mRNA_E_fasciculatus_S2_contig7533.15699.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7533.15699.1
Unique NamemRNA_E_fasciculatus_S2_contig7533.15699.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7533.15699.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTG8_9PHAE)

HSP 1 Score: 429 bits (1103), Expect = 1.430e-147
Identity = 215/252 (85.32%), Postives = 233/252 (92.46%), Query Frame = 1 
Query:    1 MIIRPRQSSLSPVAVAAASAALLLG-SSPAALGAPVVVTDYKQLVGTIGSNDDYGTGERFSREGIVLVHKGDESCSPDFDLLGLSGFDKHPEMYSLVSVDAEHADKELLDKLGVDPAILSKPSKCPSLSVVPRRSTVEAPAVSLPALDKKGSYHLNAVKTQQVSVGIVNEMDFPLDIHYQWWDDPARPTHIRTLSPGTENWMLSFKTTVVLALNKETQEEVSRFLVKGHGLFTVAERSCTAETCGTSEGAET 753
            M +RPRQSSL+PVAVA ASAALLL  SSP   GAPVVVTDYKQLVGTIGSN+DY TGERF+REG+VLVHKGDESC+PDFD LGLS F  HP+MYSLVSVDA+HADKELLDKLGVDPA LS+P KCPSLS+VPRRSTVEAPAV LP LDK+GSYHLNAVKTQQVSVGIVNEMDF LDIHYQWW++P +PTHIRTL+PGTENWMLS+KTT+VLALNKETQEEVSR+LVKGHGLFTVAERSCTAETCGTSEG ET
Sbjct:    1 MSVRPRQSSLNPVAVALASAALLLSTSSPVVSGAPVVVTDYKQLVGTIGSNNDYDTGERFAREGMVLVHKGDESCAPDFDTLGLSVFGDHPDMYSLVSVDADHADKELLDKLGVDPATLSEPKKCPSLSIVPRRSTVEAPAVILPTLDKRGSYHLNAVKTQQVSVGIVNEMDFDLDIHYQWWNEPVKPTHIRTLAPGTENWMLSYKTTLVLALNKETQEEVSRYLVKGHGLFTVAERSCTAETCGTSEGTET 252
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7533.15699.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.430e-14785.32protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7533contigE_fasciculatus_S2_contig7533:3455..7348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score432.6
Seed ortholog evalue1.3e-118
Seed eggNOG ortholog2880.D8LR21
Model size753
Hectar predicted targeting categorysignal peptide
Exons5
EggNOG OGs2DE90@1,2S5PQ@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_004670.1
Cds size753
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842415.1281612-CDS-E_fasciculatus_S2_contig7533:3454..36361696842415.1281612-CDS-E_fasciculatus_S2_contig7533:3454..3636Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7533 3455..3636 +
1696842415.1463583-CDS-E_fasciculatus_S2_contig7533:5699..58321696842415.1463583-CDS-E_fasciculatus_S2_contig7533:5699..5832Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7533 5700..5832 +
1696842415.156004-CDS-E_fasciculatus_S2_contig7533:6194..63251696842415.156004-CDS-E_fasciculatus_S2_contig7533:6194..6325Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7533 6195..6325 +
1696842415.1669657-CDS-E_fasciculatus_S2_contig7533:6694..68231696842415.1669657-CDS-E_fasciculatus_S2_contig7533:6694..6823Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7533 6695..6823 +
1696842415.1778805-CDS-E_fasciculatus_S2_contig7533:7170..73481696842415.1778805-CDS-E_fasciculatus_S2_contig7533:7170..7348Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7533 7171..7348 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7533.15699.1prot_E_fasciculatus_S2_contig7533.15699.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7533 3455..7348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7533.15699.1

>prot_E_fasciculatus_S2_contig7533.15699.1 ID=prot_E_fasciculatus_S2_contig7533.15699.1|Name=mRNA_E_fasciculatus_S2_contig7533.15699.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=251bp
MIIRPRQSSLSPVAVAAASAALLLGSSPAALGAPVVVTDYKQLVGTIGSN
DDYGTGERFSREGIVLVHKGDESCSPDFDLLGLSGFDKHPEMYSLVSVDA
EHADKELLDKLGVDPAILSKPSKCPSLSVVPRRSTVEAPAVSLPALDKKG
SYHLNAVKTQQVSVGIVNEMDFPLDIHYQWWDDPARPTHIRTLSPGTENW
MLSFKTTVVLALNKETQEEVSRFLVKGHGLFTVAERSCTAETCGTSEGAE
T
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mRNA from alignment at E_fasciculatus_S2_contig7533:3455..7348+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7533.15699.1 ID=mRNA_E_fasciculatus_S2_contig7533.15699.1|Name=mRNA_E_fasciculatus_S2_contig7533.15699.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3894bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7533:3455..7348+ (Ectocarpus fasciculatus EfasUO2)
ATGATCATCCGACCGCGACAAAGCTCCCTTTCGCCCGTGGCGGTGGCGGC
GGCCTCGGCGGCGTTGCTGCTGGGCTCGTCCCCTGCTGCCCTCGGCGCCC
CGGTGGTTGTCACCGACTACAAGCAGCTTGTTGGAACGATCGGTTCAAAC
GACGATTACGGCACCGGCGAGCGCTTCTCCAGGTAGGCCCAGCAGCAGCA
GTAAGGCGTTCCCTTGGTGATCACTCCCCTCCCTTGGGTGGTGGTGGTGG
TGGTGGGCGAGAGCGTGGGGCTCGGTGTGCGCCTGCTGCTGCTGCCTTTG
TATTTTCCGTGCACACAGCAGCAGTATTCGCTTCCCGCATTACTCCGCTT
TCTCGGTGGTTCCTTCAAGTTTCCTTCCCAACCGCACTCTCTCAGCGTCT
CTCACATCTGTTGGGTTAGTCCGATCTCCCTCTCTCTCTACTCTCCGTTG
TTGTCCAGCGGCAGCGGGGGGGGGGGGGGGGGGGAGACATAGTGTACAAA
CGCGCAGGATTACCTTGTTTTTGGGGGGGGGGAATTTCACAGATTTGGCC
CAACCCGTTTTTTTTTTTTGTGTGGGGGNNNNNNNNNNGCCCTATCCTCT
TTGCGTTTGCGTCTCTTTTGGGGTTTGTGGGGGTGGTGGGGGGGGGGAGT
GTGGGTTTCGGTGTGGGCCGGGGGGGGCGGGGGGGGTGTTGTGGGGAGAC
ATAGTGTACAGACGCGCAGGATTACCTCGATTTTGGAGTGCGTGAAGTTG
CCAGACTTGGCGCAACCGCTTTTTTCATTGTGGTTGCGGGCGGTTCGGCG
CCAGCCAGTTTTTTTCGCCCACGCTGTCGGAACGACTCTTTTAGGAACGA
TTTTGGTTTTTGCTCCCGTGTCTACTCTGTTGTACAGCAGTACGCATCTC
TCCTGTACAACGTATCTGGCACAGATGAGTAGTGAACGCGGCTACAACGA
GTCCGCCTTGCTTTTCGGCGGCTAGTGGGGGGCATAGATTCGCCATCGTG
GCGGAGCTCTGTGTTCGGCGCTGCAGGACGAAGAAGTATCTATCTTGTTT
GATATGCATACAATATGGTTGCGCTGCATTCTGTCAGGTGTGTCTGGGAG
ACTCAAACGATGCACGTTTTTGGTGGCTGCGGTACATATCATACGCATAC
CAGCGGTCGTACAGAGTTCTGCCCGTGATGCGGTGGAACCGCCGTACAAC
AGCAGTTACCCAGCGGAGGTTCGCGTACATGCGCGCGGCGAATGAGATCC
CCGTCTCTTGCTTTTGGGGGGGGGCGATTGTTGCACACCTTGATGGGTAT
AGAAAGTGAACCTCCACTCATCCCGGCTTCATACAAAATCAATAATCAAA
TCTCGCTTGCATGACGAGATCCTGGCGTCTGGTTGTTCCGCCAGGAGTCA
ACCGCCATTGGCCATTCTCCACCAGAGAGCAACCCCAACCTATTTACTTC
AAAGTACAATAGTACGATATTGGTTTCAAGGAAGACAGATGCGCATGGTT
GTAGGTATTGTCTCGAACGGGTGATCTTTCTGTAGGTTCAAGCACGGCAG
ACTGGTCCTTTGGGGGCGATTGATACACGTGTCCGCCACCGTGAGGGTCC
GCGCCAATCAAATGCCCGCCTTCCGACCAACTATGCATATGCATTATTAC
AACACTTTGTTGTGATCGCGAGGTCGCCCGCGGGCCGCCGGCCTGCCTGA
TCGGTTGCCTCCTCAAGAATGACTCCCGAGGCAAAAAATGGACAGTTCGG
AAAGCTCCACGAAACCACTGCGCTGTTTGTTCTTGTTGATGTTATTGTTT
TCGTCCCATCTACAGCAGTATTTCCGGGCGCGGCAGCCTACAGCAGCAGT
CTACGCTTATCGGTTGGATGTATGTTTTGAGCGGCAATGTTAATGTTTTG
ACGCGGCAGTTGAGGTTACCCCCCCGGTTCTTTTTTGTGCAAACCCCGAG
GCAGCGCAACCCTCAACTAAACCCTCGTACCCGCCGAAACGCCCGGCCAG
CCGTACGATACGATCGTACGATTGCAAACGCACAAGTACAGTAACTCCAA
CCCATCCCTTCGACTGCTGTGGTTGTATCTCTCGAACGGGCAGCTTCGTT
GTCTTGCATGTACTTTCTAGAAAACAATGCTGAAATAGCAGAGTATTATT
AGTGCGGTTGGTGTTCAAAAGCGGCCGTACCATGTAGCAAGACAAGATGT
GGCCGTGTGCCTGAAAAACAGCGCGATTATGTATCAATCACGCAGGGAAG
GGATAGTGCTTGTGCACAAGGGAGATGAGAGCTGCTCCCCGGACTTCGAC
CTCCTCGGCCTGTCGGGCTTCGACAAGCACCCAGAGATGTACTCGCTCGT
GTCTGTGGATGCCGAGCACGCGGACAAGGTACATATGCATATGAGAAAAG
GGGTTGGTTGATTGGTTTTTGTACGCATATGTAGAGGCAGACATGGTGGT
GGAAGGTGGAGAGGCTGTATAACAGAGGGGAAGAAGGCAGAAGGAACGAC
CTCGCTGCCGGGGAAGGATTTTTGTTTTTCTTGTGTTTCATCATTAAAAA
AGCAGCGCTTACACTACTCCGCAGCTTCTCTGCGATGTAGGAGCTCCAAC
CCGTGGATCACACAGGAGAGAGATGGTAATATAAATATGCACAAGCGTTC
GATTGAACGACGTGACTTGCTGCCTGTATGCGCTCTGTGCTGAAAACCCC
ATGTGTTGTTGTTTCGTTTTGTTGTTATCGTTGGTGGCAGGAGCTGCTGG
ACAAGCTGGGTGTCGATCCTGCCATCCTCTCCAAACCGAGCAAATGCCCC
TCGCTGAGTGTCGTTCCGAGGCGCTCCACCGTAGAAGCTCCGGCGGTCAG
TTTGCCCGCGCTCGACAAGAAGTGAGTGACTGTTTTGTCGTACCCAGTTT
ACTCGCTGCTCACCCCTCCTGCCGTCAAGAATTAGCGTCGTCTGGTTTCT
CCCTTGGTGATTTTTCTTTTGTTCTTGGAGTGACCTTTACAGTTTGTTTG
TTTTGCGGGGGCCCGTCTTGTTCGTTTGACCTTTGTTCGACCTTTGTTTG
TCTCTCTGTCTCCCTTTGTCTATCTGTTGTGTGGCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCACTCTCTCATCTCTTGCTCTCTCTCTCACTCTCTC
CTCTCTTTCTCTTTCCCCCTCTCCACCTCTCTCTCCTCCCTCTTCTCTGC
CTTTCTACGCATCTTTCTTGCTCGTGTCCTCCAACAAAAGGGGAAGCTAC
CATCTCAACGCCGTCAAGACCCAGCAGGTCTCCGTGGGCATCGTGAACGA
GATGGACTTCCCGCTGGACATCCACTACCAGTGGTGGGACGACCCGGCCA
GGCCGACGCACATCAGGACGTGAGACGAGAAGAAGAGAGATGGTTCTTGT
CGACGCCATGCTCTCAAGAAACGCACTTTCAGAAAGGGCAGTGGTGGCGG
AAGGAATGGAAAGCAGTTTTTTTGTGCCGTGGATCAGGCACGGGGTTTGC
ATTGTGTAGTTGAGACTGTTGTGGTTGGAGCTGCGCCTATGTCCGTGCTT
GTAATAACATTAGAGGTGCTACTACAACTGCTGCTGTTATAGAGACATTG
AGGTGCTGCCGCTGTGATGTGCATGTACTCGCTGCGAAGCTACCTCGCCA
CGAGACAGACAAGCCCAAAGCACAACCTTTGCTCAAACCACAACACCACC
ATCACCCATCCATCAGGCTTTCGCCAGGGACGGAGAACTGGATGCTGAGC
TTCAAGACCACCGTGGTGTTGGCCCTCAACAAGGAGACCCAGGAGGAGGT
GTCGAGGTTCCTCGTCAAAGGGCACGGGCTCTTCACCGTGGCGGAGAGGT
CGTGCACCGCCGAGACCTGCGGCACTTCGGAGGGGGCGGAGACG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7533:3455..7348+

>mRNA_E_fasciculatus_S2_contig7533.15699.1 ID=mRNA_E_fasciculatus_S2_contig7533.15699.1|Name=mRNA_E_fasciculatus_S2_contig7533.15699.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=753bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7533:3455..7348+ (Ectocarpus fasciculatus EfasUO2)
ATGATCATCCGACCGCGACAAAGCTCCCTTTCGCCCGTGGCGGTGGCGGC
GGCCTCGGCGGCGTTGCTGCTGGGCTCGTCCCCTGCTGCCCTCGGCGCCC
CGGTGGTTGTCACCGACTACAAGCAGCTTGTTGGAACGATCGGTTCAAAC
GACGATTACGGCACCGGCGAGCGCTTCTCCAGGGAAGGGATAGTGCTTGT
GCACAAGGGAGATGAGAGCTGCTCCCCGGACTTCGACCTCCTCGGCCTGT
CGGGCTTCGACAAGCACCCAGAGATGTACTCGCTCGTGTCTGTGGATGCC
GAGCACGCGGACAAGGAGCTGCTGGACAAGCTGGGTGTCGATCCTGCCAT
CCTCTCCAAACCGAGCAAATGCCCCTCGCTGAGTGTCGTTCCGAGGCGCT
CCACCGTAGAAGCTCCGGCGGTCAGTTTGCCCGCGCTCGACAAGAAGGGA
AGCTACCATCTCAACGCCGTCAAGACCCAGCAGGTCTCCGTGGGCATCGT
GAACGAGATGGACTTCCCGCTGGACATCCACTACCAGTGGTGGGACGACC
CGGCCAGGCCGACGCACATCAGGACGCTTTCGCCAGGGACGGAGAACTGG
ATGCTGAGCTTCAAGACCACCGTGGTGTTGGCCCTCAACAAGGAGACCCA
GGAGGAGGTGTCGAGGTTCCTCGTCAAAGGGCACGGGCTCTTCACCGTGG
CGGAGAGGTCGTGCACCGCCGAGACCTGCGGCACTTCGGAGGGGGCGGAG
ACG
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