mRNA_E_fasciculatus_S2_contig754.15707.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig754.15707.1
Unique NamemRNA_E_fasciculatus_S2_contig754.15707.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig754.15707.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig754contigE_fasciculatus_S2_contig754:24921..25707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size772
Hectar predicted targeting categoryother localisation
Exons2
Cds size390
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842415.6088517-UTR-E_fasciculatus_S2_contig754:24920..253001696842415.6088517-UTR-E_fasciculatus_S2_contig754:24920..25300Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig754 24921..25300 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842415.6193159-CDS-E_fasciculatus_S2_contig754:25300..254311696842415.6193159-CDS-E_fasciculatus_S2_contig754:25300..25431Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig754 25301..25431 +
1696842415.636023-CDS-E_fasciculatus_S2_contig754:25448..257071696842415.636023-CDS-E_fasciculatus_S2_contig754:25448..25707Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig754 25449..25707 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig754.15707.1prot_E_fasciculatus_S2_contig754.15707.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig754 25301..25707 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig754.15707.1

>prot_E_fasciculatus_S2_contig754.15707.1 ID=prot_E_fasciculatus_S2_contig754.15707.1|Name=mRNA_E_fasciculatus_S2_contig754.15707.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=130bp
MTESDTKILAAARHVEHVLSFPTESIHAFLVREALVLPPPLRPYRIRTSF
TGYDATAALTESYTTRAGHLGACAWCTLSENTTLPRNIITRPFARHMYWH
TFFCHLTRKKRFPSFSKSVLRMSTRRTRTF
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mRNA from alignment at E_fasciculatus_S2_contig754:24921..25707+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig754.15707.1 ID=mRNA_E_fasciculatus_S2_contig754.15707.1|Name=mRNA_E_fasciculatus_S2_contig754.15707.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=787bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig754:24921..25707+ (Ectocarpus fasciculatus EfasUO2)
CATCCGAGCGAATACAGAGCGGAAAAGAGGGGTCAAGCATGGTCGCCTCG
TCCAACGCCAGTTCATGTTGAGTGCTGCATCATGAGATACGAATGTTGAC
ATAAGGTAGGGGTCCCTCTCTGTTCGTTGTACCGCTATGCCATCAACCAC
GCTCCCCTATCATATGCCCAAGCCTTGCCGAGCTTTCAAGCTCTAACGCC
CCGCTTTTCTCTCACAACTGTCAGAGAATGGGTATGGGGGGATCATGGCA
TGTTTTCCTGTCCCGTTTATCGCAAGGTTGGGTGTTTCCGTTGGAAAAGT
GACCAGCTCGGGAAGAAGGAAACGGATTCCAGTTTTTTCAACGCCTGCCG
GTGGCGTCGTGCCCTTTCTGCTGCATCACTATGACCGAGTCTGACACGAA
AATTCTTGCTGCCGCACGACACGTGGAACACGTGCTCTCTTTCCCAACTG
AATCCATCCACGCCTTTCTCGTCAGGGAAGCTCTTGTTCTCCCACCTCCT
CTCCGTCCCTAACCCCCCGCATTATGTTCCGTATTCGCACTAGCTTCACA
GGCTATGATGCCACCGCTGCCTTGACCGAGAGCTACACAACACGAGCAGG
ACACCTGGGCGCATGTGCTTGGTGTACGCTAAGCGAAAACACTACCCTGC
CCAGAAATATCATCACCCGCCCATTTGCCCGTCACATGTATTGGCACACT
TTCTTTTGTCACCTGACGAGAAAAAAGCGATTCCCGTCCTTTTCTAAGTC
CGTCTTGCGCATGTCCACACGTCGAACACGGACCTTC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig754:24921..25707+

>mRNA_E_fasciculatus_S2_contig754.15707.1 ID=mRNA_E_fasciculatus_S2_contig754.15707.1|Name=mRNA_E_fasciculatus_S2_contig754.15707.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=390bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig754:24921..25707+ (Ectocarpus fasciculatus EfasUO2)
ATGACCGAGTCTGACACGAAAATTCTTGCTGCCGCACGACACGTGGAACA
CGTGCTCTCTTTCCCAACTGAATCCATCCACGCCTTTCTCGTCAGGGAAG
CTCTTGTTCTCCCACCTCCTCTCCGTCCCTACCGTATTCGCACTAGCTTC
ACAGGCTATGATGCCACCGCTGCCTTGACCGAGAGCTACACAACACGAGC
AGGACACCTGGGCGCATGTGCTTGGTGTACGCTAAGCGAAAACACTACCC
TGCCCAGAAATATCATCACCCGCCCATTTGCCCGTCACATGTATTGGCAC
ACTTTCTTTTGTCACCTGACGAGAAAAAAGCGATTCCCGTCCTTTTCTAA
GTCCGTCTTGCGCATGTCCACACGTCGAACACGGACCTTC
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