mRNA_E_fasciculatus_S2_contig7523.15686.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7523.15686.1
Unique NamemRNA_E_fasciculatus_S2_contig7523.15686.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7523.15686.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7523contigE_fasciculatus_S2_contig7523:5061..5729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size669
Hectar predicted targeting categoryother localisation
Exons1
Cds size339
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842413.8950028-UTR-E_fasciculatus_S2_contig7523:5060..51641696842413.8950028-UTR-E_fasciculatus_S2_contig7523:5060..5164Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7523 5061..5164 +
1696842413.9207609-UTR-E_fasciculatus_S2_contig7523:5503..57291696842413.9207609-UTR-E_fasciculatus_S2_contig7523:5503..5729Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7523 5504..5729 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842413.9066193-CDS-E_fasciculatus_S2_contig7523:5164..55031696842413.9066193-CDS-E_fasciculatus_S2_contig7523:5164..5503Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7523 5165..5503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7523.15686.1prot_E_fasciculatus_S2_contig7523.15686.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7523 5165..5503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7523.15686.1

>prot_E_fasciculatus_S2_contig7523.15686.1 ID=prot_E_fasciculatus_S2_contig7523.15686.1|Name=mRNA_E_fasciculatus_S2_contig7523.15686.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=113bp
MSIDRRAVPPPRALLCASTSFRSFSFQHESGRFFCSERGVDVSFREREVL
MLGLRKCDRSLHPKRVNETRQSLSLLACPPWVCRADETLLGGRRFLRQVQ
EDVLKTSTTGCS*
back to top

mRNA from alignment at E_fasciculatus_S2_contig7523:5061..5729+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7523.15686.1 ID=mRNA_E_fasciculatus_S2_contig7523.15686.1|Name=mRNA_E_fasciculatus_S2_contig7523.15686.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=669bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7523:5061..5729+ (Ectocarpus fasciculatus EfasUO2)
TATGGTATGGCCTGTAGCAGGAAGGCTGTTGCGGGGGGGCGGACTGGCAC
GACGACGTCCCCCGCAACATTGGCGAGCGTTGATGTGGTGTGGCCGCGAT
TGCAATGTCGATCGATCGACGTGCTGTGCCACCTCCTCGTGCTTTGCTGT
GTGCAAGTACATCGTTTCGAAGTTTTTCTTTTCAGCACGAATCTGGACGC
TTTTTTTGTTCCGAGAGAGGTGTTGATGTTTCATTCCGAGAGAGAGAGGT
GTTAATGTTGGGACTTCGGAAATGCGATCGATCACTTCATCCCAAGAGAG
TGAATGAAACCCGACAATCCTTATCCTTGCTGGCTTGTCCACCGTGGGTG
TGCCGGGCTGATGAGACCCTTTTGGGCGGGCGGAGGTTCTTAAGACAGGT
ACAAGAGGATGTTCTTAAGACAAGTACAACAGGATGTTCTTAAGACAAGT
ACAACAGGATGTTCTTAAGACAAGTACAACAGGAGGTTCTTAAGACAACT
ACAACAGGATGTTCTTAAGACAAGTACAACAGGAGGTTCTTAAGACAACT
ACAACAGGATGCTGAAAGACAACTACAACAGGATGCTGAAAGACAACCAG
GTATCGCTGCTGCGTCTTGCATTAATAGTGCCGAGGTGGCAGATGTTGGG
ACGGATACAGCTCCGATTG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7523:5061..5729+

>mRNA_E_fasciculatus_S2_contig7523.15686.1 ID=mRNA_E_fasciculatus_S2_contig7523.15686.1|Name=mRNA_E_fasciculatus_S2_contig7523.15686.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=339bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7523:5061..5729+ (Ectocarpus fasciculatus EfasUO2)
ATGTCGATCGATCGACGTGCTGTGCCACCTCCTCGTGCTTTGCTGTGTGC
AAGTACATCGTTTCGAAGTTTTTCTTTTCAGCACGAATCTGGACGCTTTT
TTTGTTCCGAGAGAGGTGTTGATGTTTCATTCCGAGAGAGAGAGGTGTTA
ATGTTGGGACTTCGGAAATGCGATCGATCACTTCATCCCAAGAGAGTGAA
TGAAACCCGACAATCCTTATCCTTGCTGGCTTGTCCACCGTGGGTGTGCC
GGGCTGATGAGACCCTTTTGGGCGGGCGGAGGTTCTTAAGACAGGTACAA
GAGGATGTTCTTAAGACAAGTACAACAGGATGTTCTTAA
back to top