mRNA_E_fasciculatus_S2_contig7556.15719.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7556.15719.1
Unique NamemRNA_E_fasciculatus_S2_contig7556.15719.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7556.15719.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G977_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 3.320e-33
Identity = 69/71 (97.18%), Postives = 69/71 (97.18%), Query Frame = 1 
Query:    1 GDITVGGRKLMVLSRQEGSIILSNKALGSKMIGHKTRSGTVVLGTYTDLSKLEARESVTWLADALASAPVR 213
            GDITVGGRKLMVLSRQEGSIILSNKALGSKMIG K RSGTVVLGTYTDLSKLEARESVTWLADALASAPVR
Sbjct:  858 GDITVGGRKLMVLSRQEGSIILSNKALGSKMIGLKGRSGTVVLGTYTDLSKLEARESVTWLADALASAPVR 928
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BLAST of mRNA_E_fasciculatus_S2_contig7556.15719.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC06_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 3.480e-31
Identity = 66/71 (92.96%), Postives = 66/71 (92.96%), Query Frame = 1 
Query:    1 GDITVGGRKLMVLSRQEGSIILSNKALGSKMIGHKTRSGTVVLGTYTDLSKLEARESVTWLADALASAPVR 213
            GDITVGG KLMVLSRQEGSIILSNK LGSKMIG K RSGTVVLGTYTDLSKLEARESVTWLAD LASAPVR
Sbjct:  809 GDITVGGSKLMVLSRQEGSIILSNKPLGSKMIGLKGRSGTVVLGTYTDLSKLEARESVTWLADVLASAPVR 879
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7556.15719.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.320e-3397.18protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.480e-3192.96protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7556contigE_fasciculatus_S2_contig7556:4675..5815 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size353
Hectar predicted targeting categoryother localisation
Exons2
Cds size186
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842416.9416528-UTR-E_fasciculatus_S2_contig7556:4674..47041696842416.9416528-UTR-E_fasciculatus_S2_contig7556:4674..4704Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7556 4675..4704 +
1696842416.9846842-UTR-E_fasciculatus_S2_contig7556:5678..58151696842416.9846842-UTR-E_fasciculatus_S2_contig7556:5678..5815Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7556 5679..5815 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842416.9594805-CDS-E_fasciculatus_S2_contig7556:4704..47641696842416.9594805-CDS-E_fasciculatus_S2_contig7556:4704..4764Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7556 4705..4764 +
1696842416.9735513-CDS-E_fasciculatus_S2_contig7556:5552..56781696842416.9735513-CDS-E_fasciculatus_S2_contig7556:5552..5678Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7556 5553..5678 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7556.15719.1prot_E_fasciculatus_S2_contig7556.15719.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7556 4705..5678 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7556.15719.1

>prot_E_fasciculatus_S2_contig7556.15719.1 ID=prot_E_fasciculatus_S2_contig7556.15719.1|Name=mRNA_E_fasciculatus_S2_contig7556.15719.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=62bp
MVLSRQEGSIILSNKALGSKMIGHKTRSGTVVLGTYTDLSKLEARESVTW
LADALASAPVR*
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mRNA from alignment at E_fasciculatus_S2_contig7556:4675..5815+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7556.15719.1 ID=mRNA_E_fasciculatus_S2_contig7556.15719.1|Name=mRNA_E_fasciculatus_S2_contig7556.15719.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1141bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7556:4675..5815+ (Ectocarpus fasciculatus EfasUO2)
GGTGACATCACGGTAGGTGGGCGCAAGTTAATGGTGCTATCGAGGCAGGA
GGGCAGCATCATCCTTTCAAACAAGGCTCTCGGAAGCAAGGTGCGGCATG
GGCTTTGTTTGTTCCTTCGTGGTCGTCCGGTCGATGCCTGCAGTCATGGC
GTCTTCTGCATTGATACCCATCGTATGCGGTTCTTCCATCTCCAAGGCCC
CCGCCTTTTGCATAGAGAACGGTCTCGCAAATATGTACGTCATTTGCGGG
TCGAAGCTCGTTTCCTTTTTTCGTGGCCACCGTCAAGCACGGGTTACTTC
GCAGGGTTCAGCGTTGGGTCCATCGCCGATATTAAGCCTCCGAACTCTTG
ATCAAAATATTTCGTGACACTTGAGCCTCAACACAACTGCTACTGTACTG
CAATAGTGTGCAGTAGGTTGCTGTTGGCGGGCCCGTTTTGTATAACCACA
ACCTGCCGGATCGAGCGACTGCGACCTCACATGCACACATGATGGCCGAA
GGGAATATTGGGCTAAACCATTGTAGCCGTAACAGTTATTTACCGGGTTT
GGAGTGAATCGCCGGCAGCAAGCTTCCAGCCGTAGTATGCCGGTTTCTCG
CTTCGTTTAAATGTTATCGGTCTGTCGCGCGGATCCTGTGCAGCTAGGTC
GTCGATGTTGCGCTTCGTCGCCGCAACTCATACCGCTGCAAGTACTCCGA
CGTTGTGCGCGGCGACGTGCGGGCACTTGAAGACGACGGAATATTCACGA
CCGTTCTCAGGGCAAAATTACCGCCTCTTATCTGAACACAGAACTCAACG
ATCATATAATATCGACGGTGTTGCCGCGGAGTATATTACGCCTTCCTCAA
TTCTTAACCCCCTTACCGCGGCTGACAGATGATCGGGCACAAGACTCGGT
CTGGCACCGTTGTCCTCGGAACCTACACCGATCTATCAAAGCTGGAGGCG
AGGGAGAGTGTGACATGGCTTGCTGATGCACTCGCGTCTGCCCCTGTTCG
TTGATGGATGCTGCCATTCTCGGGGGAATGTCTTGATCATTGTCAGTGCG
TGGTGCAGCTCAAGCGGTAACATCTGTGTAGGTCCTTTTGGTTTCGCTGT
CAAAGAAACACGGCAGATGGTACCAACAAGTGATAGCAGAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7556:4675..5815+

>mRNA_E_fasciculatus_S2_contig7556.15719.1 ID=mRNA_E_fasciculatus_S2_contig7556.15719.1|Name=mRNA_E_fasciculatus_S2_contig7556.15719.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=186bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7556:4675..5815+ (Ectocarpus fasciculatus EfasUO2)
ATGGTGCTATCGAGGCAGGAGGGCAGCATCATCCTTTCAAACAAGGCTCT
CGGAAGCAAGATGATCGGGCACAAGACTCGGTCTGGCACCGTTGTCCTCG
GAACCTACACCGATCTATCAAAGCTGGAGGCGAGGGAGAGTGTGACATGG
CTTGCTGATGCACTCGCGTCTGCCCCTGTTCGTTGA
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