mRNA_E_fasciculatus_S2_contig7550.15714.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7550.15714.1
Unique NamemRNA_E_fasciculatus_S2_contig7550.15714.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7550.15714.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7550contigE_fasciculatus_S2_contig7550:988..1420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size433
Hectar predicted targeting categoryother localisation
Exons1
Cds size345
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842416.477146-UTR-E_fasciculatus_S2_contig7550:987..10531696842416.477146-UTR-E_fasciculatus_S2_contig7550:987..1053Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7550 988..1053 +
1696842416.5009794-UTR-E_fasciculatus_S2_contig7550:1398..14201696842416.5009794-UTR-E_fasciculatus_S2_contig7550:1398..1420Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7550 1399..1420 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842416.4893692-CDS-E_fasciculatus_S2_contig7550:1053..13981696842416.4893692-CDS-E_fasciculatus_S2_contig7550:1053..1398Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7550 1054..1398 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7550.15714.1prot_E_fasciculatus_S2_contig7550.15714.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7550 1054..1398 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7550.15714.1

>prot_E_fasciculatus_S2_contig7550.15714.1 ID=prot_E_fasciculatus_S2_contig7550.15714.1|Name=mRNA_E_fasciculatus_S2_contig7550.15714.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=115bp
MKAQPALASVCRQEVRRKACGTSAAKSYGLNMQREAHAKNFTGRNSAPKP
RPSVLLSILKPTTACDRKTEESRLENSRCGGKGHDNEVSCSVLGNEEGGV
PNLSPKPMMSVSSS*
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mRNA from alignment at E_fasciculatus_S2_contig7550:988..1420+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7550.15714.1 ID=mRNA_E_fasciculatus_S2_contig7550.15714.1|Name=mRNA_E_fasciculatus_S2_contig7550.15714.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=433bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7550:988..1420+ (Ectocarpus fasciculatus EfasUO2)
GGACAGGGGCAACGCTGTGGGTGAGGACGGGGATCCGCGAAAACGGCCCG
CCAGGCAACAGGACCGATGAAAGCCCAGCCCGCGCTCGCTTCAGTGTGTC
GTCAAGAGGTGCGAAGAAAAGCATGTGGGACGTCAGCTGCCAAAAGCTAT
GGCCTCAACATGCAACGTGAAGCGCATGCAAAAAATTTCACTGGCAGGAA
CAGCGCCCCCAAGCCGAGGCCGTCCGTGCTTCTTTCGATCTTAAAACCCA
CGACAGCGTGTGATCGAAAGACGGAGGAGAGCCGGCTGGAGAACTCTCGG
TGCGGCGGGAAGGGGCACGACAACGAAGTCTCTTGCTCTGTTCTCGGGAA
CGAGGAGGGGGGAGTTCCGAACCTGTCTCCGAAGCCGATGATGTCCGTGT
CTTCTTCTTGAGGGTGGCGTTTTCGTCGCCGTC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7550:988..1420+

>mRNA_E_fasciculatus_S2_contig7550.15714.1 ID=mRNA_E_fasciculatus_S2_contig7550.15714.1|Name=mRNA_E_fasciculatus_S2_contig7550.15714.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=345bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7550:988..1420+ (Ectocarpus fasciculatus EfasUO2)
ATGAAAGCCCAGCCCGCGCTCGCTTCAGTGTGTCGTCAAGAGGTGCGAAG
AAAAGCATGTGGGACGTCAGCTGCCAAAAGCTATGGCCTCAACATGCAAC
GTGAAGCGCATGCAAAAAATTTCACTGGCAGGAACAGCGCCCCCAAGCCG
AGGCCGTCCGTGCTTCTTTCGATCTTAAAACCCACGACAGCGTGTGATCG
AAAGACGGAGGAGAGCCGGCTGGAGAACTCTCGGTGCGGCGGGAAGGGGC
ACGACAACGAAGTCTCTTGCTCTGTTCTCGGGAACGAGGAGGGGGGAGTT
CCGAACCTGTCTCCGAAGCCGATGATGTCCGTGTCTTCTTCTTGA
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