mRNA_E_fasciculatus_S2_contig7505.15672.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7505.15672.1 vs.
Match: NB-ARC (and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL58_ECTSI) HSP 1 Score: 416 bits (1070), Expect = 5.370e-135 Identity = 205/235 (87.23%), Postives = 221/235 (94.04%), Query Frame = -2
Query: 2 WMASATVGLLDMASVGPLTPVCKAFTALIEAAEGAIEVAENLEELVSWCSFLVGVFIKHGKQEGNLRPVEKPMKEFVATTVELAKRAKTLGTRGRCTALLCHRRDGKQVQDFDVKLRRIWDDIKGVTLLAFYADFRATLPPQTGDMARVPQNAPNLPPAFVERGDIIKAVVQDLVATDRATNAAHVLRGMPGGGKTVAANAVVHCEDVHRSFKDGVFWVQVGQVGTGNPMALLQG 706
WMASATVGLLDMASVGPLTPVCKAFT+LIEAAEGAIEVA+NLEELVSWCSFLVGVFI+HGKQE NLRP+ KPMK+FVATT+ELAKRAK +G RG+CTALLCHRRDGKQVQDFDVKLR IWDDI+GVTLLAFY+DFRATLPP+T MARVP+NA LPPAFVER D+ KAVV+DLVATDRATNAAHVLRGMPGGGKT+AA AVV CEDV RSFKDG+FWVQVGQVGTGNPMALLQG
Sbjct: 85 WMASATVGLLDMASVGPLTPVCKAFTSLIEAAEGAIEVAKNLEELVSWCSFLVGVFIEHGKQEDNLRPIAKPMKDFVATTIELAKRAKAMGARGKCTALLCHRRDGKQVQDFDVKLRHIWDDIQGVTLLAFYSDFRATLPPKTAYMARVPKNAKQLPPAFVERRDLFKAVVKDLVATDRATNAAHVLRGMPGGGKTIAAKAVVRCEDVRRSFKDGIFWVQVGQVGTGNPMALLQG 319
BLAST of mRNA_E_fasciculatus_S2_contig7505.15672.1 vs.
Match: NB-ARC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L982_9PHAE) HSP 1 Score: 322 bits (826), Expect = 2.820e-105 Identity = 155/235 (65.96%), Postives = 192/235 (81.70%), Query Frame = -2
Query: 2 WMASATVGLLDMASVGPLTPVCKAFTALIEAAEGAIEVAENLEELVSWCSFLVGVFIKHGKQEGNLRPVEKPMKEFVATTVELAKRAKTLGTRGRCTALLCHRRDGKQVQDFDVKLRRIWDDIKGVTLLAFYADFRATLPPQTGDMARVPQNAPNLPPAFVERGDIIKAVVQDLVATDRATNAAHVLRGMPGGGKTVAANAVVHCEDVHRSFKDGVFWVQVGQVGTGNPMALLQG 706
WMAS VGLL++ASVGPL P+C+AF LI+AAEGA E ENL EL++WC+FL V ++HGK+ L PV KP+++FV+TT +LAKRAK L TR +C ALLC RDGKQ+QDFD KLR IW+DI+GVT+L A+FRA PP+TG+MA++P NAP LPPAFVER +++AV QDL A +RAT+ A VLRG+PGGGKTVAA++VV CE+V RSFKDG+FWVQVGQVGTGNP ALL+G
Sbjct: 44 WMASGVVGLLNVASVGPLMPICEAFKGLIQAAEGAAEADENLRELIAWCAFLTDVLLQHGKEVDALAPVMKPLRDFVSTTNQLAKRAKRLATRRKCAALLCFARDGKQIQDFDAKLRSIWNDIQGVTILWVSAEFRAARPPKTGEMAKIPHNAPALPPAFVERSGLVEAVAQDLAAAERATDTADVLRGIPGGGKTVAASSVVRCENVRRSFKDGIFWVQVGQVGTGNPTALLKG 278
BLAST of mRNA_E_fasciculatus_S2_contig7505.15672.1 vs.
Match: NB-ARC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK53_9PHAE) HSP 1 Score: 234 bits (597), Expect = 5.500e-72 Identity = 126/239 (52.72%), Postives = 162/239 (67.78%), Query Frame = -2
Query: 2 WMASATVGLLDMASVGPLTPVCKAFTALIEAAEGAIEVAENLEELVSWCSFLVGVFIKHGKQEGNLRPVEKPMKEFVATTVELAKRAKTLGTRGRCTALLCHRRDGKQVQDFDVKLRRIWDDIKGVTLLAFYADF----RATLPPQTGDMARVPQNAPNLPPAFVERGDIIKAVVQDLVATDRATNAAHVLRGMPGGGKTVAANAVVHCEDVHRSFKDGVFWVQVGQVGTGNPMALLQG 706
WMAS VGLLD+ASVGPLTPVC+AFTALIEAA+GA+EV ENL ELV+WC+FLVGV I+HGKQ NL+ V KP+ EFVATT ELAKRA + R +C A LCH++D K + FD KLRR W DI+G+ +L + P DMA VP A LPP+ V+R + +++ L ATD A+ A +VL GM G GK++ A++VV E+V + F+ G FW++VG G AL +G
Sbjct: 66 WMASTAVGLLDVASVGPLTPVCQAFTALIEAAQGAMEVVENLRELVTWCAFLVGVLIEHGKQVDNLKAVNKPLNEFVATTGELAKRANVVAGRSKCMAFLCHKKDAKMMASFDDKLRRFWTDIQGLAVLDIQEIVTRMEERSRPLPLPDMADVPAAALKLPPSHVKRVGLEAEILKSLTATD-ASGAPYVLLGMGGAGKSLLASSVVRTEEVRKHFRAGAFWLRVGPGGEDQLQALFEG 303
BLAST of mRNA_E_fasciculatus_S2_contig7505.15672.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE) HSP 1 Score: 199 bits (505), Expect = 7.980e-55 Identity = 105/183 (57.38%), Postives = 129/183 (70.49%), Query Frame = -2
Query: 173 WMASATVGLLDMASVGPLTPVCKAFTALIEAAEGAIEVAENLEELVSWCSFLVGVFIKHGKQEGNLRPVEKPMKEFVATTVELAKRAKTLGTRGRCTALLCHRRDGKQVQDFDVKLRRIWDDIKGVTLL-----AFYADFRATLPPQTGDMARVPQNAPNLPPAFVERGDIIKAVVQDLVATD 706
WMAS VGLLD+ASVGPL PVCKAFTALIEAA+GA EV ENL ELV+WC+FLVGVFI+HGKQ NL+ + KP+ E V+TT ELAKRAK + RG+CTAL CH++D K + FD KLRR+W DI+G+ +L + R+ P G MA VP A LPP+ V+R + +V L ATD
Sbjct: 102 WMASTAVGLLDIASVGPLIPVCKAFTALIEAAQGATEVVENLRELVTWCAFLVGVFIEHGKQVDNLQKIAKPLNELVSTTGELAKRAKVVAGRGKCTALFCHKKDAKTIASFDAKLRRLWTDIRGLAILDIQQIVIRLEERSRPVPVPG-MADVPAAALKLPPSHVKRVGLEAEIVNSLTATD 283
BLAST of mRNA_E_fasciculatus_S2_contig7505.15672.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU13_9PHAE) HSP 1 Score: 181 bits (460), Expect = 1.260e-54 Identity = 92/123 (74.80%), Postives = 102/123 (82.93%), Query Frame = -2
Query: 122 MKEFVATTVELAKRAKTLGTRGRCTALLCHRRDGKQVQDFDVKLRRIWDDIKGVTLLAFYADFRATLPPQTGDMARVPQNAPNLPPAFVERGDIIKAVVQDLVATDRATNAAHVLRGMPGGGK 490
MK+FVATT+ELAKRA +LG RG+C ALLC R+DGK VQDF VKLRR WD I+GVTLLAFY FRATL P TGDM RVP+NAP LPPA VER +I+A VQDLV RATNAAHVLRGMPGGG+
Sbjct: 1 MKDFVATTIELAKRATSLGARGKCMALLCRRKDGKHVQDFKVKLRRTWDAIQGVTLLAFYDVFRATLLPGTGDMVRVPKNAPQLPPAIVERRHLIEATVQDLVVMGRATNAAHVLRGMPGGGQ 123
BLAST of mRNA_E_fasciculatus_S2_contig7505.15672.1 vs.
Match: NB-ARC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE) HSP 1 Score: 183 bits (465), Expect = 3.340e-50 Identity = 112/240 (46.67%), Postives = 145/240 (60.42%), Query Frame = -2
Query: 2 WMASATVGLLDMASVGPLTPVCKAFTALIEAAEGAIEVAENLEELVSWCSFLVGVFIKHGKQEGNLRPVEKPMKEFVATTVELAKRAKTLGTRGRCTALLCHRRDGKQVQDFDVKLRRIWDDIKGVTLLAFYADFRATLP----PQTGDMARVPQNAPNLP-PAFVERGDIIKAVVQDLVATDRATNAAHVLRGMPGGGKTVAANAVVHCEDVHRSFKDGVFWVQVGQVGTGNPMALLQG 706
W+A+ATVG+LD+ASVGPL PVC+AF ALIEAAEGA E L+ LVS C+FL V I+HG+ G L V KP+++FV TT +LA A G+C A CHR D + DF+ LRRI DI V L + F A LP P DMA VP A LP ++VER + + V D + + A + + GM GGGK+V A+AVV V F+ G+FWV+VG+ + +ALLQG
Sbjct: 56 WIATATVGVLDVASVGPLVPVCEAFKALIEAAEGAAESQHKLQSLVSQCAFLATVLIQHGRAVGPLAQVHKPIEDFVVTTNDLAGFAARWANGGKCRAFFCHRPDLSALADFEECLRRIRSDIALVDGLEHHQSFLAALPSLLPPSLPDMAAVPAGALELPCSSYVERAAVQE--VADGLTSPEDPRAPYTVVGMGGGGKSVLASAVVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQG 293
BLAST of mRNA_E_fasciculatus_S2_contig7505.15672.1 vs.
Match: NB-ARC (and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI) HSP 1 Score: 180 bits (456), Expect = 3.130e-48 Identity = 111/240 (46.25%), Postives = 145/240 (60.42%), Query Frame = -2
Query: 2 WMASATVGLLDMASVGPLTPVCKAFTALIEAAEGAIEVAENLEELVSWCSFLVGVFIKHGKQEGNLRPVEKPMKEFVATTVELAKRAKTLGTRGRCTALLCHRRDGKQVQDFDVKLRRIWDDIKGVTLLAFYADFRATLP----PQTGDMARVPQNAPNLPPA-FVERGDIIKAVVQDLVATDRATNAAHVLRGMPGGGKTVAANAVVHCEDVHRSFKDGVFWVQVGQVGTGNPMALLQG 706
WM ++ VG+L +ASVGPL PVC+AF ALIEAAEGA E + L+ LVS C+FL V I+HG+ G L V+KP+++FVATT ELA A G+C A CHR D + F+ LRRI DI V L + F A LP P DMA VP A LP + +VER ++ V L A + + A + + GM GGGK+V A+AVV V F+ G+FWV+VG+ + +ALLQG
Sbjct: 93 WMTTSAVGVLGVASVGPLVPVCEAFKALIEAAEGAAECQDKLQSLVSQCAFLATVLIQHGRAVGPLAQVQKPIQDFVATTNELAGFAARWAKGGKCRAFFCHRPDLSALAGFEECLRRIRSDIALVDGLEHHQSFLAALPSLLPPSLPDMAAVPAGALELPSSSYVERA-AVQEVADGLTAPEES-RAPYTVVGMGGGGKSVLASAVVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQG 330
BLAST of mRNA_E_fasciculatus_S2_contig7505.15672.1 vs.
Match: NB-ARC (and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI) HSP 1 Score: 179 bits (453), Expect = 7.690e-48 Identity = 109/240 (45.42%), Postives = 143/240 (59.58%), Query Frame = -2
Query: 2 WMASATVGLLDMASVGPLTPVCKAFTALIEAAEGAIEVAENLEELVSWCSFLVGVFIKHGKQEGNLRPVEKPMKEFVATTVELAKRAKTLGTRGRCTALLCHRRDGKQVQDFDVKLRRIWDDIKGVTLLAFYADFRATLP----PQTGDMARVPQNAPNLPPA-FVERGDIIKAVVQDLVATDRATNAAHVLRGMPGGGKTVAANAVVHCEDVHRSFKDGVFWVQVGQVGTGNPMALLQG 706
WM ++ VG+L +ASVGPL PVC+AF ALIEAAEGA E + L+ LVS C+FL V I+HG+ G L V+KP+++FV TT ELA A G+C A CHR D + F+ LRRI DI V L + F A LP P DMA VP A LP + +VER + + V D + T + A + + GM GGGK+V A+A V V F+ G+FWV+VG+ + +ALLQG
Sbjct: 110 WMTTSAVGVLGVASVGPLVPVCEAFKALIEAAEGAAECQDKLQSLVSQCAFLATVLIQHGRAVGPLAQVQKPIQDFVVTTNELAGFAARWAKGGKCRAFCCHRPDLSALAGFEECLRRIGSDIALVDGLEHHQSFLAALPSLLPPSLPDMAAVPTGALELPSSSYVERAAVQE--VADGLTTPEESRAPYTVVGMGGGGKSVLASAAVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQG 347
BLAST of mRNA_E_fasciculatus_S2_contig7505.15672.1 vs.
Match: NB-ARC (and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI) HSP 1 Score: 170 bits (430), Expect = 9.870e-45 Identity = 106/239 (44.35%), Postives = 140/239 (58.58%), Query Frame = -2
Query: 2 WMASATVGLLDMASVGPLTPVCKAFTALIEAAEGAIEVAENLEELVSWCSFLVGVFIKHGKQEGNLRPVEKPMKEFVATTVELAKRAKTLGTRGRCTALLCHRRDGKQVQDFDVKLRRIWDDIKGVTLLAFYADFRATLP----PQTGDMARVPQNAPNLPPAFVERGDIIKAVVQDLVATDRATNAAHVLRGMPGGGKTVAANAVVHCEDVHRSFKDGVFWVQVGQVGTGNPMALLQG 706
WM +A VG+LD+ASVGPL PVC+A ALIEAAEGA E + ++ LVS C+FL V I+HG+ G L V KP+++FV TT ELA A G+C A CHR D + F+ LR I DI V L + F A LP P+ DMA VP A +LP +VER ++ V L A + A + + G+ GGGK+V A+AVV V F+ G+ WV+VG+ + + LLQG
Sbjct: 68 WMTTAAVGVLDVASVGPLVPVCQALKALIEAAEGAAECEDKVQSLVSQCAFLATVLIQHGRAVGALAQVHKPIQDFVVTTNELAGFAARWAKDGKCRAFFCHRPDLSALAGFEECLRGIRSDIALVDGLEQHQLFLAALPSLRPPRLLDMAAVPAGALDLPRGYVERA-AVQEVADGLTAPEEP-RAPYTVVGLGGGGKSVLASAVVRKPSVREHFRGGISWVRVGRGAKNSLLPLLQG 304
BLAST of mRNA_E_fasciculatus_S2_contig7505.15672.1 vs.
Match: NB-ARC (and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6W2_ECTSI) HSP 1 Score: 166 bits (420), Expect = 2.070e-43 Identity = 105/227 (46.26%), Postives = 131/227 (57.71%), Query Frame = -2
Query: 47 WMASATVGLLDMASVGPLTPVCKAFTALIEAAEGAIEVAENLEELVSWCSFLVGVFIKHGKQEGNLRPVEKPMKEFVATTVELAKRAKTLGTRGRCTALLCHRRDGKQVQDFDVKLRRIWDDIKGVT-------LLAFYADFRATLPPQTGDMARVPQNAPNLPPAFVERGDIIKAVVQDLVATDRATNAAHVLRGMPGGGKTVAANAVVHCEDVHRSFKDGVFWVQ 706
WMA ATVG+LD+ASVGPL PVC+AF LIEAAEGA E + L+ L+S C+FL V I+H + G L V+KPMK+FVATT +LA A T G+C AL CHR D + DF+ LR I +DI V LLA Y R PP MA VP +L + R ++ + L T +A VL GM G GK+V A+AVV E V F G+FWV+
Sbjct: 65 WMARATVGVLDIASVGPLEPVCQAFKGLIEAAEGAAESQDKLKGLISRCAFLTTVLIQHDRAVGPLAQVQKPMKDFVATTNDLAAFAATWAKGGKCRALFCHRSDRSTLTDFEEGLRTISNDIALVDGLEHHQLLLAVYRQLR---PPTLPAMASVPAGPISLTDGHISRPSLLGRAIGYLTNT-AVGDAPCVLTGMAGAGKSVLASAVVRDEKVREHFHAGMFWVR 287 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7505.15672.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7505.15672.1 >prot_E_fasciculatus_S2_contig7505.15672.1 ID=prot_E_fasciculatus_S2_contig7505.15672.1|Name=mRNA_E_fasciculatus_S2_contig7505.15672.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=123bp MSSQIRRSFTSKSCTCFPSLRWQRSAVHLPLVPKVLARFASSTVVATNSFback to top mRNA from alignment at E_fasciculatus_S2_contig7505:3401..4107+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7505.15672.1 ID=mRNA_E_fasciculatus_S2_contig7505.15672.1|Name=mRNA_E_fasciculatus_S2_contig7505.15672.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=707bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7505:3401..4107+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7505:3401..4107+ >mRNA_E_fasciculatus_S2_contig7505.15672.1 ID=mRNA_E_fasciculatus_S2_contig7505.15672.1|Name=mRNA_E_fasciculatus_S2_contig7505.15672.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=369bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7505:3401..4107+ (Ectocarpus fasciculatus EfasUO2)back to top |