mRNA_E_fasciculatus_S2_contig7535.15700.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7535.15700.1
Unique NamemRNA_E_fasciculatus_S2_contig7535.15700.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7535.15700.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK27_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 4.680e-42
Identity = 120/318 (37.74%), Postives = 173/318 (54.40%), Query Frame = 3 
Query:  816 LVHEFN-SSPRIYSADDLSVRLHVRHGCLRDGQRAGPISIMRNERLLVACGGCSYFVSAVVDCQPPGPF----EAPLDLDFRVGEE-EDGLAWNDLDDDYR--QEYLGSLRDAHE--VLQREGDGGSWDLIKDQDVSVVYDETCRAFFVRAKIHHFSQGCLARKLNLQNSSLDERVLFGRPSKRELEFVNATNRSLTFLVLPTSCSQSACTSIVLGAEMAGI-GANVEISRALKKAVLFAATECLVVTVPPRETEGHPTVGETCPFETCTLPRNTGNEARVILATIDETTISLWFSRILVERTRFAVLPNQFSAKVPP 1736
            LV +F+ ++   Y   D  VRL VR  CL++G+ AGPIS++ ++R +V  G   + +S ++DCQP G      + PL LDF  GEE ED    +D D+D    +E L  LR  ++  V  R  +G  W+L   +D +  +D+  + +F+R KI HFS  CL  +L+L +S     V  GR  KR+LEFVNAT++ + F VLPT  S SA  SI  G E+ GI G  V + R  +  ++ AAT     +VP ++  G P  G+ CP  T  +P+    EARV + T D      W + +  ERT+  VLP  FS    P
Sbjct:  781 LVDQFDWTTDETYFDADAGVRLVVRPDCLKEGEVAGPISVVTDKRHIVERGDGLFLLSTMIDCQPSGTIFQDPQNPLVLDFVFGEEDEDSQGTDDTDEDTEDGKEDLAILRATYKARVFWRMEEGQPWEL--HEDGAWDFDDQLKKYFLRVKIRHFSDVCLGTELSLHSSCDSCVVSRGRTKKRQLEFVNATDKKIVFKVLPTGYSTSATKSINAGVEVPGIVGVTVGLDRESETVIMSAATAPSTFSVPFKKKAGTPKAGDVCPAHTYNIPKKMRGEARVYMYTSDRQ--EPWLNEVHPERTQLVVLPPMFSGGPTP 1094
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BLAST of mRNA_E_fasciculatus_S2_contig7535.15700.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY5_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 1.250e-5
Identity = 40/78 (51.28%), Postives = 51/78 (65.38%), Query Frame = 3 
Query:  183 LPPSSMPDEVEDPSPPVGQCTVDLVEDTAGPAGFEAEVPSAAVSDETKHAHLLAEQDSVGA--VEDRVGAADAEEAES 410
            +P  S+ D+VE+ S PV + TVD VE +A PA  EA V S  VSDETK AH+LAEQD+ G   V+D    A+AE  +S
Sbjct: 4039 VPFPSVSDKVENASRPVEEDTVDGVESSAAPADLEAAVSSPTVSDETKDAHILAEQDTAGVHVVDDSATPANAEVTDS 4116
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7535.15700.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized4.680e-4237.74protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.250e-551.28protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7535contigE_fasciculatus_S2_contig7535:846..3750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score61.2
Seed ortholog evalue1.7e-06
Seed eggNOG ortholog2880.D8LGG5
Model size2331
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
Cds size1635
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7535.15700.1prot_E_fasciculatus_S2_contig7535.15700.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7535 1345..3468 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842415.2079895-UTR-E_fasciculatus_S2_contig7535:845..13441696842415.2079895-UTR-E_fasciculatus_S2_contig7535:845..1344Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7535 846..1344 -
1696842415.2562225-UTR-E_fasciculatus_S2_contig7535:3468..34821696842415.2562225-UTR-E_fasciculatus_S2_contig7535:3468..3482Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7535 3469..3482 -
1696842415.2684596-UTR-E_fasciculatus_S2_contig7535:3567..37501696842415.2684596-UTR-E_fasciculatus_S2_contig7535:3567..3750Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7535 3568..3750 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842415.220402-CDS-E_fasciculatus_S2_contig7535:1344..20401696842415.220402-CDS-E_fasciculatus_S2_contig7535:1344..2040Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7535 1345..2040 -
1696842415.2312531-CDS-E_fasciculatus_S2_contig7535:2179..26651696842415.2312531-CDS-E_fasciculatus_S2_contig7535:2179..2665Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7535 2180..2665 -
1696842415.242741-CDS-E_fasciculatus_S2_contig7535:3015..34681696842415.242741-CDS-E_fasciculatus_S2_contig7535:3015..3468Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7535 3016..3468 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7535.15700.1

>prot_E_fasciculatus_S2_contig7535.15700.1 ID=prot_E_fasciculatus_S2_contig7535.15700.1|Name=mRNA_E_fasciculatus_S2_contig7535.15700.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=545bp
MPDEVEDPSPPVGQCTVDLVEDTAGPAGFEAEVPSAAVSDETKHAHLLAE
QDSVGAVEDRVGAADAEEAESSVPSAAVSDEKQDAAGAGTQVSPAVVENS
TPTTALNEAENAAVPPPSMPDEVEDPSRPAVDPCTVDLVEDTAGPAGFEA
KSEDNRKPANAPASKKGIPQDVQIAEIHEKPAAATTPSQHPRERPTRRRP
GKACFSLVHEFNSSPRIYSADDLSVRLHVRHGCLRDGQRAGPISIMRNER
LLVACGGCSYFVSAVVDCQPPGPFEAPLDLDFRVGEEEDGLAWNDLDDDY
RQEYLGSLRDAHEVLQREGDGGSWDLIKDQDVSVVYDETCRAFFVRAKIH
HFSQGCLARKLNLQNSSLDERVLFGRPSKRELEFVNATNRSLTFLVLPTS
CSQSACTSIVLGAEMAGIGANVEISRALKKAVLFAATECLVVTVPPRETE
GHPTVGETCPFETCTLPRNTGNEARVILATIDETTISLWFSRILVERTRF
AVLPNQFSAKVPPVGQREFAPRDFSLVQTAGMSNSNAPVSTVSS*
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mRNA from alignment at E_fasciculatus_S2_contig7535:846..3750-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7535.15700.1 ID=mRNA_E_fasciculatus_S2_contig7535.15700.1|Name=mRNA_E_fasciculatus_S2_contig7535.15700.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2905bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7535:846..3750- (Ectocarpus fasciculatus EfasUO2)
GGGAGCAACACCGCAGCATCGCTGCCAACTACTACGCCCGCCAGCAGCGC
GTGCCAGGACTCCTTTGAGGATACCTCTTGGCTAGCGGACAAGCAAGACA
CGGTGGTTTCAGTGGAGGATATCGTGGCTCCAGCGGACTGTTCCGTTCCA
TCCGCTGCCGTGCCCGATGAAGAACAGGATGCTGTGGGTGCCGGAAGCGA
AGTGCCACCAGCGGTGTTCGAGAACAACACACCTACCACCGCTCTGAGTG
AAGCGAGGGACGCCGCAGTACCGCCCTCCTCCATGCCCGACGAGGTAGAA
GATCCCTCTCCACCAGTGGGCCAGTGCACGGTCGATTTAGTGGAGGACAC
CGCAGGTCCCGCCGGGTTCGAGGCGGAGGTGCCATCCGCTGCTGTGTCCG
ACGAGACCAAACATGCCCACCTACTCGCCGAGCAAGACAGTGTGGGTGCG
GTGGAGGACAGGGTGGGTGCAGCCGATGCTGAAGAAGCGGAATCTTCCGT
TCCATCCGCTGCCGTTTCCGATGAAAAACAGGATGCCGCGGGTGCCGGAA
CGCAAGTGTCACCAGCGGTGGTCGAGAACAGCACACCTACCACCGCTCTG
AATGAAGCGGAGAACGCTGCAGTACCGCCCCCCTCCATGCCCGACGAGGT
AGAAGATCCCTCTCGACCAGCAGTGGACCCATGCACCGTCGATCTAGTGG
AGGACACCGCAGGTCCCGCCGGTTTCGAAGCGAAGGTGCCATCCGCTGTC
GTGTCCGTCGAGACCAAAGATGCCCACCTACTCGCCGAGCAAGAAACGGT
GAGTGTAGTGGACGATAGCGTGGCTACCGCCGATGCTGCATGTACACGTT
CCAGCGCGGGGGGTGCCTCAAAGGGAGGAGTGGCGGCAGAAATAGATCAA
CACGGGGGAGAGATGCGATACCTATTCCGCACGAAATTGTTTACTCCGGA
CCAGAGATTCGCCGGCACGGAAATACCCTCAGTCTCGCTAACCTGTTGCT
CAACACCACCTACTCGAAGCTCAGCCGCCGGTTCTTGTTCGCCCATGCGT
CTTTTCGTGCGTATTTCTCGTGCATGTTGTGGCAGTCAGAGGACAATCGA
AAGCCGGCGAACGCGCCCGCGTCGAAAAAGGGGATACCTCAGGATGTACA
GATCGCCGAGATCCACGAAAAACCCGCAGCTGCTACTACTCCCTCTCAGC
ACCCCCGCGAGCGCCCGACTCGTCGCAGGCCAGGAAAAGCATGTTTTTCA
TTGGTGCATGAGTTCAATTCGTCCCCGCGCATATACAGTGCGGACGATTT
GAGCGTCCGCCTACACGTGCGACACGGCTGCCTGCGGGATGGGCAACGTG
CGGGCCCAATATCAATCATGCGGAACGAGAGGTTGCTGGTGGCATGCGGC
GGTTGCTCGTATTTTGTTTCGGCGGTGGTTGATTGTCAACCCCCAGGTCC
ATTCGAAGCGCCGCTGGACCTCGACTTTCGCGTCGGAGAAGAAGAGGACG
GCCTGGCTTGGAACGACCTGGACGATGACTATCGTCAAGAGTACCTCGGA
AGCCTCCGGGACGCGCACGAGGTAAGATTGGCCCTAATGGCGTGCAAGGC
TTGTCCACGGCATACAGTACTGAATCAGGGGTGGCAGAATTAATTGCCTG
CTGCGGACTGAGTATATATAAGTCGCGCGTCTGTCTTTTTTGCTATTGAT
CCGTCGACAGGTTCTTCAGCGAGAGGGAGATGGCGGTTCCTGGGACCTCA
TCAAAGACCAAGACGTCTCTGTTGTTTACGACGAAACGTGCAGGGCCTTC
TTCGTTCGGGCTAAAATTCACCACTTCAGTCAAGGCTGTTTAGCACGCAA
GCTGAATCTACAAAACAGCAGCCTGGACGAGCGCGTGTTGTTTGGGCGAC
CAAGCAAGAGGGAGCTGGAGTTTGTGAACGCTACCAATAGGTCGCTGACG
TTTCTCGTGCTGCCGACCTCCTGTTCCCAAAGTGCCTGCACCTCGATCGT
GTTAGGTGCGGAGATGGCGGGAATAGGAGCGAACGTAGAGATAAGCCGAG
CTTTGAAGAAAGCCGTTCTGTTTGCCGCGACGGAATGCCTGGTTGTTACG
GTTCCACCAAGGGAGACGGAGGGGCATCCGACTGTTGGGGAGACATGCCC
CTTCGAAACTTGCACTCTGCCGAGGAACACAGGAAACGAAGCAAGGGTAA
TCTTGGCCACGATCGACGAAACAACGATATCCCTGTGGTTCTCGCGCATC
CTAGTGGAAAGGACTCGCTTCGCGGTGTTGCCCAACCAGTTCTCCGCCAA
AGTGCCTCCCGTAGGGCAACGCGAATTCGCGCCGCGTGACTTTTCTCTGG
TGCAAACCGCGGGTATGTCCAACTCGAATGCTCCAGTATCAACAGTGTCG
TCCTGAGTCGACGAAAGAAATCGGTCGTAATTTGGTCGCCCTGCCTGCGT
AATCGTGGTAATTTGTTGTAACAGGCCGAAGGTAGCTCAGGCCTCTAACC
TTTCTCGTTGTGTGAAAGGAGGCCTGCTGTAGCGACTTGGCAAGGACAAG
AATGATCATCGTTTGTTGCTCCGAGTATTTTTTTCGATTGTGTGAATAGC
ATCTTAGAAAGTATTTGCGATGTGTCAAATATATGAGCAATAGACTAAAA
GCCCGGTATGATAGTGTTGAGTGTTGCTCCCCCCTCTCCAGGCATTTCAT
CTGCGACCTCTACTGCTGCGCCTCTTCGGGCTGCTACCACCTCGTTGGGG
ATTAGCCCATCCAATAGGAGTGCCGCCTTGAGGTGCGGGAACAGAGCTGA
GGTCGTCTCGACAGCTCCCCCGACCGTCTACAGGTCAAACCGGCATGCGC
CAAGCATTTCCTACGATCTACGACAATTGGTCGGAATGGCTAAATAATTC
AGATA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7535:846..3750-

>mRNA_E_fasciculatus_S2_contig7535.15700.1 ID=mRNA_E_fasciculatus_S2_contig7535.15700.1|Name=mRNA_E_fasciculatus_S2_contig7535.15700.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1635bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7535:846..3750- (Ectocarpus fasciculatus EfasUO2)
ATGCCCGACGAGGTAGAAGATCCCTCTCCACCAGTGGGCCAGTGCACGGT
CGATTTAGTGGAGGACACCGCAGGTCCCGCCGGGTTCGAGGCGGAGGTGC
CATCCGCTGCTGTGTCCGACGAGACCAAACATGCCCACCTACTCGCCGAG
CAAGACAGTGTGGGTGCGGTGGAGGACAGGGTGGGTGCAGCCGATGCTGA
AGAAGCGGAATCTTCCGTTCCATCCGCTGCCGTTTCCGATGAAAAACAGG
ATGCCGCGGGTGCCGGAACGCAAGTGTCACCAGCGGTGGTCGAGAACAGC
ACACCTACCACCGCTCTGAATGAAGCGGAGAACGCTGCAGTACCGCCCCC
CTCCATGCCCGACGAGGTAGAAGATCCCTCTCGACCAGCAGTGGACCCAT
GCACCGTCGATCTAGTGGAGGACACCGCAGGTCCCGCCGGTTTCGAAGCG
AAGTCAGAGGACAATCGAAAGCCGGCGAACGCGCCCGCGTCGAAAAAGGG
GATACCTCAGGATGTACAGATCGCCGAGATCCACGAAAAACCCGCAGCTG
CTACTACTCCCTCTCAGCACCCCCGCGAGCGCCCGACTCGTCGCAGGCCA
GGAAAAGCATGTTTTTCATTGGTGCATGAGTTCAATTCGTCCCCGCGCAT
ATACAGTGCGGACGATTTGAGCGTCCGCCTACACGTGCGACACGGCTGCC
TGCGGGATGGGCAACGTGCGGGCCCAATATCAATCATGCGGAACGAGAGG
TTGCTGGTGGCATGCGGCGGTTGCTCGTATTTTGTTTCGGCGGTGGTTGA
TTGTCAACCCCCAGGTCCATTCGAAGCGCCGCTGGACCTCGACTTTCGCG
TCGGAGAAGAAGAGGACGGCCTGGCTTGGAACGACCTGGACGATGACTAT
CGTCAAGAGTACCTCGGAAGCCTCCGGGACGCGCACGAGGTTCTTCAGCG
AGAGGGAGATGGCGGTTCCTGGGACCTCATCAAAGACCAAGACGTCTCTG
TTGTTTACGACGAAACGTGCAGGGCCTTCTTCGTTCGGGCTAAAATTCAC
CACTTCAGTCAAGGCTGTTTAGCACGCAAGCTGAATCTACAAAACAGCAG
CCTGGACGAGCGCGTGTTGTTTGGGCGACCAAGCAAGAGGGAGCTGGAGT
TTGTGAACGCTACCAATAGGTCGCTGACGTTTCTCGTGCTGCCGACCTCC
TGTTCCCAAAGTGCCTGCACCTCGATCGTGTTAGGTGCGGAGATGGCGGG
AATAGGAGCGAACGTAGAGATAAGCCGAGCTTTGAAGAAAGCCGTTCTGT
TTGCCGCGACGGAATGCCTGGTTGTTACGGTTCCACCAAGGGAGACGGAG
GGGCATCCGACTGTTGGGGAGACATGCCCCTTCGAAACTTGCACTCTGCC
GAGGAACACAGGAAACGAAGCAAGGGTAATCTTGGCCACGATCGACGAAA
CAACGATATCCCTGTGGTTCTCGCGCATCCTAGTGGAAAGGACTCGCTTC
GCGGTGTTGCCCAACCAGTTCTCCGCCAAAGTGCCTCCCGTAGGGCAACG
CGAATTCGCGCCGCGTGACTTTTCTCTGGTGCAAACCGCGGGTATGTCCA
ACTCGAATGCTCCAGTATCAACAGTGTCGTCCTGA
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