mRNA_E_fasciculatus_S2_contig7528.15690.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7528.15690.1
Unique NamemRNA_E_fasciculatus_S2_contig7528.15690.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7528.15690.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7528contigE_fasciculatus_S2_contig7528:98..835 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size738
Hectar predicted targeting categoryother localisation
Exons1
Cds size549
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842414.3137748-UTR-E_fasciculatus_S2_contig7528:97..2201696842414.3137748-UTR-E_fasciculatus_S2_contig7528:97..220Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7528 98..220 -
1696842414.3389134-UTR-E_fasciculatus_S2_contig7528:769..8351696842414.3389134-UTR-E_fasciculatus_S2_contig7528:769..835Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7528 770..835 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842414.329286-CDS-E_fasciculatus_S2_contig7528:220..7691696842414.329286-CDS-E_fasciculatus_S2_contig7528:220..769Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7528 221..769 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7528.15690.1prot_E_fasciculatus_S2_contig7528.15690.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7528 221..769 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7528.15690.1

>prot_E_fasciculatus_S2_contig7528.15690.1 ID=prot_E_fasciculatus_S2_contig7528.15690.1|Name=mRNA_E_fasciculatus_S2_contig7528.15690.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=183bp
MHHECGSSTTNGQLRRRQSANRANADDNHKRYSSRGEKVTTSFIFTLLCM
CYFVPNDHHRRTNPHHPNVLLRLQHHKRLDHRIPFLRLRNDHRYRSFIAP
TPSSWAFRFFICCRKAPRPSLGLVSSQVHMDTDMYRVVRRRFCASFHGKA
SKLHTACRRNPHNRPPRCGSQTNRSPMNSKQP*
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mRNA from alignment at E_fasciculatus_S2_contig7528:98..835-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7528.15690.1 ID=mRNA_E_fasciculatus_S2_contig7528.15690.1|Name=mRNA_E_fasciculatus_S2_contig7528.15690.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=738bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7528:98..835- (Ectocarpus fasciculatus EfasUO2)
GTGAACTATCCATGTTGTAGCTCTCTCCTCGACAGCAACAGCCAACGTGG
TCCCACTGAAGGCAGAATGCACCACGAGTGTGGCTCGTCCACAACCAATG
GCCAGCTACGCCGGAGACAATCTGCCAACCGAGCAAATGCTGACGACAAC
CACAAGCGTTACAGCAGCCGAGGCGAAAAAGTCACGACATCTTTCATTTT
CACTCTGCTGTGTATGTGTTATTTCGTTCCAAACGACCACCACAGAAGAA
CCAACCCCCACCATCCCAACGTCCTCTTGCGTCTCCAACACCATAAGCGC
CTTGACCACCGAATACCATTCTTACGCTTACGGAATGACCATCGCTACCG
TTCATTTATAGCCCCCACGCCCTCTTCCTGGGCATTTCGTTTTTTTATTT
GTTGTCGAAAGGCACCACGTCCTTCTTTAGGCCTGGTGTCCTCCCAGGTG
CACATGGACACAGACATGTACCGCGTTGTGCGCCGCCGCTTTTGCGCATC
TTTCCATGGAAAAGCAAGCAAATTACACACCGCTTGTAGGCGCAACCCAC
ACAACCGCCCTCCGAGATGCGGCAGCCAAACCAACCGTTCCCCGATGAAC
TCTAAACAACCTTAACTACGTACCTACGTACCAGACGCCAACGCCGACCG
TGCAAACACCGGCATCCCACACTCGTTGGCATGCCTCGTCAATGGTGAAA
GAATATCGAACAACCGTAGCCCTCGGTCGTTGGGAGGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7528:98..835-

>mRNA_E_fasciculatus_S2_contig7528.15690.1 ID=mRNA_E_fasciculatus_S2_contig7528.15690.1|Name=mRNA_E_fasciculatus_S2_contig7528.15690.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=549bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7528:98..835- (Ectocarpus fasciculatus EfasUO2)
ATGCACCACGAGTGTGGCTCGTCCACAACCAATGGCCAGCTACGCCGGAG
ACAATCTGCCAACCGAGCAAATGCTGACGACAACCACAAGCGTTACAGCA
GCCGAGGCGAAAAAGTCACGACATCTTTCATTTTCACTCTGCTGTGTATG
TGTTATTTCGTTCCAAACGACCACCACAGAAGAACCAACCCCCACCATCC
CAACGTCCTCTTGCGTCTCCAACACCATAAGCGCCTTGACCACCGAATAC
CATTCTTACGCTTACGGAATGACCATCGCTACCGTTCATTTATAGCCCCC
ACGCCCTCTTCCTGGGCATTTCGTTTTTTTATTTGTTGTCGAAAGGCACC
ACGTCCTTCTTTAGGCCTGGTGTCCTCCCAGGTGCACATGGACACAGACA
TGTACCGCGTTGTGCGCCGCCGCTTTTGCGCATCTTTCCATGGAAAAGCA
AGCAAATTACACACCGCTTGTAGGCGCAACCCACACAACCGCCCTCCGAG
ATGCGGCAGCCAAACCAACCGTTCCCCGATGAACTCTAAACAACCTTAA
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