVTKDELSDYL 263          
BLAST of mRNA_E_fasciculatus_S2_contig7560.15723.1 vs.
Match: 39S (ribosomal protein L46, mitochondrial n=32 Tax=Catarrhini TaxID=9526 RepID=RM46_HUMAN)

HSP 1 Score: 100 bits (250), Expect = 3.520e-20
Identity = 81/238 (34.03%), Postives = 116/238 (48.74%), Query Frame = 1
Query:  316 SLGLDWGTRSALILERLPVIVEEYTDWQRDF----WDIQTTQAHYG-------------AKFPAEMGFKYDDEKSLT---MEQVLEQS--PVPLAARRTPADESNDRTTLDRALDERLVLIVKPRSGDE--WRLPESAWEPGETIRQTAERTAQQLLQKTATRKGQRDDVAQLHFVGNCPAGWFWRTANGEQGGQHEK-FGDKVFINRVQLICGQPTVVKRQAAEHLWVTKHEIGEYL 954
            S G  W    AL L+R PV+ +  T  Q +       I+  ++ Y              AK  A++  + D++  L    +E + EQ      L AR T ADE NDRT+L+R LD  LVL+V+ + GD+  W LP++ W+PGET+R TAERT   L +     K          F+GN P G +  T    Q  + E   G KVF  +  L+ G  +    +   H+WVTK E+G+YL
Sbjct:   40 SNGSPWRLLGALCLQRPPVVSKPLTPLQEEMASLLQQIEIERSLYSDHELRALDENQRLAKKKADLHDEEDEQDILLAQDLEDMWEQKFLQFKLGARITEADEKNDRTSLNRKLDRNLVLLVREKFGDQDVWILPQAEWQPGETLRGTAERTLATLSENNMEAK----------FLGNAPCGHY--TFKFPQAMRTESNLGAKVFFFKALLLTGDFSQAGNKG-HHVWVTKDELGDYL 264          
BLAST of mRNA_E_fasciculatus_S2_contig7560.15723.1 vs.
Match: 39S (ribosomal protein L46, mitochondrial n=2 Tax=Manis TaxID=9973 RepID=UPI0018763CE2)

HSP 1 Score: 100 bits (250), Expect = 3.520e-20
Identity = 78/236 (33.05%), Postives = 113/236 (47.88%), Query Frame = 1
Query:  322 GLDWGTRSALILERLPVIVEEYTDWQRDFW----DIQTTQAHYG-------------AKFPAEMGFKYDDEKSLTMEQVLEQS------PVPLAARRTPADESNDRTTLDRALDERLVLIVKPRSGDE--WRLPESAWEPGETIRQTAERTAQQLLQKTATRKGQRDDVAQLHFVGNCPAGWFWRTANGEQGGQHEKFGDKVFINRVQLICGQPTVVKRQAAEHLWVTKHEIGEYL 954
            G  W    AL L+R P++ +  T  Q +       I+  ++ Y              AK  A+ G + DDE+++ + Q LE +           AR T ADE NDRT+L R LD  LVL+VK + GDE  W LP++ W+PGET+R TAER    L +     K          F+GN P G + +    +        G KVF  +  L+ G  +   +Q   H+WV+K E+G+YL
Sbjct:   42 GSPWRLLGALCLQRPPLVSKPLTPLQEEMAALLEQIEIERSLYSDHELRALDEAQQLAKRKADFGDE-DDEQNILLVQDLEDAWEQKFLQFKPGARITEADEKNDRTSLHRQLDRNLVLLVKEKLGDEDVWMLPQAEWQPGETLRGTAERILATLSENNMEAK----------FLGNAPCGHY-KFKFPQAVRTERSLGAKVFFFKALLLTGDFSQAGKQG-RHVWVSKEELGDYL 264          
BLAST of mRNA_E_fasciculatus_S2_contig7560.15723.1 vs.
Match: 39S (ribosomal protein L46, mitochondrial n=4 Tax=Suina TaxID=35497 RepID=F1SRT0_PIG)

HSP 1 Score: 100 bits (249), Expect = 4.800e-20
Identity = 72/233 (30.90%), Postives = 114/233 (48.93%), Query Frame = 1
Query:  331 WGTRSALILERLPVIVEEYTDWQRDFWDI-----------------QTTQAHYGAKFPAEMGFKYDDEKSLTMEQVLEQS------PVPLAARRTPADESNDRTTLDRALDERLVLIVKPRSGDE--WRLPESAWEPGETIRQTAERTAQQLLQKTATRKGQRDDVAQLHFVGNCPAGWFWRTANGEQGGQHEKFGDKVFINRVQLICGQPTVVKRQAAEHLWVTKHEIGEYL 954
            W    AL L+R P++ +  T  Q +  D+                    +A   AK  +++ ++ +DE+++ + Q LE           L AR T AD+ +DRT+L R LD  L+L+V+ + GD+  W LP+S W+PGET+RQTAERT   L +     K          F+GN P G + +    +        G KVF  +  L+ G  +   ++   H+WV+K E+G+YL
Sbjct:   45 WRLLGALCLQRPPLVTKPLTPLQEEMADLLQQIEIERSLYSDHELRALDEAQQLAKKKSDL-YEEEDEQNILLAQDLEDMWEQKFLHFKLGARLTEADKKDDRTSLHRKLDRNLILLVREKLGDQDIWMLPQSDWQPGETLRQTAERTLATLSENNMEAK----------FLGNAPCGHY-KFKFPQAMRTETSLGAKVFFFKALLLTGDFSQAGKKG-HHVWVSKEELGDYL 264          
BLAST of mRNA_E_fasciculatus_S2_contig7560.15723.1 vs.
Match: 39S (ribosomal protein L46, mitochondrial n=25 Tax=Caniformia TaxID=379584 RepID=A0A384BTS8_URSMA)

HSP 1 Score: 100 bits (249), Expect = 4.890e-20
Identity = 77/238 (32.35%), Postives = 115/238 (48.32%), Query Frame = 1
Query:  316 SLGLDWGTRSALILERLPVIVEEYTDWQRDF----WDIQTTQAHYG-------------AKFPAEMGFKYDDEKSLTM----EQVLEQSPVPL--AARRTPADESNDRTTLDRALDERLVLIVKPRSGDE--WRLPESAWEPGETIRQTAERTAQQLLQKTATRKGQRDDVAQLHFVGNCPAGWFWRTANGEQGGQHEKFGDKVFINRVQLICGQPTVVKRQAAEHLWVTKHEIGEYL 954
            S G  W    AL L+R P++ +  T  Q +       I+  ++ Y              AK  A++  + +DE+++ +    E V EQ  +     AR T ADE NDRT+L R LD  LVL+VK + GD+  W LP++ W+PGET+R TAERT   L +     K          F+GN P G + +    +        G KVF  +  L+ G  +   ++   H+WV K E+G+YL
Sbjct:   40 SSGSPWRLLGALCLQRPPLVSKALTPLQEEMAALLQQIEVERSMYSDHELRALDEAQRLAKKKADLYDEEEDEQNILLVQDLEDVWEQKFLQFKPGARITEADEKNDRTSLHRKLDRNLVLLVKEKLGDQDVWMLPQTEWQPGETLRGTAERTLATLSENNLEAK----------FLGNAPCGHY-KFKFPQAMRTESSLGAKVFFFKALLLTGDFSQTGKKG-HHVWVCKEELGDYL 265          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7560.15723.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Mitochondrial2.010e-20393.51ribosomal protein L46 isoform 2 n=2 Tax=Ectocarpus... [more]
Mitochondrial1.870e-2734.01ribosomal protein l46 n=2 Tax=Nannochloropsis gadi... [more]
Serine1.910e-2233.33threonine-kinase n=1 Tax=Micractinium conductrix T... [more]
39S3.010e-2132.77ribosomal protein L46, mitochondrial n=6 Tax=Canid... [more]
Uncharacterized8.860e-2132.86protein n=1 Tax=Nannochloropsis salina CCMP1776 Ta... [more]
39S3.460e-2031.65ribosomal protein L46, mitochondrial n=8 Tax=Simii... [more]
39S3.520e-2034.03ribosomal protein L46, mitochondrial n=32 Tax=Cata... [more]
39S3.520e-2033.05ribosomal protein L46, mitochondrial n=2 Tax=Manis... [more]
39S4.800e-2030.90ribosomal protein L46, mitochondrial n=4 Tax=Suina... [more]
39S4.890e-2032.35ribosomal protein L46, mitochondrial n=25 Tax=Cani... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7560contigE_fasciculatus_S2_contig7560:327..4918 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score578.9
Seed ortholog evalue1.4e-162
Seed eggNOG ortholog2880.D7G8Q3
Preferred nameMRPL46
Model size1536
KEGG rclassRC02416
KEGG koko:K02519,ko:K05607,ko:K08860,ko:K17427
KEGG ReactionR02085
KEGG Pathwayko00280,ko01100,ko04137,ko04140,ko04141,ko04210,ko04214,ko04932,ko05010,ko05160,ko05162,ko05164,ko05168,ko05169,map00280,map01100,map04137,map04140,map04141,map04210,map04214,map04932,map05010,map05160,map05162,map05164,map05168,map05169
KEGG ModuleM00036
Hectar predicted targeting categorymitochondrion
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019866,GO:0022411,GO:0030054,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032543,GO:0032984,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0070125,GO:0070126,GO:0071704,GO:0071840,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons5
EggNOG free text desc.mitochondrial translation
EggNOG OGsKOG4548@1,KOG4548@2759
Ec32 ortholog description39S ribosomal protein L46, mitochondrial
Ec32 orthologEc-22_002600.1
EC2.7.11.1,4.2.1.18
Cds size927
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01001,ko03011,ko03012,ko03029
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7560.15723.1prot_E_fasciculatus_S2_contig7560.15723.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7560 393..4375 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842417.4376845-UTR-E_fasciculatus_S2_contig7560:326..3921696842417.4376845-UTR-E_fasciculatus_S2_contig7560:326..392Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7560 327..392 +
1696842417.5109575-UTR-E_fasciculatus_S2_contig7560:4375..49181696842417.5109575-UTR-E_fasciculatus_S2_contig7560:4375..4918Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7560 4376..4918 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842417.452399-CDS-E_fasciculatus_S2_contig7560:392..6761696842417.452399-CDS-E_fasciculatus_S2_contig7560:392..676Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7560 393..676 +
1696842417.4616501-CDS-E_fasciculatus_S2_contig7560:1001..11931696842417.4616501-CDS-E_fasciculatus_S2_contig7560:1001..1193Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7560 1002..1193 +
1696842417.4733293-CDS-E_fasciculatus_S2_contig7560:2622..27431696842417.4733293-CDS-E_fasciculatus_S2_contig7560:2622..2743Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7560 2623..2743 +
1696842417.487845-CDS-E_fasciculatus_S2_contig7560:3492..36781696842417.487845-CDS-E_fasciculatus_S2_contig7560:3492..3678Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7560 3493..3678 +
1696842417.499207-CDS-E_fasciculatus_S2_contig7560:4231..43751696842417.499207-CDS-E_fasciculatus_S2_contig7560:4231..4375Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7560 4232..4375 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7560.15723.1

>prot_E_fasciculatus_S2_contig7560.15723.1 ID=prot_E_fasciculatus_S2_contig7560.15723.1|Name=mRNA_E_fasciculatus_S2_contig7560.15723.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=309bp
MLARRCAMLASSSARIAKLRPLAVLVAPSCREVSSSNLTKKQQIEGFTIK
DRRPPRPRVAKQKRKQYLAERKAAFEAEQEKAESLGLDWGTRSALILERL
PVIVEEYTDWQRDFWDIQTTQAHYGAKFPAEMGFKYDDEKSLTMEQVLEQ
SPVPLAARRTPADESNDRTTLDRALDERLVLIVKPRSGDEWRLPESAWEP
GETIRQTAERTAQQLLQKTATRKGQRDDVAQLHFVGNCPAGWFWRTANGE
QGGQHEKFGDKVFINRVQLICGQPTVVKRQAAEHLWVTKHEIGEYLGESM
GVYLKHLI*
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mRNA from alignment at E_fasciculatus_S2_contig7560:327..4918+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7560.15723.1 ID=mRNA_E_fasciculatus_S2_contig7560.15723.1|Name=mRNA_E_fasciculatus_S2_contig7560.15723.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4592bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7560:327..4918+ (Ectocarpus fasciculatus EfasUO2)
GCGGCGCCTACAGCAGTAGAGCACAGCCATAGCGTCTCGGTCCAGCTGTT GCTTCTGCAAGCAATCATGTTGGCTAGACGGTGTGCGATGCTTGCATCCT CTTCGGCACGAATAGCTAAGCTGCGGCCGCTGGCGGTGCTAGTAGCACCT AGTTGCCGAGAAGTTAGCTCGTCGAACTTGACGAAAAAGCAACAGATCGA GGGGTTCACCATCAAGGACCGGAGGCCTCCACGACCTCGTGTTGCGAAGC AAAAGCGGAAGCAGTACCTGGCAGAGCGAAAAGCTGCTTTCGAGGCAGAG CAGGAAAAAGCGGAAAGTCTTGGTCTGGATTGGGGTACCAGGAGTGCCCT GTGAGTCACTATAGTACGCCTCACACACTAGACTAGACTACATGATGATC AAACGCATGGATGGCGAAGAAGCGGCAGGAGCAGCAGTCACATCCTGTGG AGTACTGCTGTAGAGGCATGTAGGCAAAGCAGGCGTGCTGTGTTATAACG TACAGCACCATACCTCGTACCACCCTCTCGCCAGAAATTCAATAACAGCC TAGCCTGCTGATTCCTGAAACATGATTTGAGTACACCGTGAAACCGCCGT CTATCTGAGTCTCTTCGCGCGTCGATACCCCTCCTGCTCCCACCCACTTG TGTGTGTCTTCCCGGTTTCTTGTAGGATTCTGGAGCGGCTCCCCGTTATC GTAGAGGAGTACACTGATTGGCAGCGTGATTTCTGGGATATTCAGACCAC GCAAGCTCACTACGGCGCGAAATTCCCCGCCGAAATGGGCTTCAAGTACG ATGACGAGAAGTCTCTGACTATGGAGCAGGTGCTGGAGCAAAGCCCTGTC CCTCTCGCGGCCCGACGGTGAGAGCGTCGGCAAGCACGCACTGCCTTGGA TTCAAAGATTCAAACGCATACTGTTGCTGGGCTTGTGTGTGAGTGTTTAA GTTTTTACTTTGTGTGGTGATTTGAACTAGCTCTTCGGCGGTGACGGATG GCCAAGGTTGTTCGGTAAACCGGGTTGGCAAAGCTTGTAGGTTTTTGGAG AAAGGCAGCTCGGCCAGTGAGGGCCGAGATGGGAAAGTCTTGTATTAGAG GGTAGAGGGAACGGGAGTCCCACCACCAGAGGGGTGCATATAACACACCC ATCGGTCACGCTATTCCAATCAACCATGGAATCTCCGAAGAAACCAAGTA AGAAACTCCCTGTTGCCCTGCAATCTGCCAACTACAATCTACGTAGATCC ATGCTCCATTCAACTATCATACTTACAGCTACGATTACTCTCCCGAACTT CGAGATTACTTGGTACATTCCCAACAGCAGAGTGCCCTGATAATGCAGTA GCCTTCGCAGAGCTTTTCGATTCGACGTAGTAAACATTCTGGATAAACAT GCTATCGGGGAAGCTGGGTTATAGGGATAGGGTCTGCTTACCCCCTCCCT AATTCCTGATACGTACACCGCTGGGGTCCATCCTGATCGTTGAGCTAAAT AGAGCTGCGTGAAATGGTTCAAAAGTGGCATCTTCGTCGAGAGCAGCTCT GGAAATTTTGAGTGTTGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTG CTGTTGCTGCTCCTTGCTGTCCACGCACACCCTCACATCACGAAGGAAGC AAGCATCAAACCAACCTTTTGGGACTCTGCCGCGCTGCTGATCTTTGCAC GTTGCGTGTTTTGGTGTGGTTGGTTAACCCTGTCGGTGTATAGCCTTGCG GGGCGTGGGATGATACTTTGTCGATTCTGTCGGATCTGAGCGGTCTTCAC TGCCTTCGGCATGTCCTCACTGGCTGTATGGTGCTTTGTAGACGCTCTCT GTGACAAAACCATCCCGCTTCAAGCGGGACATCTAACAGCGTAGACTGAC ATTTCAACTACGATATGTACATGTTGCCGCGCAGCCTTGTGCAGGTGTTC GCTGCGAACTGGTTGTGCGGCTAAGGTTACACTTCCCCTTCTTCAAATTC TCTCCAACTAGGGAATTCGTCGAGGGTTTCTGTTATCATACAGATGAGTT CGACGCGTTAACCCAGACGTTTTTTTTTGTGCATCAAGAGTCGCGATATC TTAGATGAAAACATTTCAATCAAGCCCCCCTTTGCTTTCTGAGGCCGCCG AGTAACATGAAGGTTATTCAAAACGAACTTGAGTATTTCCGGTAAGGCAG CATGGCAAGGCGTGCGAGATGCACACGAGCTTGACATTGCGTCAAACTCT GGTGAGTATTGTGATTCTTGTGCATACTGTCTGTTTGCCTTCTCAGGACC CCGGCTGACGAGTCGAACGACCGCACAACTTTGGATCGGGCACTTGATGA GCGACTAGTGTTGATCGTCAAGCCTAGAAGTGGAGATGAATGGCGGCTTC CTGAGAGTGCATGGGAGGTGAGAGGGTTTGTTCTCTTGCATAATTTGTTT ATCGGTACCACTGCTTCGAGAGTTGAGCTAAAATGACAAAATTTTGTGCT TCGCGTTGTGTTTCCACACACTATACATGCAACACCTTCAAAGCTGTCTT GTGCACAGCCGCAACGACCCTTTATTTTCTACTCTGTTTACAGCAATTAT TTATCCTCAAGAATGTGTTCATGTTTCCTCCGCCTCTACGCCCAGTAGTA GTTGGCAGACAAGTTTGGGCACGTGATCAACAACTAACTAAAATCCCCAG TTGTCTATCGTTGCGGTAACACAGCACCAGGCACGAAGCACGGCGTTTTT CTAGTTGTTTATGCGATAGCCGAGTACCCTGGCTCTCACAATTTTTTCAT TCGTCTGCCGACAACTCATCGCACAGCTTGTTCATCCGGTCGTCGTCTGC AAGCGTTTAATTGCCGCGGCAGTGCCAACGAGTGCGAATTCGGCACTCGT CAAATGTCGTTAGCTGTACGCAGAGTACTGTTCAATACGTGAGTTTTTCG TTCAGAGTTCGATTCACTGTGGAACACTACCGAACAGTCGTACTGATAAC GAGTGTGTAGTTTTCGTACCACGCGGGTGTTTGCTGCAGAGGGCCAAACG GTTTCATGTTTTGTGTGAAGTTCGGAAAATGAATGCAGACGTGGCTGCCT GTTCGGTACCGGTATCTAGTGACAAACACGTTTTTTGTCGCGTGTTGTGT TTGTTCTTGCTGCCAGCCGGGAGAGACTATTCGCCAAACAGCAGAGCGAA CTGCACAACAACTGCTACAGAAAACTGCCACTCGGAAGGGTCAGCGGGAT GATGTGGCTCAGCTCCACTTCGTTGGAAACTGTCCGGCTGGCTGGTTCTG GCGCACAGCAAACGGAGAACAAGGGGGGCAACATGAGAAGTTTGGAGACA AGGTGACTGCCGATCCTACGTTGTGATGCGACGTCAATGCGCACTAGTAG AACGTGGCCTCTAAACGTTTGCTGATTTATTATGGGAACTGAACCAGCTG TCGACCCCCTCTGGGTGTGCATTGTCAACATTTGCCAAGTGACTTATTTT GCATGGAATCACGACCTCATTTGAAAAACCTATGATCCTCTGCTAGAGCA GTGTTTGGAAGGACTAGTCTGGCGGTAAGGTCACGCGCATCCCAGTGGTG AAGGGAGAATCGAGATGACGAACAGGCTGCTTGCATAACACCTAATCAGA TTAAACGACCCAATGCGCTATCGTCGAAAAGTATGTCCGCTGTAGTCTGT TAGCACGTGGGCGTAAGTAACTGAAGTGTTTGATTCTGAAGTCGGAACAG CCGAAAACAACGAACGTAGGTGCAGACTGTTTTTTTCGTTGCCACTGAGG CCTTTGCAGTTGTTGCCGTCTGGCGAAGCACGTGGCTCCGGTGGCGTTGT CTCGGGTCGGGACCACGAACCAGCGTTGACCGTCATTTCTGTCGATGTTG CTCAGGTGTTCATCAACCGGGTGCAGCTCATTTGTGGGCAGCCAACTGTG GTCAAGAGGCAAGCAGCCGAACACCTTTGGGTGACCAAGCATGAGATCGG AGAATACCTCGGGGAATCGATGGGCGTGTACTTGAAACATTTGATCTAGA AGTTTGGAGAGAGGCCAAATTTTGATGTGTTTGGCAAGGACACTCGTGTT TCTCACGACAAAGTTGGAGGACAAATTACTGCTTGTGAGGGAACATATCT GTGCGGCGTCCCTGCACGCTTTTCGTACCCTTGAGAAATTGAGGACCGCT TGATGTATGTGAAGCTATACAGGACAGATCAGATCTCTACCGATGGGCTA AAAAGGTCTTCTGAGGGATATGTCCCTGTTGAACGGTATGTTTTCCTGTT CGCTCCATGTTCATCTGAAGGACATATGTGATCGGGGTATGTTTGCTCGA TGGTAGGACATCGGTGAGCTAGCTCAGGATGTGTCACATGTGTGGGAGCC CAGGTTGCTTGATTGACGTTGATTTCGAGGGTTCAAGAGGATCTCAACGA TGGAGAGAGAAGCGTTTGTGTGATCACATCGACTGTGCAGTGTCTCGAAC GCGCACATCAGTTTCTCTACAGGTAGCCTGTGCTTCTTACCACTACCGAA GCTAAACATTCTTCCTCGGAAACGCATTCTTCTAACCCACAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7560:327..4918+

>mRNA_E_fasciculatus_S2_contig7560.15723.1 ID=mRNA_E_fasciculatus_S2_contig7560.15723.1|Name=mRNA_E_fasciculatus_S2_contig7560.15723.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=927bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7560:327..4918+ (Ectocarpus fasciculatus EfasUO2)
ATGTTGGCTAGACGGTGTGCGATGCTTGCATCCTCTTCGGCACGAATAGC
TAAGCTGCGGCCGCTGGCGGTGCTAGTAGCACCTAGTTGCCGAGAAGTTA
GCTCGTCGAACTTGACGAAAAAGCAACAGATCGAGGGGTTCACCATCAAG
GACCGGAGGCCTCCACGACCTCGTGTTGCGAAGCAAAAGCGGAAGCAGTA
CCTGGCAGAGCGAAAAGCTGCTTTCGAGGCAGAGCAGGAAAAAGCGGAAA
GTCTTGGTCTGGATTGGGGTACCAGGAGTGCCCTGATTCTGGAGCGGCTC
CCCGTTATCGTAGAGGAGTACACTGATTGGCAGCGTGATTTCTGGGATAT
TCAGACCACGCAAGCTCACTACGGCGCGAAATTCCCCGCCGAAATGGGCT
TCAAGTACGATGACGAGAAGTCTCTGACTATGGAGCAGGTGCTGGAGCAA
AGCCCTGTCCCTCTCGCGGCCCGACGGACCCCGGCTGACGAGTCGAACGA
CCGCACAACTTTGGATCGGGCACTTGATGAGCGACTAGTGTTGATCGTCA
AGCCTAGAAGTGGAGATGAATGGCGGCTTCCTGAGAGTGCATGGGAGCCG
GGAGAGACTATTCGCCAAACAGCAGAGCGAACTGCACAACAACTGCTACA
GAAAACTGCCACTCGGAAGGGTCAGCGGGATGATGTGGCTCAGCTCCACT
TCGTTGGAAACTGTCCGGCTGGCTGGTTCTGGCGCACAGCAAACGGAGAA
CAAGGGGGGCAACATGAGAAGTTTGGAGACAAGGTGTTCATCAACCGGGT
GCAGCTCATTTGTGGGCAGCCAACTGTGGTCAAGAGGCAAGCAGCCGAAC
ACCTTTGGGTGACCAAGCATGAGATCGGAGAATACCTCGGGGAATCGATG
GGCGTGTACTTGAAACATTTGATCTAG
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