mRNA_E_fasciculatus_S2_contig7559.15722.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7559.15722.1 vs.
Match: U3 (small nucleolar ribonucleoprotein protein MPP10 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTX9_ECTSI) HSP 1 Score: 574 bits (1480), Expect = 2.680e-196 Identity = 448/537 (83.43%), Postives = 462/537 (86.03%), Query Frame = 1
Query: 325 GLDSESIWSELELRNVPLEKHTKKTLARLLQSEDMSLAADIASDEEDHDGEEAGDGEAEGS------------EADMQGGDSTPLMLGGKSFSDGGDEDEEEVDGEGGSXXXXXERDGEAIIGWKGAKGEKSRRETKKSSERAQNQKTEDMFFDADDMEKFADEGTMDDDDDLEDGVLDEMYGGGEGDADSGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---AGVLSAHVEQSRRMKNKISDQERELLAEKPWALRGEVHSHDRPQNSLLEATVDVERATRVAPPPTAQHAMTLLDMIKKRCLDGNWDDVTPRDLQGPTVRKEAPHLSQDKSKEGLGELYEKEFLKKTMGVTEDDPQKGLKDELKHLFSKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGAEMSQEDRKRSRSSKKAVRRKARRQV 1890
GLDSESIWSELELRNVPLEKHTKKTLARLLQSEDMSLAADIASDEE AEG +ADM+GGDST L+LGG S SDG D+ + EVDGE ERD A KG+K+ TK SS++A+NQKTEDMFFDADDMEKFADEGTMDDDD LEDGVLDEMYG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXX GVLSAHV+ SRRMK+KISDQERELLAEKPWALRGEVHSHDRPQNSLLEATVDVERATRVAPPPTA+HAMTLLDMIKKRCLD NWDDVTPRDLQGPTVRKEAPHLSQDKSKEGLGELYEKEFLKKTMGVTEDDPQKGLK+ELKHLFSKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGAEMSQEDRKRSRSSKKAVRRKARRQ
Sbjct: 4 GLDSESIWSELELRNVPLEKHTKKTLARLLQSEDMSLAADIASDEE-----------AEGRXXXXXXXXXXXXDADMEGGDSTALLLGGGSVSDGDDDAKGEVDGEXXXDADGDERDTSAFKAR--GKGDKATGTTK-SSKQAKNQKTEDMFFDADDMEKFADEGTMDDDD-LEDGVLDEMYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAESDGDXXXXXXXXXXXXXXXXXXXXXXTGVLSAHVQHSRRMKSKISDQERELLAEKPWALRGEVHSHDRPQNSLLEATVDVERATRVAPPPTAEHAMTLLDMIKKRCLDSNWDDVTPRDLQGPTVRKEAPHLSQDKSKEGLGELYEKEFLKKTMGVTEDDPQKGLKNELKHLFSKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGAEMSQEDRKRSRSSKKAVRRKARRQA 525
BLAST of mRNA_E_fasciculatus_S2_contig7559.15722.1 vs.
Match: Mpp10 (protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNW6_9STRA) HSP 1 Score: 253 bits (646), Expect = 2.340e-75 Identity = 132/229 (57.64%), Postives = 174/229 (75.98%), Query Frame = 1
Query: 1207 MKNKISDQERELLAEKPWALRGEVHSHDRPQNSLLEATVDVERATRVAPPPTAQHAMTLLDMIKKRCLDGNWDDVTPRDLQ-GPTVRKEAPHLSQDKSKEGLGELYEKEFLKKTMGVTEDDPQKGLKDELKHLFSKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGAEMSQEDRKRSRSSKKAVRRKARRQV 1890
M+ KI + E ELL E+PWALRGEV + DRP+NSLLEA +DVERATRVAP T + +L D+I++R L+ +DDV P++++ R++AP +S DKS EGL +YEKE+LK+ +GV EDDP K LK+EL+ F++LCGKLDALCNFH+ P+A +PE+ V DV AIAMEE LP+ V+ A+ LAPEE+Y +KRGR A FLEGGAEM Q++R R+R +KK R KAR+Q
Sbjct: 1 MRGKIDELEAELLRERPWALRGEVAAKDRPENSLLEAALDVERATRVAPAITVEATASLEDVIRQRILEDKFDDVAPKNIELSAKPREDAPEVSMDKSTEGLAAVYEKEYLKQALGVEEDDPSKDLKEELRRDFARLCGKLDALCNFHFRPRAHLPEVAVATDVPAIAMEEALPTGVSTADGLAPEEVYARKRGRRAVFLEGGAEMDQDERNRARLAKKRSRNKARKQT 229
BLAST of mRNA_E_fasciculatus_S2_contig7559.15722.1 vs.
Match: Hypothetical (protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QZP6_HETAK) HSP 1 Score: 222 bits (565), Expect = 1.980e-61 Identity = 124/237 (52.32%), Postives = 167/237 (70.46%), Query Frame = 1
Query: 1180 SAHVEQSRRMKNKISDQERELLAEKPWALRGEVHSHDRPQNSLLEATVDVERATRVAPPPTAQHAMTLLDMIKKRCLDGNWDDVTPRDLQGPTV---RKEAPHLSQDKSKEGLGELYEKEFLKKTMGVTEDDPQKGLKDELKHLFSKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGAEMSQEDRKRSRSSKKAVRRKAR 1881
S H ++ +I + E+E LAEKPW ++GE + DRP+NSLLEA +DVERA R AP T + L D+IKKR L+ +DDV PR P V R E P +S +KSK GLGELYEKE+LK+ MGV ++DP K K+E+ +F KLC KLD+L NFH+TPK IP+++V+ +V AIA+EEVLP++V+ A+ALAPEE++ K +GR+ L+ EM QE+RKR+R+ KKA RRK R
Sbjct: 167 STHQRHKEKIAEQIDELEQEALAEKPWIMKGETGAADRPENSLLEAHLDVERAFRAAPRLTEETTAALEDVIKKRILEDAFDDVVPR--TAPKVDGGRAELPEVSTEKSKAGLGELYEKEYLKQVMGVEDEDPNKAEKEEMAKIFKKLCYKLDSLSNFHFTPKPVIPDLQVKVNVPAIALEEVLPAAVSAADALAPEEVHAKAKGRKG-VLQAREEMEQEERKRARAGKKAARRKDR 400
BLAST of mRNA_E_fasciculatus_S2_contig7559.15722.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZPY8_9STRA) HSP 1 Score: 208 bits (530), Expect = 1.180e-57 Identity = 121/244 (49.59%), Postives = 167/244 (68.44%), Query Frame = 1
Query: 1180 SAHVEQSRRMKNKISDQERELLAEKPWALRGEVHSHDRPQNSLLEATVDVERATRVAPPPTAQHAMTLLDMIKKRCLDGNWDDVTPRDLQGPTVRK--EAPHLSQDKSKEGLGELYEKEFLKKTMGVTEDDPQKG-----LKDELKHLFSKLCGKLDALCNFHYTPKAAIPEMKVQA-DVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGAEMSQEDRKRSRSSKKAVRRKARRQ 1887
S H QS++++ + ++ E+E+LAEKPW + GE RP NSLLEA + E AT++AP T +H L +MIK+R L +WDDV PR+L ++K E P +SQ+KSK GLGELYE+E+LKK G D +K LK E+K +F+ LCGKLDAL N+H+TP+ E +V+A V AIAMEEV+P V+DA APEE+Y KKRGR++ + G +EM Q +RKR R++KK+ RRKAR++
Sbjct: 49 SLHSIQSKKLEEQTAEIEKEMLAEKPWQMTGETKGTARPVNSLLEAAPEFEVATKMAPTITVEHTENLEEMIKRRILAEDWDDVAPRELPDIGIKKNGELPEVSQEKSKLGLGELYEREYLKKATGYDPDAAEKQSEEDKLKGEMKMIFASLCGKLDALSNYHFTPRPVGDEAEVRAVTVPAIAMEEVMPLHVSDARGAAPEEIYGKKRGRDS-VIRGESEMDQTERKRLRNAKKSARRKARKE 291
BLAST of mRNA_E_fasciculatus_S2_contig7559.15722.1 vs.
Match: U3 (small nucleolar ribonucleoprotein mpp10 (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U8M3_9STRA) HSP 1 Score: 208 bits (529), Expect = 3.560e-57 Identity = 124/245 (50.61%), Postives = 164/245 (66.94%), Query Frame = 1
Query: 1171 GVLSAHVEQSRRMKNKISDQERELLAEKPWALRGEVHSHDRPQNSLLEATVDVERATRVAPPPTAQHAMTLLDMIKKRCLDGNWDDVTPRDLQGPTV------RKEAPHLSQDKSKEGLGELYEKEFLKKTMGVTEDDPQKGLKDELKHLFSKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGAEMSQEDRKRSRSSKKAVRRKARRQ 1887
G+L++ ++ R + +I++ ERELL+E+PW LRGEV + +RP+NSLLEA VDVE A R T + + +L +MIK R +G WDDV P+ L + ++E P +SQ+K+ EGLGE+YEKE+L+ MG + + K EL LF KL KLDAL NF++TPKAA E+ VQ++V AIAMEEVLP +V LAPEE++ KKRGRE E AEM Q DR+R R KKA RRKARRQ
Sbjct: 80 GLLTSFQKEQRARRKEIAELERELLSERPWELRGEVKATERPENSLLEAVVDVELARRPEVLMTVERSQSLEEMIKARVAEGRWDDVVPQALGEEVMMNRRGHKEELPEVSQEKAGEGLGEVYEKEYLRLAMGQEGETKESKEKAELAALFRKLSAKLDALSNFNFTPKAAHVEVSVQSNVPAIAMEEVLPMAVGQGSTLAPEEVHGKKRGREGVVRES-AEMDQGDRRRLRRGKKAARRKARRQ 323
BLAST of mRNA_E_fasciculatus_S2_contig7559.15722.1 vs.
Match: Hypothetical (protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CH03_9STRA) HSP 1 Score: 202 bits (513), Expect = 2.090e-56 Identity = 111/236 (47.03%), Postives = 154/236 (65.25%), Query Frame = 1
Query: 1180 SAHVEQSRRMKNKISDQERELLAEKPWALRGEVHSHDRPQNSLLEATVDVERATRVAPPPTAQHAMTLLDMIKKRCLDGNWDDVTPRDLQGPTVRKEAPHLSQDKSKEGLGELYEKEFLKKTMGVTEDDPQKGLKDELKHLFSKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGAEMSQEDRKRSRSSKKAVRRKARRQ 1887
S+ + M++K+ + E EL+A KPW L GE RP+NSLL ++ ER ++AP T + L D+IK+R D WDDV R+ PT E P +SQ+KSKEGL ++Y K++ + +G T DP++ L+DE+ L +KL GKLD+L NFH+TPK + E+ V A+V AIA+EEV+P+ V+DA APEE+Y KKRGREA L E +QE+R +R +KKA RRK RRQ
Sbjct: 10 SSFARRQAAMQSKVEEIEEELVAAKPWQLAGETTRGKRPENSLLAVDLEFERQAKLAPEVTEESTAALEDVIKQRIADEAWDDVERREAPKPTPTSELPEVSQEKSKEGLADIYAKDYAAQILGATGPDPKQALRDEIAALMTKLTGKLDSLSNFHFTPKPVVEELAVTANVPAIAVEEVIPAGVSDAVLRAPEEVYAKKRGREA-VLRSATEATQEERGAARRAKKAARRKERRQ 244
BLAST of mRNA_E_fasciculatus_S2_contig7559.15722.1 vs.
Match: Uncharacterized (protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHQ1_GLOUD) HSP 1 Score: 207 bits (527), Expect = 3.940e-56 Identity = 119/241 (49.38%), Postives = 162/241 (67.22%), Query Frame = 1
Query: 1171 GVLSAHVEQSRRMKNKISDQERELLAEKPWALRGEVHSHDRPQNSLLEATVDVERATRVAPPPTAQHAMTLLDMIKKRCLDGNWDDVTPRDLQG--PTVRKEAPHLSQDKSKEGLGELYEKEFLKKTMGVTEDDPQKGLKDELKHLFSKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGAEMSQEDRKRSRSSKKAVRRKARRQ 1887
G+LS+H Q R+K +I++ E+E L EKPW L+GEV S RP+NSLLEA +D +R +VAP T + ++ L DMIKKR L+ ++DDV R G +K+ +S +KSKEGLGE+YEKE++K MG DD K ++E+ +F LC KLDAL N+ +TPK + E++V+ V AIAMEEV+P SV+DA APEE+Y+KKR R L+ EMSQE RK R++KK RRK +Q
Sbjct: 175 GILSSHQRQQLRLKKEITELEKEALGEKPWLLKGEVRSSARPENSLLEAILDYDRPGKVAPVITVEVSVALEDMIKKRILEDDFDDVI-RKFAGNEQDEKKKLEDVSMEKSKEGLGEIYEKEYMKSAMGFEMDDESKQDQEEIDVMFKSLCWKLDALSNYQFTPKPMVKELQVKPSVPAIAMEEVVPISVSDANLKAPEEIYEKKRKRGEAVLQSKEEMSQEQRKALRNAKKQTRRKENKQ 414
BLAST of mRNA_E_fasciculatus_S2_contig7559.15722.1 vs.
Match: Uncharacterized (protein n=2 Tax=Phytophthora TaxID=4783 RepID=G4YNZ1_PHYSP) HSP 1 Score: 202 bits (514), Expect = 7.850e-56 Identity = 113/240 (47.08%), Postives = 162/240 (67.50%), Query Frame = 1
Query: 1171 GVLSAHVEQSRRMKNKISDQERELLAEKPWALRGEVHSHDRPQNSLLEATVDVERATRVAPPPTAQHAMTLLDMIKKRCLDGNWDDVTPRDLQGPTVRK-EAPHLSQDKSKEGLGELYEKEFLKKTMGVTEDDPQKGLKDELKHLFSKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGAEMSQEDRKRSRSSKKAVRRKARRQ 1887
G++S+H Q R++ +I + E+E ++EKPW L+GEV S RP+NSLLEA +D +R + AP T + ++ L +MIKKR L+ ++DDV + K + +S +KSKEGLGE+YEKE++K MG DD K ++E++ +F LC KLDAL N+H+TPK A+ E++V+ V AIAMEEV+P SV+DA APEE+Y KKR R L+ EM+Q +RK R++KK RRK +RQ
Sbjct: 33 GIMSSHQRQRLRLQKEIKELEQEAISEKPWLLKGEVRSAARPENSLLEAVLDYDRPVKAAPVITEEVSIALEEMIKKRILEDDFDDVIRKFAGNEQDEKNKLEEVSMEKSKEGLGEIYEKEYMKTAMGFEADDESKQDQEEIEVMFKSLCWKLDALSNYHFTPKPAVKELQVKPAVPAIAMEEVVPISVSDANLKAPEEVYDKKRKRGEAVLQSKEEMTQSERKALRNAKKHARRKEKRQ 272
BLAST of mRNA_E_fasciculatus_S2_contig7559.15722.1 vs.
Match: U3 (small nucleolar ribonucleoprotein protein MPP10 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z983_9STRA) HSP 1 Score: 207 bits (527), Expect = 4.810e-55 Identity = 112/239 (46.86%), Postives = 161/239 (67.36%), Query Frame = 1
Query: 1171 GVLSAHVEQSRRMKNKISDQERELLAEKPWALRGEVHSHDRPQNSLLEATVDVERATRVAPPPTAQHAMTLLDMIKKRCLDGNWDDVTPRDLQGPTVRKEAPHLSQDKSKEGLGELYEKEFLKKTMGVTEDDPQKGLKDELKHLFSKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGAEMSQEDRKRSRSSKKAVRRKARRQ 1887
G++S+H + + + ++I E E L +KPWAL+GEV + RP+NSLLEAT++ +R TRVAP T + L D+IK+R + +DDV + ++E LS +KSKEGLGE+YEKE++K MG ++ K ++E++ +F KLC KLDAL NFH+TPK + EM+VQ+ AI+MEE +P V+DA APEE+Y KKR R+A + EM+QE+RK +R++KK RRKAR Q
Sbjct: 289 GIMSSHQRRMQSLHSQIESLEEEALGDKPWALKGEVKAAARPENSLLEATLEYDRPTRVAPTITVEVTQALEDLIKERIREDQYDDVVRKFAANDAAQREVAELSMEKSKEGLGEIYEKEYMKNAMGFEDNSDMKKEQEEIEAMFQKLCWKLDALSNFHFTPKPVVREMQVQSTAPAISMEEAVPIGVSDATMAAPEEVYDKKRKRDA-VVRSREEMTQEERKATRNAKKHARRKARAQ 526
BLAST of mRNA_E_fasciculatus_S2_contig7559.15722.1 vs.
Match: U3 (small nucleolar ribonucleoprotein protein MPP10 n=23 Tax=Phytophthora TaxID=4783 RepID=W2QWN2_PHYPN) HSP 1 Score: 206 bits (524), Expect = 9.880e-55 Identity = 114/240 (47.50%), Postives = 165/240 (68.75%), Query Frame = 1
Query: 1171 GVLSAHVEQSRRMKNKISDQERELLAEKPWALRGEVHSHDRPQNSLLEATVDVERATRVAPPPTAQHAMTLLDMIKKRCLDGNWDDVTPRDLQGPTVRK-EAPHLSQDKSKEGLGELYEKEFLKKTMGVTEDDPQKGLKDELKHLFSKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGAEMSQEDRKRSRSSKKAVRRKARRQ 1887
G++S+H Q +R++ +I D E+E ++EKPW L+GEV S RP+NSLLEA +D +R + AP T + ++ L +MIKKR L+ ++DDV + +K + +S +KSKEGLGE+YEKE++K MG DD K ++E++ +F LC KLDAL N+H+TPK A+ E++V+ V AIAMEEV+P SV+DA APEE+Y+KKR R L+ EM+Q +RK R++KK RRK +RQ
Sbjct: 288 GIMSSHQRQRQRLQKEIKDLEQEAISEKPWLLKGEVRSAARPENSLLEAVLDYDRPVKAAPVITEEVSIALEEMIKKRILEDDYDDVIRKFAGNEEDQKNKLEEVSMEKSKEGLGEIYEKEYMKTAMGFEADDESKQDQEEIEVMFKSLCWKLDALSNYHFTPKPAVKELQVKPAVPAIAMEEVVPISVSDANLKAPEEVYEKKRKRGEAVLQSKEEMTQTERKALRNAKKHARRKEKRQ 527 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7559.15722.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7559.15722.1 >prot_E_fasciculatus_S2_contig7559.15722.1 ID=prot_E_fasciculatus_S2_contig7559.15722.1|Name=mRNA_E_fasciculatus_S2_contig7559.15722.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=637bp MAKRRRGADTSPVLEASPVLEGASGTGMPQPAAGAGAATTMLALDHTTDLback to top mRNA from alignment at E_fasciculatus_S2_contig7559:599..7288- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7559.15722.1 ID=mRNA_E_fasciculatus_S2_contig7559.15722.1|Name=mRNA_E_fasciculatus_S2_contig7559.15722.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=6690bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7559:599..7288- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7559:599..7288- >mRNA_E_fasciculatus_S2_contig7559.15722.1 ID=mRNA_E_fasciculatus_S2_contig7559.15722.1|Name=mRNA_E_fasciculatus_S2_contig7559.15722.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1911bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7559:599..7288- (Ectocarpus fasciculatus EfasUO2)back to top |