mRNA_E_fasciculatus_S2_contig7505.15672.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7505.15672.1
Unique NamemRNA_E_fasciculatus_S2_contig7505.15672.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7505.15672.1 vs.
Match: NB-ARC (and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL58_ECTSI)

HSP 1 Score: 416 bits (1070), Expect = 5.370e-135
Identity = 205/235 (87.23%), Postives = 221/235 (94.04%), Query Frame = -2
Query:    2 WMASATVGLLDMASVGPLTPVCKAFTALIEAAEGAIEVAENLEELVSWCSFLVGVFIKHGKQEGNLRPVEKPMKEFVATTVELAKRAKTLGTRGRCTALLCHRRDGKQVQDFDVKLRRIWDDIKGVTLLAFYADFRATLPPQTGDMARVPQNAPNLPPAFVERGDIIKAVVQDLVATDRATNAAHVLRGMPGGGKTVAANAVVHCEDVHRSFKDGVFWVQVGQVGTGNPMALLQG 706
            WMASATVGLLDMASVGPLTPVCKAFT+LIEAAEGAIEVA+NLEELVSWCSFLVGVFI+HGKQE NLRP+ KPMK+FVATT+ELAKRAK +G RG+CTALLCHRRDGKQVQDFDVKLR IWDDI+GVTLLAFY+DFRATLPP+T  MARVP+NA  LPPAFVER D+ KAVV+DLVATDRATNAAHVLRGMPGGGKT+AA AVV CEDV RSFKDG+FWVQVGQVGTGNPMALLQG
Sbjct:   85 WMASATVGLLDMASVGPLTPVCKAFTSLIEAAEGAIEVAKNLEELVSWCSFLVGVFIEHGKQEDNLRPIAKPMKDFVATTIELAKRAKAMGARGKCTALLCHRRDGKQVQDFDVKLRHIWDDIQGVTLLAFYSDFRATLPPKTAYMARVPKNAKQLPPAFVERRDLFKAVVKDLVATDRATNAAHVLRGMPGGGKTIAAKAVVRCEDVRRSFKDGIFWVQVGQVGTGNPMALLQG 319          
BLAST of mRNA_E_fasciculatus_S2_contig7505.15672.1 vs.
Match: NB-ARC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L982_9PHAE)

HSP 1 Score: 322 bits (826), Expect = 2.820e-105
Identity = 155/235 (65.96%), Postives = 192/235 (81.70%), Query Frame = -2
Query:    2 WMASATVGLLDMASVGPLTPVCKAFTALIEAAEGAIEVAENLEELVSWCSFLVGVFIKHGKQEGNLRPVEKPMKEFVATTVELAKRAKTLGTRGRCTALLCHRRDGKQVQDFDVKLRRIWDDIKGVTLLAFYADFRATLPPQTGDMARVPQNAPNLPPAFVERGDIIKAVVQDLVATDRATNAAHVLRGMPGGGKTVAANAVVHCEDVHRSFKDGVFWVQVGQVGTGNPMALLQG 706
            WMAS  VGLL++ASVGPL P+C+AF  LI+AAEGA E  ENL EL++WC+FL  V ++HGK+   L PV KP+++FV+TT +LAKRAK L TR +C ALLC  RDGKQ+QDFD KLR IW+DI+GVT+L   A+FRA  PP+TG+MA++P NAP LPPAFVER  +++AV QDL A +RAT+ A VLRG+PGGGKTVAA++VV CE+V RSFKDG+FWVQVGQVGTGNP ALL+G
Sbjct:   44 WMASGVVGLLNVASVGPLMPICEAFKGLIQAAEGAAEADENLRELIAWCAFLTDVLLQHGKEVDALAPVMKPLRDFVSTTNQLAKRAKRLATRRKCAALLCFARDGKQIQDFDAKLRSIWNDIQGVTILWVSAEFRAARPPKTGEMAKIPHNAPALPPAFVERSGLVEAVAQDLAAAERATDTADVLRGIPGGGKTVAASSVVRCENVRRSFKDGIFWVQVGQVGTGNPTALLKG 278          
BLAST of mRNA_E_fasciculatus_S2_contig7505.15672.1 vs.
Match: NB-ARC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK53_9PHAE)

HSP 1 Score: 234 bits (597), Expect = 5.500e-72
Identity = 126/239 (52.72%), Postives = 162/239 (67.78%), Query Frame = -2
Query:    2 WMASATVGLLDMASVGPLTPVCKAFTALIEAAEGAIEVAENLEELVSWCSFLVGVFIKHGKQEGNLRPVEKPMKEFVATTVELAKRAKTLGTRGRCTALLCHRRDGKQVQDFDVKLRRIWDDIKGVTLLAFYADF----RATLPPQTGDMARVPQNAPNLPPAFVERGDIIKAVVQDLVATDRATNAAHVLRGMPGGGKTVAANAVVHCEDVHRSFKDGVFWVQVGQVGTGNPMALLQG 706
            WMAS  VGLLD+ASVGPLTPVC+AFTALIEAA+GA+EV ENL ELV+WC+FLVGV I+HGKQ  NL+ V KP+ EFVATT ELAKRA  +  R +C A LCH++D K +  FD KLRR W DI+G+ +L            + P    DMA VP  A  LPP+ V+R  +   +++ L ATD A+ A +VL GM G GK++ A++VV  E+V + F+ G FW++VG  G     AL +G
Sbjct:   66 WMASTAVGLLDVASVGPLTPVCQAFTALIEAAQGAMEVVENLRELVTWCAFLVGVLIEHGKQVDNLKAVNKPLNEFVATTGELAKRANVVAGRSKCMAFLCHKKDAKMMASFDDKLRRFWTDIQGLAVLDIQEIVTRMEERSRPLPLPDMADVPAAALKLPPSHVKRVGLEAEILKSLTATD-ASGAPYVLLGMGGAGKSLLASSVVRTEEVRKHFRAGAFWLRVGPGGEDQLQALFEG 303          
BLAST of mRNA_E_fasciculatus_S2_contig7505.15672.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 7.980e-55
Identity = 105/183 (57.38%), Postives = 129/183 (70.49%), Query Frame = -2
Query:  173 WMASATVGLLDMASVGPLTPVCKAFTALIEAAEGAIEVAENLEELVSWCSFLVGVFIKHGKQEGNLRPVEKPMKEFVATTVELAKRAKTLGTRGRCTALLCHRRDGKQVQDFDVKLRRIWDDIKGVTLL-----AFYADFRATLPPQTGDMARVPQNAPNLPPAFVERGDIIKAVVQDLVATD 706
            WMAS  VGLLD+ASVGPL PVCKAFTALIEAA+GA EV ENL ELV+WC+FLVGVFI+HGKQ  NL+ + KP+ E V+TT ELAKRAK +  RG+CTAL CH++D K +  FD KLRR+W DI+G+ +L         + R+   P  G MA VP  A  LPP+ V+R  +   +V  L ATD
Sbjct:  102 WMASTAVGLLDIASVGPLIPVCKAFTALIEAAQGATEVVENLRELVTWCAFLVGVFIEHGKQVDNLQKIAKPLNELVSTTGELAKRAKVVAGRGKCTALFCHKKDAKTIASFDAKLRRLWTDIRGLAILDIQQIVIRLEERSRPVPVPG-MADVPAAALKLPPSHVKRVGLEAEIVNSLTATD 283          
BLAST of mRNA_E_fasciculatus_S2_contig7505.15672.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU13_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 1.260e-54
Identity = 92/123 (74.80%), Postives = 102/123 (82.93%), Query Frame = -2
Query:  122 MKEFVATTVELAKRAKTLGTRGRCTALLCHRRDGKQVQDFDVKLRRIWDDIKGVTLLAFYADFRATLPPQTGDMARVPQNAPNLPPAFVERGDIIKAVVQDLVATDRATNAAHVLRGMPGGGK 490
            MK+FVATT+ELAKRA +LG RG+C ALLC R+DGK VQDF VKLRR WD I+GVTLLAFY  FRATL P TGDM RVP+NAP LPPA VER  +I+A VQDLV   RATNAAHVLRGMPGGG+
Sbjct:    1 MKDFVATTIELAKRATSLGARGKCMALLCRRKDGKHVQDFKVKLRRTWDAIQGVTLLAFYDVFRATLLPGTGDMVRVPKNAPQLPPAIVERRHLIEATVQDLVVMGRATNAAHVLRGMPGGGQ 123          
BLAST of mRNA_E_fasciculatus_S2_contig7505.15672.1 vs.
Match: NB-ARC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 3.340e-50
Identity = 112/240 (46.67%), Postives = 145/240 (60.42%), Query Frame = -2
Query:    2 WMASATVGLLDMASVGPLTPVCKAFTALIEAAEGAIEVAENLEELVSWCSFLVGVFIKHGKQEGNLRPVEKPMKEFVATTVELAKRAKTLGTRGRCTALLCHRRDGKQVQDFDVKLRRIWDDIKGVTLLAFYADFRATLP----PQTGDMARVPQNAPNLP-PAFVERGDIIKAVVQDLVATDRATNAAHVLRGMPGGGKTVAANAVVHCEDVHRSFKDGVFWVQVGQVGTGNPMALLQG 706
            W+A+ATVG+LD+ASVGPL PVC+AF ALIEAAEGA E    L+ LVS C+FL  V I+HG+  G L  V KP+++FV TT +LA  A      G+C A  CHR D   + DF+  LRRI  DI  V  L  +  F A LP    P   DMA VP  A  LP  ++VER  + +  V D + +     A + + GM GGGK+V A+AVV    V   F+ G+FWV+VG+    + +ALLQG
Sbjct:   56 WIATATVGVLDVASVGPLVPVCEAFKALIEAAEGAAESQHKLQSLVSQCAFLATVLIQHGRAVGPLAQVHKPIEDFVVTTNDLAGFAARWANGGKCRAFFCHRPDLSALADFEECLRRIRSDIALVDGLEHHQSFLAALPSLLPPSLPDMAAVPAGALELPCSSYVERAAVQE--VADGLTSPEDPRAPYTVVGMGGGGKSVLASAVVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQG 293          
BLAST of mRNA_E_fasciculatus_S2_contig7505.15672.1 vs.
Match: NB-ARC (and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 3.130e-48
Identity = 111/240 (46.25%), Postives = 145/240 (60.42%), Query Frame = -2
Query:    2 WMASATVGLLDMASVGPLTPVCKAFTALIEAAEGAIEVAENLEELVSWCSFLVGVFIKHGKQEGNLRPVEKPMKEFVATTVELAKRAKTLGTRGRCTALLCHRRDGKQVQDFDVKLRRIWDDIKGVTLLAFYADFRATLP----PQTGDMARVPQNAPNLPPA-FVERGDIIKAVVQDLVATDRATNAAHVLRGMPGGGKTVAANAVVHCEDVHRSFKDGVFWVQVGQVGTGNPMALLQG 706
            WM ++ VG+L +ASVGPL PVC+AF ALIEAAEGA E  + L+ LVS C+FL  V I+HG+  G L  V+KP+++FVATT ELA  A      G+C A  CHR D   +  F+  LRRI  DI  V  L  +  F A LP    P   DMA VP  A  LP + +VER   ++ V   L A + +  A + + GM GGGK+V A+AVV    V   F+ G+FWV+VG+    + +ALLQG
Sbjct:   93 WMTTSAVGVLGVASVGPLVPVCEAFKALIEAAEGAAECQDKLQSLVSQCAFLATVLIQHGRAVGPLAQVQKPIQDFVATTNELAGFAARWAKGGKCRAFFCHRPDLSALAGFEECLRRIRSDIALVDGLEHHQSFLAALPSLLPPSLPDMAAVPAGALELPSSSYVERA-AVQEVADGLTAPEES-RAPYTVVGMGGGGKSVLASAVVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQG 330          
BLAST of mRNA_E_fasciculatus_S2_contig7505.15672.1 vs.
Match: NB-ARC (and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 7.690e-48
Identity = 109/240 (45.42%), Postives = 143/240 (59.58%), Query Frame = -2
Query:    2 WMASATVGLLDMASVGPLTPVCKAFTALIEAAEGAIEVAENLEELVSWCSFLVGVFIKHGKQEGNLRPVEKPMKEFVATTVELAKRAKTLGTRGRCTALLCHRRDGKQVQDFDVKLRRIWDDIKGVTLLAFYADFRATLP----PQTGDMARVPQNAPNLPPA-FVERGDIIKAVVQDLVATDRATNAAHVLRGMPGGGKTVAANAVVHCEDVHRSFKDGVFWVQVGQVGTGNPMALLQG 706
            WM ++ VG+L +ASVGPL PVC+AF ALIEAAEGA E  + L+ LVS C+FL  V I+HG+  G L  V+KP+++FV TT ELA  A      G+C A  CHR D   +  F+  LRRI  DI  V  L  +  F A LP    P   DMA VP  A  LP + +VER  + +  V D + T   + A + + GM GGGK+V A+A V    V   F+ G+FWV+VG+    + +ALLQG
Sbjct:  110 WMTTSAVGVLGVASVGPLVPVCEAFKALIEAAEGAAECQDKLQSLVSQCAFLATVLIQHGRAVGPLAQVQKPIQDFVVTTNELAGFAARWAKGGKCRAFCCHRPDLSALAGFEECLRRIGSDIALVDGLEHHQSFLAALPSLLPPSLPDMAAVPTGALELPSSSYVERAAVQE--VADGLTTPEESRAPYTVVGMGGGGKSVLASAAVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQG 347          
BLAST of mRNA_E_fasciculatus_S2_contig7505.15672.1 vs.
Match: NB-ARC (and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 9.870e-45
Identity = 106/239 (44.35%), Postives = 140/239 (58.58%), Query Frame = -2
Query:    2 WMASATVGLLDMASVGPLTPVCKAFTALIEAAEGAIEVAENLEELVSWCSFLVGVFIKHGKQEGNLRPVEKPMKEFVATTVELAKRAKTLGTRGRCTALLCHRRDGKQVQDFDVKLRRIWDDIKGVTLLAFYADFRATLP----PQTGDMARVPQNAPNLPPAFVERGDIIKAVVQDLVATDRATNAAHVLRGMPGGGKTVAANAVVHCEDVHRSFKDGVFWVQVGQVGTGNPMALLQG 706
            WM +A VG+LD+ASVGPL PVC+A  ALIEAAEGA E  + ++ LVS C+FL  V I+HG+  G L  V KP+++FV TT ELA  A      G+C A  CHR D   +  F+  LR I  DI  V  L  +  F A LP    P+  DMA VP  A +LP  +VER   ++ V   L A +    A + + G+ GGGK+V A+AVV    V   F+ G+ WV+VG+    + + LLQG
Sbjct:   68 WMTTAAVGVLDVASVGPLVPVCQALKALIEAAEGAAECEDKVQSLVSQCAFLATVLIQHGRAVGALAQVHKPIQDFVVTTNELAGFAARWAKDGKCRAFFCHRPDLSALAGFEECLRGIRSDIALVDGLEQHQLFLAALPSLRPPRLLDMAAVPAGALDLPRGYVERA-AVQEVADGLTAPEEP-RAPYTVVGLGGGGKSVLASAVVRKPSVREHFRGGISWVRVGRGAKNSLLPLLQG 304          
BLAST of mRNA_E_fasciculatus_S2_contig7505.15672.1 vs.
Match: NB-ARC (and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6W2_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 2.070e-43
Identity = 105/227 (46.26%), Postives = 131/227 (57.71%), Query Frame = -2
Query:   47 WMASATVGLLDMASVGPLTPVCKAFTALIEAAEGAIEVAENLEELVSWCSFLVGVFIKHGKQEGNLRPVEKPMKEFVATTVELAKRAKTLGTRGRCTALLCHRRDGKQVQDFDVKLRRIWDDIKGVT-------LLAFYADFRATLPPQTGDMARVPQNAPNLPPAFVERGDIIKAVVQDLVATDRATNAAHVLRGMPGGGKTVAANAVVHCEDVHRSFKDGVFWVQ 706
            WMA ATVG+LD+ASVGPL PVC+AF  LIEAAEGA E  + L+ L+S C+FL  V I+H +  G L  V+KPMK+FVATT +LA  A T    G+C AL CHR D   + DF+  LR I +DI  V        LLA Y   R   PP    MA VP    +L    + R  ++   +  L  T    +A  VL GM G GK+V A+AVV  E V   F  G+FWV+
Sbjct:   65 WMARATVGVLDIASVGPLEPVCQAFKGLIEAAEGAAESQDKLKGLISRCAFLTTVLIQHDRAVGPLAQVQKPMKDFVATTNDLAAFAATWAKGGKCRALFCHRSDRSTLTDFEEGLRTISNDIALVDGLEHHQLLLAVYRQLR---PPTLPAMASVPAGPISLTDGHISRPSLLGRAIGYLTNT-AVGDAPCVLTGMAGAGKSVLASAVVRDEKVREHFHAGMFWVR 287          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7505.15672.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
NB-ARC5.370e-13587.23and TPR repeat-containing protein n=1 Tax=Ectocarp... [more]
NB-ARC2.820e-10565.96domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
NB-ARC5.500e-7252.72domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized7.980e-5557.38protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.260e-5474.80protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
NB-ARC3.340e-5046.67domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
NB-ARC3.130e-4846.25and TPR repeat-containing protein n=1 Tax=Ectocarp... [more]
NB-ARC7.690e-4845.42and TPR repeat-containing protein n=1 Tax=Ectocarp... [more]
NB-ARC9.870e-4544.35and TPR repeat-containing protein n=1 Tax=Ectocarp... [more]
NB-ARC2.070e-4346.26and TPR repeat-containing protein n=1 Tax=Ectocarp... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7505contigE_fasciculatus_S2_contig7505:3401..4107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size709
Hectar predicted targeting categoryother localisation
Exons1
Cds size369
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842412.6026278-UTR-E_fasciculatus_S2_contig7505:3400..37381696842412.6026278-UTR-E_fasciculatus_S2_contig7505:3400..3738Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7505 3401..3738 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842412.6142752-CDS-E_fasciculatus_S2_contig7505:3738..41071696842412.6142752-CDS-E_fasciculatus_S2_contig7505:3738..4107Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7505 3739..4107 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7505.15672.1prot_E_fasciculatus_S2_contig7505.15672.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7505 3739..4107 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7505.15672.1

>prot_E_fasciculatus_S2_contig7505.15672.1 ID=prot_E_fasciculatus_S2_contig7505.15672.1|Name=mRNA_E_fasciculatus_S2_contig7505.15672.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=123bp
MSSQIRRSFTSKSCTCFPSLRWQRSAVHLPLVPKVLARFASSTVVATNSF
MGFSTGRRLPSCLPCLINTPTRNEHQDTSSSRFSATSMAPSAASMSAVKA
LHTGVRGPTLAMSSRPTVADAIH
back to top

mRNA from alignment at E_fasciculatus_S2_contig7505:3401..4107+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7505.15672.1 ID=mRNA_E_fasciculatus_S2_contig7505.15672.1|Name=mRNA_E_fasciculatus_S2_contig7505.15672.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=707bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7505:3401..4107+ (Ectocarpus fasciculatus EfasUO2)
AGCCCTGTAGCAGGGCCATCGGGTTGCCCGTGCCAACCTGCCCCACTTGC ACCCAGAATACCCCGTCTTTGAAACTCCGGTGAACGTCCTCGCAGTGCAC GACTGCATTGGCTGCGACGGTCTTGCCCCCCCCGGGCATACCACGGAGCA CGTGGGCCGCGTTCGTTGCTCGATCCGTCGCCACCAAGTCCTGCACAACA GCTTTGATGATATCACCCCTCTCCACAAACGCCGGCGGCAGGTTTGGGGC GTTCTGGGGTACTCGGGCCATGTCGCCCGTTTGGGGGGGCAGCGTCGCTC GAAAGTCAGCGTAAAACGCTAGGAGAGTTACACCTTTGATGTCGTCCCAA ATACGGCGGAGCTTCACGTCGAAGTCTTGTACTTGTTTCCCGTCCCTCCG ATGGCAGAGGAGTGCGGTGCACCTTCCTCTTGTCCCCAAGGTTTTGGCAC GCTTCGCCAGCTCGACCGTCGTGGCGACAAACTCCTTCATGGGCTTTTCG ACCGGCCGCAGGTTGCCCTCCTGCTTGCCGTGCTTGATAAACACACCCAC TAGGAACGAGCACCAAGACACCAGCTCCTCTAGGTTCTCAGCCACCTCGA TGGCGCCTTCCGCAGCCTCAATGAGCGCTGTAAAGGCCTTGCACACGGGC GTGAGAGGGCCCACACTCGCCATGTCCAGCAGGCCAACGGTGGCCGATGC CATCCAT
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7505:3401..4107+

>mRNA_E_fasciculatus_S2_contig7505.15672.1 ID=mRNA_E_fasciculatus_S2_contig7505.15672.1|Name=mRNA_E_fasciculatus_S2_contig7505.15672.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=369bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7505:3401..4107+ (Ectocarpus fasciculatus EfasUO2)
ATGTCGTCCCAAATACGGCGGAGCTTCACGTCGAAGTCTTGTACTTGTTT
CCCGTCCCTCCGATGGCAGAGGAGTGCGGTGCACCTTCCTCTTGTCCCCA
AGGTTTTGGCACGCTTCGCCAGCTCGACCGTCGTGGCGACAAACTCCTTC
ATGGGCTTTTCGACCGGCCGCAGGTTGCCCTCCTGCTTGCCGTGCTTGAT
AAACACACCCACTAGGAACGAGCACCAAGACACCAGCTCCTCTAGGTTCT
CAGCCACCTCGATGGCGCCTTCCGCAGCCTCAATGAGCGCTGTAAAGGCC
TTGCACACGGGCGTGAGAGGGCCCACACTCGCCATGTCCAGCAGGCCAAC
GGTGGCCGATGCCATCCAT
back to top