mRNA_E_fasciculatus_S2_contig7550.15715.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7550.15715.1
Unique NamemRNA_E_fasciculatus_S2_contig7550.15715.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7550.15715.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7550contigE_fasciculatus_S2_contig7550:5281..7224 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size248
Hectar predicted targeting categoryother localisation
Exons2
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842416.42824-CDS-E_fasciculatus_S2_contig7550:5280..54141696842416.42824-CDS-E_fasciculatus_S2_contig7550:5280..5414Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7550 5281..5414 +
1696842416.4445622-CDS-E_fasciculatus_S2_contig7550:7111..72231696842416.4445622-CDS-E_fasciculatus_S2_contig7550:7111..7223Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7550 7112..7223 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7550.15715.1prot_E_fasciculatus_S2_contig7550.15715.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7550 5281..7223 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7550.15715.1

>prot_E_fasciculatus_S2_contig7550.15715.1 ID=prot_E_fasciculatus_S2_contig7550.15715.1|Name=mRNA_E_fasciculatus_S2_contig7550.15715.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=82bp
RRCTDHAVAPDEQEALGGVRCAAQAAGAEPRGGDPALPRHAVLEGHQGYA
ARASAEAPAAEGEQAGGKAFRLPRGWEGRGRA
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mRNA from alignment at E_fasciculatus_S2_contig7550:5281..7224+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7550.15715.1 ID=mRNA_E_fasciculatus_S2_contig7550.15715.1|Name=mRNA_E_fasciculatus_S2_contig7550.15715.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1944bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7550:5281..7224+ (Ectocarpus fasciculatus EfasUO2)
CGACGCTGCACGGACCATGCAGTCGCACCTGATGAACAAGAGGCGCTCGG
AGGTGTCCGTTGCGCCGCTCAGGCCGCTGGCGCTGAACCGCGCGGCGGAG
ATCCTGCCCTACCGAGGCACGCTGTTCTTGAAGGGTGAGCGCGACATTTT
CATACTCTGAACATTCTCACCGACGGCCTCCGGAAATGTGCACCGGCCGG
AGCGTGTGATGGTCTGATGCAACCACCCCTTATCAGCATACTGCCTGCTG
GAGACGCGTGCACGCAGGATTGCACTTGTGCGGATAGGCCATGGGCGGTA
GGCGAGGCCGATGTCGGTAACGTTCTTTGGGTGTGCAACCACAGAGAGGA
GAGCAGAAAAAATGCAGAATATTTTCTTTATTCACACGACAGACACCACG
CGGCGGAGGAAGAAGGAAGAGGTCGTCGTTGGAAAGTAAGCGGCGTGACC
ATCATCGATGATGATGATGCATCTTGCAGCGAAAACACACCGACGCGGGG
CGTGTGCCTCTACACGCGGAGTGTTTGCTCTCTTGGTTGCCTGGACAGCA
GTCGCAGCCGAGGGTTGTGCTTGTTGAATCAACCGCTGTTTGCTGGTCTG
TTGCCGGAGGACCCAGCCACGGCAGCAACTGGCGAACAAGACTGCTTGTC
GGTGGCGGAGACTTCCCGCGGCTAGGACGGCGTGTTGACTATCGAAAGGA
ACTGTTTTTAGAGCGCAGCTGCAGTACGTGTGCCATCATGGTCTATTTAG
GTCTAGTGCCTCATCCATACTGCTTCGTACCTCCGTCTGCAGACCTGGAT
CATACTCTATGTACCGGTGGTAGAGTGCTCTGTGGCAGGTACTTGCACTT
CTGTTGCTCTCAAGCAAGTTATAGCGCAAGTTGAACGAAAATGCGACTTG
TGTACGATCGCGGCGGGTGTTCCGATGTACAGCCAGCAGTACTAGATGCT
CAGTCGCTACTGCTGTCAAGGGGCGCGCTAGCTGTCGCAGTGCGGTTCCC
TCCTGGCCGCCGAGAAGAAACAACTATAATACTGCTTGTCACCGGTGCAG
ACGACAGGTTGGAGAATATTCCACCCCGCCCTTCCGCGACAAACACGCTT
AGTCCTGCATGCCTTGCAGTGTTGGGAGTGTTGTCCACTGCTGTACAGCC
AAAACGGGAGACAGCAGCGTCGACAGACATGAGATTCGATTGCAAACGGG
GCTGTGTCATTGGGGTTTGCACACCTCTGTCCACGAAACCGGACTCTTAA
GGGGTGCACAAACACGTACATATCACATCGAGCACAACACCCGGCACGTT
CACTGCTGTTGTTTTTGAATGTTGTGCACCAGTGCGCTATCAACCTCTTC
GTACGCGGAGGGCATGCGACTTGGCATTCGGGCACGTGCGAGAGATTTGC
AGTACAGCACACCCCATCACTTGAGAAACCCTTGCACGTACGCACAGCAG
TTCGCGCGCTCTTTACGTAACAGGGACAGGGAATACATGGGTTTTACTAC
TGCTGTGGGGAAGTGTTCGAGTTCTCATATTTTTTTCGTTGAAATGGAAC
CCTCAACTTCCTTACCACCAAATTCCTTAGGGTAGAGGTGCCTTCTGCTG
CACACGATTTAAATGTCGCATTCAACCAGAAACGCTCTCCTTGCAGCAGG
TATGCCCTTTTCCCCAACTCCGCGACCTACGCACCACAAAGAGAGTCACA
CCAAACAAGACCGTCTAAGAAAACTCGCCCGTCCCTCCCCTTCTCGCGTC
CTTTCCATATACGAAACAAATGGTATACGTACGTGCCGAAACAACAACTT
TCGACGGACACAACTGCAAAAAATTAAACAGTCATCAAGGGTACGCAGCT
CGTGCAAGCGCCGAAGCCCCCGCCGCAGAGGGAGAGCAAGCTGGGGGCAA
GGCTTTCCGCCTTCCTCGGGGATGGGAGGGTCGAGGCCGGGCCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7550:5281..7224+

>mRNA_E_fasciculatus_S2_contig7550.15715.1 ID=mRNA_E_fasciculatus_S2_contig7550.15715.1|Name=mRNA_E_fasciculatus_S2_contig7550.15715.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=246bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7550:5281..7224+ (Ectocarpus fasciculatus EfasUO2)
CGACGCTGCACGGACCATGCAGTCGCACCTGATGAACAAGAGGCGCTCGG
AGGTGTCCGTTGCGCCGCTCAGGCCGCTGGCGCTGAACCGCGCGGCGGAG
ATCCTGCCCTACCGAGGCACGCTGTTCTTGAAGGTCATCAAGGGTACGCA
GCTCGTGCAAGCGCCGAAGCCCCCGCCGCAGAGGGAGAGCAAGCTGGGGG
CAAGGCTTTCCGCCTTCCTCGGGGATGGGAGGGTCGAGGCCGGGCC
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